Protein profiling for cancer biomarker discovery using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry and infrared imaging: A review

Analytica Chimica Acta

Volumn 690, Issue 1, 2011, Pages 26-34

  Bakry, R ^a   Rainer, M ^a   Huck, C W ^a   Bonn, G K ^a  

^a UNIVERSITY OF INNSBRUCK   (Austria)

Author keywords

Biomarker; Cancer; Infrared spectroscopy; Mass spectrometry; Protein profiling

Indexed keywords

BIOLOGICAL MIXTURES; CANCER; CANCER BIOLOGY; CANCER BIOMARKERS; CANCER STAGING; EARLY DETECTION; HIGH SENSITIVITY; HIGH-THROUGHPUT TECHNIQUE; INTACT PROTEINS; LASER DESORPTION/IONIZATION; MALDI-TOF; MALDI-TOF/MS; MATRIX-ASSISTED LASER DESORPTION/IONIZATION-TIME-OF-FLIGHT MASS SPECTROMETRY; NEW TECHNOLOGIES; PROTEIN PROFILING; PROTEOMIC PROFILING; PROTEOMIC TECHNOLOGIES; SPECTROSCOPIC IMAGING; SURFACE-ENHANCED LASER DESORPTION/IONIZATION; SYNERGISTIC COMBINATIONS; THERAPY MONITORING; TISSUE IMAGING; TISSUE SAMPLES;

BODY FLUIDS; DESORPTION; DIAGNOSIS; DISEASE CONTROL; DISEASES; INFRARED LASERS; INFRARED SPECTROSCOPY; MASS SPECTROMETERS; MASS SPECTROMETRY; PROTEINS; THERMOGRAPHY (IMAGING); TISSUE;

BIOMARKERS;

MAGNETIC NANOPARTICLE; METAL OXIDE; TUMOR MARKER;

BLOOD ANALYSIS; BREAST CANCER; CANCER RESEARCH; CANCER STAGING; CANCER SUSCEPTIBILITY; CANCER TISSUE; EARLY DIAGNOSIS; HIGH THROUGHPUT SCREENING; HISTOPATHOLOGY; HUMAN; INFRARED SPECTROMETRY; LUNG CANCER; MASS SPECTROMETRY; MATERIAL ENHANCED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MELANOMA; METASTASIS; NONHUMAN; PRIORITY JOURNAL; PROGNOSIS; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN PHOSPHORYLATION; PROTEIN PROCESSING; PROTEOMICS; SENSITIVITY AND SPECIFICITY; SHORT SURVEY; SURFACE ENHANCED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; TISSUE DISTRIBUTION; URINALYSIS; UTERINE CERVIX CANCER;

HUMANS; NANOPARTICLES; NEOPLASMS; PROTEIN ARRAY ANALYSIS; PROTEIN PROCESSING, POST-TRANSLATIONAL; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; SPECTROPHOTOMETRY, INFRARED; TUMOR MARKERS, BIOLOGICAL;

EID: 79952628909     PISSN: 00032670     EISSN: 18734324     Source Type: Journal    
DOI: 10.1016/j.aca.2011.01.044     Document Type: Short Survey

References (78)

1. Gygi S., Rochon Y., Franza B.R., Aebersold R. Mol. Cell. Biol. 1999, 19:1720-1730.
2. Westont A.D., Hood L. J. Proteome Res. 2004, 3:179-196.
3. Rifai N., Gillette M.A., Carr S.A. Nat. Biotechnol. 2006, 24:971-983.
4. Petricoin E.E., Paweletz C.P., Liotta L.A. J. Mammary Gland Biol. Neoplasia 2002, 7:433-440.
5. Li J., Zhang Z., Rosenzweig J., Wang Y.Y., Chan D.W. Clin. Chem. 2002, 48:1296-1304.
6. Srinivas P.R., Kramer B.S., Srivastava S. Lancet Oncol. 2001, 2:698-704.
7. Sidransky D. Nat. Rev. Cancer 2002, 2:210-219.
8. Kyle R.A. Mayo Clin. Proc. 1994, 69:680-683.
9. Sinclair D., Dagg J.H., Smith J.G., Stott D.I. Br. J. Haematol. 1986, 62:689-694.
10. Adkins J.N., Varnum S.M., Auberry K.J., Moore R.J., Angell N.H., Smith R.D., Springer D.L., Pounds J.G. Mol. Cell. Proteomics 2002, 1:947-955.
11. Hutchens T.W., Yip T.T. Commun. Mass Spectrom. 1993, 7:576-580.
12. Kiehntopf M., Siegmund R., Deufel T. Clin. Chem. Lab. Med. 2007, 45:1435-1449.
13. Kozak K.R., Su F., Whitelegge J.P., Faull K., Reddy S., Farias-Eisner R. Proteomics 2005, 5:4589-4596.
14. Malik G., Ward M.D., Gupta S.K., Trosset M.W., Grizzle W.E., Adam B.L., Diaz J.I., Semmes O.J. Clin. Cancer Res. 2005, 11:1073-1085.
15. Lebrecht A., Boehm D., Schmidt M., Koelbl H., Grus F.H. Cancer Genomics Proteomics 2009, 6:75-83.
16. Ueda K., Fukase Y., Katagiri T., Ishikawa N., Irie S., Sato T.A., Ito H., Nakayama H., Miyagi Y., Tsuchiya E., Kohno N., Shiwa M., Nakamura Y., Daigo Y. Proteomics 2009, 9:2182-2192.
17. Albrethsen J., Bøgebo R., Gammeltoft S., Olsen J., Winther B., Raskov B.H. BMC Cancer 2005, 5:8.
18. Orvisky E., Drake S.K., Martin B.M., Abdel-Hamid M., Ressom H.W., Varghese R.S., An Y., Saha D., Hortin G.L., Loffredo C.A., Goldman R. Proteomics 2006, 6:2895-2902.
19. Faye R.S., Aamdal S., Hoifodt H.K. Clin. Cancer Res. 2004, 10:4134-4139.
20. Frias J.C., Ma Y.Q., Williams K.J. Nano Lett. 2006, 6:2220-2224.
21. Yang H.H., Zhang S.Q., Chen X.L., Zhuang Z.X., Xu J.G., Wang X.R. Anal. Chem. 2004, 76:1316-1321.
22. Wiekhorst F., Seliger C., Jurgons R. J. Nanosci. Nanotechnol. 2006, 6:3222-3225.
23. Hergt R., Hiergeist R., Hilger I. J. Magn. Magn. Mater. 2004, 270:345-357.
24. Agrawal K., Wu H.F. Rapid Commun. Mass Spectrom. 2008, 22:283-290.
25. Teng C.H., Ho K.C., Lin Y.S., Chen Y.C. Anal. Chem. 2004, 76:4337-4342.
26. Chen Y.J., Chen S.H., Chien Y.Y., Chang Y.W., Liao H.K., Chang C.Y., Jan M.D., Wang K.T., Lin C.C. Chembiochem 2005, 6:1169-1173.
27. Moritake S., Taira S., Sugiura Y., Setou M., Ichiyanagi Y. J. Nanosci. Nanotechnol. 2009, 9:168-176.
28. Lin H.Y., Chen W.Y., Chen Y.C. Anal. Bioanal. Chem. 2009, 394:2129-2136.
29. Zhao L., Wu R., Han G., Zhou H., Ren L., Tian R., Zou H. J. Am. Soc. Mass Spectrom. 2008, 19:1176-1186.
30. Chen C.T., Chen Y.C. Anal. Chem. 2005, 77:5912-5919.
31. Lo C.Y., Chen W.Y., Chen C.T., Chen Y.C. J. Proteome Res. 2007, 6:887-893.
32. Liu J.C., Chen W.J., Li C.W., Mong K.K.T., Tsai P.J., Tsai T.L., Lee Y.C., Chen Y.C. Analyst 2009, 134:2087-2094.
33. Sudhir P.R., Shrivas K., Zhou Z.C., Wu H.F. Rapid Commun. Mass Spectrom. 2008, 22:3076-3086.
34. Wang K.Y., Chuang S.A., Lin P.C., Huang L.S., Chen S.H., Ouarda S., Pan W.H., Lee P.Y., Lin C.C., Chen Y.J. Anal. Chem. 2008, 80:6159-6167.
35. Yao N., Chen H., Lin H., Deng C., Zhang X. J. Chromatogr. A 2008, 1185:93-101.
36. Chen C.T., Chen W.Y., Tsai P.J., Chien K.Y., Yu J.S., Chen Y.C. J. Proteome Res. 2007, 6:316-325.
37. Chang S.Y., Zheng N.Y., Chen C.S., Chen C.D., Chen Y.Y., Wang C.R.C. J. Am. Soc. Mass Spectrom. 2007, 18:910-918.
38. Lin P.C., Chou P.H., Chen S.H., Liao H.K., Wang K.Y., Chen Y.J., Lin C.C. Small 2006, 2(4):485-489.
39. Villanueva J., Philip J., Entenberg D., Chaparro C.A., Tanwar M.K., Holland E.C., Tempst P. Anal. Chem. 2004, 76:1560-1570.
40. Villanueva J., Martorella A.J., Lawlor K., Philip J., Fleisher M., Robbins R.J., Tempst P. Mol. Cell. Proteomics 2006, 5:1840-1852.
41. Villanueva J., Shaffer D.R., Philip J., Chaparro C.A., Erdjument-Bromage H., Olshen A.B., Fleisher M., Lilja H., Brogi E., Boyd J., Sanchez-Carbayo M., Holland E.C., Cordon-Cardo C., Scher H.I., Tempst P. J. Clin. Invest. 2006, 116:271-284.
42. Goldman R., Ressom H.W., Abdel-Hamid M., Goldman L., Wang A., Varghese R.S., An Y., Loffredo C.A., Drake S.K., Eissa S.A., Gouda I., Ezzat S., Moiseiwitsch F.S. Carcinogenesis 2007, 28:2149-2153.
43. Fan D.M., Shi H.R., Chen Z.M., Wu Q.H., Liu H.N., Zhang R.T. Afr. J. Microbiol. Res. 2010, 4:940-951.
44. Feuerstein I., Najam-ul-Haq M., Rainer M., Trojer l., Bakry R., Aprilita N.H., Stecher G., Huck C.W., Bonn G.K., Klocker H., Bartsch G., Guttman A. J. Am. Soc. Mass Spectrom. 2006, 17:1203-1208.
45. Najam-ul-Haq M., Rainer M., Trojer L., Feuerstein I., Vallant R.M., Huck C.W., Bonn G.K. Expert Rev. Proteomics 2007, 4:447-452.
46. Vallant R.M., Szabo Z., Trojer L., Najam-ul-Haq M., Rainer M., Huck C.W., Bakry R., Bonn G.K. J. Proteome Res. 2007, 6:44-53.
47. Rainer M., Najam-ul-Haq M., Huck C.W., Feuerstein I., Bakry R., Huber L.A., Gjerde D.T., Zou X., Qian H., Du X., Fang W., Ke Y., Bonn G.K. Rapid Commun. Mass Spectrom. 2006, 20:2954-2960.
48. Feuerstein I., Rainer M., Bernardo K., Stecher G., Huck C.W., Kofler K., Pelzer A., Horninger W., Klocker H., Bartsch G., Bonn G.K. J. Proteome Res. 2005, 4:2320-2326.
49. Greiderer A., Rainer M., Najam-ul-Haq M., Vallant R.M., Huck C.W., Bonn G.K. Amino Acids 2009, 37:341-348.
50. Najam-ul-Haq M., Rainer M., Schwarzenauer T., Huck C.W., Bonn G.K. Anal. Chim. Acta 2006, 561:32-39.
51. Rainer M., Najam-ul-Haq M., Bakry R., Huck C.W., Bonn G.K. J. Proteome Res. 2007, 6:382-386.
52. Rodriguez-Pineiro M.A., Paez de la Cadena M., Lopez-Saco A., Rodriguez-Berrocal F.J. Mol. Cell. Proteomics 2006, 5:1647-1657.
53. Soucek K., Kamaid A., Phung A.D., Kubala L., Bulinski C.J., Harper R.W., Eiserich J.P. Prostate 2006, 66:954-965.
54. Hanash S.M., Pitteri S.J., Facah V.M. Nature 2008, 452:571-579.
55. Kirmiz C., Li B., An H.J., Clowers B.H., Chew H.K., Lam K.S., Ferrige A., Alecio R., Borowsky A.D., Sulaimon S., Lebrilla C.B., Miyamoto S. Mol. Cell. Proteomics 2007, 6:43-55.
56. Oerntoft T.F., Vestergaard E.M. Electrophoresis 1999, 20:362-371.
57. Semmes O.J., Malik G., Warde M. J. Cell. Biochem. 2006, 98:496-503.
58. Kobata A., Amano J. Immunol. Cell Biol. 2005, 83:429-439.
59. Zuzana K., Mechref Y., Al Bataineh M.M., Dobrolecki L.E., Hickey R.J., Vinson J., Sweeney C.J., Novotny M.V. J. Proteome Res. 2007, 6:1822-1832.
60. Hammoud Z., Mechref Y., Hussein A., Bekesova S., Zhang M., Kesler K.A., Novotny M.V. J. Thorac. Cardiovasc. Surg. 2010, 139:1216-1223.
61. Kobayashi I., Semba S., Matsuda Y., Kuroda Y., Yokozaki H. Pathobiology 2006, 73:8-17.
62. Hu L., Zhou H., Li Y., Sun S., Guo L., Ye M., Tian X., Gu J., Yang S., Zou H. Anal. Chem. 2009, 81:94-104.
63. Chaurand P., Schwartz S.A., Caprioli R.M. Anal. Chem. 2004, 76:87A-93A.
64. Stoeckli M., Chaurand P., Hallahan D.E., Caprioli R.M. Nat. Med. 2001, 7:493-496.
65. Chaurand P., Norris J.L., Cornett D.S., Mobley J.A., Caprioli R.M. J. Proteome Res. 2006, 5:2889-2900.
66. Caprioli R.M. Cancer Res. 2005, 65:10642-10645.
67. Chaurand P., Schwartz S.A., Billheimer D., Xu B.J., Crecelius A., Caprioli R.M. Anal. Chem. 2004, 76:1145-1155.
68. Chaurand P., Sanders M.E., Jensen R.A., Caprioli R.M. Am. J. Pathol. 2004, 165:1057-1068.
69. Kukreti S., Cerussi A., Tromberg B., Gratton E. J. Biomed. Opt. 2007, 12:1-3.
70. Mordechai S., Sahu R.K., Hammody Z., Mark S., Kantarovich K., Guterman H., Podshyvalov A., Goldstein J., Argov S. J. Microsc. 2004, 215:86-91.
71. Ding S., Hu T., Shen Y., Lin C., Huang Y. Fifth International Conference on Natural Computation 2009, 131.
72. Petter C.H., Heigl N., Rainer M., Bakry R., Pallua J., Bonn G.K., Huck C.W. Curr. Med. Chem. 2009, 16:318-326.
73. Li M.J., Hsu H.S., Liang R.C., Lin Y.S. Ultrastruct. Pathol. 2002, 26:365-370.
74. Fernandez D.C., Bhargava R., Hewitt S.M., Levin I.W. Nat. Biotechnol. 2005, 23:469-474.
75. Malins D.C., Polissar N.L., Nishikida K., holmes E.H., Gardner H.S., Gunselman S.J. Cancer 1995, 15:503-517.
76. Krafft C., Codrich D., Pelizzo G., Sergo V. Vib. Spectrosc. 2008, 46:141-149.
77. Conti C., Ferraris P., Giorgini E., Rubini C., Sabbatini S., Tosi G., Anastasopoulou J., Arapantoni P., Boukaki E., Konstadoukakis S., Theophanides T., Valavanis C. J. Mol. Struct. 2008, 881:46-51.
78. Gazi E., Lockyer N.P., Vickerman J.C., Gardner P., Dwyer J., Hart C.A., Brown M.D., Clarke N.W., Miyan J. Appl. Surf. Sci. 2004, 231-232:452-456.