Visualization of color anatomy and molecular fluorescence in whole-mouse cryo-imaging

Computerized Medical Imaging and Graphics

Volumn 35, Issue 3, 2011, Pages 195-205

  Gargesha, Madhusudhana ^a   Qutaish, Mohammed Q ^a   Roy, Debashish ^a,c   Steyer, Grant J ^a   Watanabe, Michiko ^d   Wilson, David L ^a,b  

^a Case Western Reserve University   (United States)

^b UNIVERSITY HOSPITALS OF CLEVELAND   (United States)

^c BIOINVISION INC   (United States)

^d CASE WESTERN RESERVE UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

Color and gradient magnitude feature detectors; Cryo imaging; Multi resolution volume rendering; Opacity transfer functions

Indexed keywords

BIODISTRIBUTIONS; BIOMEDICAL APPLICATIONS; COLOR IMAGES; CRYO-IMAGING; FEATURE DETECTION; GRADIENT MAGNITUDE; IMAGE VOLUME; INTERACTIVE VISUALIZATIONS; INTERNAL SURFACES; MOLECULAR FLUORESCENCE; MULTI-RESOLUTION VOLUME RENDERING; MULTI-RESOLUTIONS; MULTISCALES; OPACITY TRANSFER FUNCTIONS; SURFACE FEATURE;

DATA VISUALIZATION; FEATURE EXTRACTION; FLUORESCENCE; OPACITY; OPTICAL RESOLVING POWER; STEM CELLS; TRANSFER FUNCTIONS; VISUALIZATION; VOLUME RENDERING;

COLOR;

ANIMAL TISSUE; ARTICLE; COLOR; CRYO IMAGING; FLUORESCENCE IMAGING; IMAGE QUALITY; LIVER; MICROSCOPIC ANATOMY; MOLECULAR FLUORESCENCE; MOLECULAR IMAGING; MOUSE; NONHUMAN; ORGAN; PRIORITY JOURNAL; STEM CELL; TISSUE; VESSEL;

ANIMALS; COLORIMETRY; CRYOPRESERVATION; IMAGE ENHANCEMENT; IMAGE INTERPRETATION, COMPUTER-ASSISTED; MICE; MICROSCOPY, FLUORESCENCE; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY; WHOLE BODY IMAGING;

EID: 79952617334     PISSN: 08956111     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.compmedimag.2010.10.003     Document Type: Article

References (23)

1. Roy D., Steyer G.J., Gargesha M., Stone M.E., Wilson D.L. 3D cryo-imaging: a very high-resolution view of the whole mouse. Anatomical Record-Advances in Integrative Anatomy and Evolutionary Biology 2009, 292(March (3)):342-351.
2. Roy D., Breen M., Salvado O., Heinzel M., McKinley E., Wilson D. Imaging system for creating 3D block-face cryo-images of whole mice. Medical Imaging 2006: Physiology, Function, and Structure from Medical Images 2006, vol. 6143.
3. Wilson D., Roy D., Steyer G., Gargesha M., Stone M., McKinley E. Whole mouse cryo-imaging. Medical Imaging 2008: Physiology, Function, and Structure from Medical Images 2008, vol. 6916.
4. Csebfalvi B., Groller M. Interactive volume rendering based on a bubble model. Proceedings of Graphics Interface 2001 2001, 209-216.
5. Drebin R.A. Volume rendering. ACM SIGGRAPH 88 1988, 65-74.
6. Ebert D.S., Morris C.J., Rheingans P., Yoo T.S. Designing effective transfer functions for volume rendering from photographic volumes. IEEE Transactions on Visualization and Computer Graphics 2002, 8(April (2)):183-197.
7. Joe K., Simon P., Charles H., David E. Interactive translucent volume rendering and procedural modeling. Proceedings of the conference on Visualization 02 2002, 109-116. IEEE Computer Society, Boston, Massachusetts.
8. Kniss J., Kindlmann G., Hansen C. Multidimensional transfer functions for interactive volume rendering. IEEE Transactions on Visualization and Computer Graphics 2002, 8(July (3)):270-285.
9. Morris C.J., Ebert D. Direct volume rendering of photographic volumes using multi-dimensional colorbased transfer functions. Proceedings of the Symposium on Data Visualisation 2002 2002, 115-124.
10. Roerdink J.B.T.M. Multiresolution maximum intensity volume rendering by morphological adjunction pyramids. IEEE Transactions on Image Processing 2003, 12(June (6)):53-660.
11. Levoy M. Display of surfaces from volume data. IEEE Computer Graphics and Applications 1988, 8(May (3)):29-37.
12. Cootes T.F., Taylor C.J., Cooper D.H., Graham J. Active shape models - their training and application. Computer Vision and Image Understanding 1995, 61(January (1)):38-59.
13. He T., Hong L., Kaufman A., Pfister H. Generation of transfer functions with stochastic search techniques. Proceedings of VIS 1996, 96:227.
14. D. Stalling, H.C. Hege, M. Zockler, Amira - An Advanced 3D Visualization and Modeling System, 2007. http://amira.zib.de/.
15. Ackerman M.J. The visible human project. Journal of Biocommunication 1991, 18(2):14.
16. Ackerman M.J. The Visible Human Project: a resource for education. Academic Medicine 1999, 74(June (6)):667-670.
17. Ackerman M.J., Banvard R.A. Imaging outcomes from The National Library of Medicine's Visible Human Project(R). Computerized Medical Imaging and Graphics 2000, 24(May (3)):125-126.
18. Spitzer V.M., Whitlock D.G. The Visible Human Dataset: the anatomical platform for human simulation. Anatomical Record 1998, 253(April (2)):49-57.
19. Plataniotis K.N., Venetsanopoulos Color spaces. Color Image Processing and Applications 2000, Springer, pp. 1-45. 1st ed.
20. Jabri K.N., Wilson D.L. Quantitative assessment of image quality enhancement due to unsharp mask processing in X-ray fluoroscopy. Journal of the Optical Society of America 2002, 19(7):1297-1307.
21. Srinivas Y., Wilson D.L. Quantitative image quality evaluation of pixel binning in a flat panel detector for X-ray fluoroscopy. Medical Physics December 2003.
22. Srinivas Y., Wilson D.L. Image quality evaluation of flat panel and image intensifier digital magnification in X-ray fluoroscopy. Medical Physics 2002, 29(7):1611-1621.
23. Xue P., Thomas C.W., Gilmore G.C., Wilson D.L. An adaptive reference/test paradigm with applications to pulsed fluoroscopy perception. Behavior Research Methods, Instruments, and Computers 1998, 30(2):332-348.