Highly efficient 3D fluorescence microscopy with a Scanning Laser Optical Tomograph

Optics Express

Volumn 19, Issue 6, 2011, Pages 5419-5430

  Lorbeer, Raoul Amadeus ^a   Heidrich, Marko ^a,c   Lorbeer, Christina ^b   Ojeda, Diego Fernando Ramírez ^a   Bicker, Gerd ^b   Meyer, Heiko ^a,c   Heisterkamp, Alexander ^a,c  

^a LASER ZENTRUM HANNOVER E V   (Germany)

^b UNIVERSITY OF VETERINARY MEDICINE HANNOVER   (Germany)

^c INSTITUT FÜR QUANTENOPTIK   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ABSORPTION; FLUORESCENCE; FLUORESCENCE MICROSCOPY; MULTIPHOTON PROCESSES; PHOTOBLEACHING; PHOTONS; TOMOGRAPHY;

BIOLOGICAL MODELS; FLUORESCENCE SIGNALS; MULTI-MODAL; OPTICAL PROJECTION TOMOGRAPHY; OPTICAL TOMOGRAPH; PHOTO-TOXICITY; PHOTON COLLECTION; RADIATION DOSE; SCANNING LASERS; THREE-DIMENSIONAL DATA; THREE-DIMENSIONAL TRACKING; TOMOGRAPHIC;

THREE DIMENSIONAL;

ANIMAL; ARTICLE; BRAIN; DROSOPHILA MELANOGASTER; FLUORESCENCE MICROSCOPY; FLUORESCENT ANTIBODY TECHNIQUE; HISTOLOGY; IMAGE PROCESSING; INSTRUMENTATION; LARVA; LASER; LOCUST; METHODOLOGY; OPTICAL INSTRUMENTATION; TOMOGRAPHY;

ANIMALS; BRAIN; DROSOPHILA MELANOGASTER; FLUORESCENT ANTIBODY TECHNIQUE; IMAGE PROCESSING, COMPUTER-ASSISTED; LARVA; LASERS; LOCUSTA MIGRATORIA; MICROSCOPY, FLUORESCENCE; OPTICAL DEVICES; TOMOGRAPHY;

EID: 79952590834     PISSN: None     EISSN: 10944087     Source Type: Journal    
DOI: 10.1364/OE.19.005419     Document Type: Article

References (24)

1. J. Sharpe, U. Ahlgren, P. Perry, B. Hill, A. Ross, J. Hecksher-Sørensen, R. Baldock, and D. Davidson, "Optical projection tomography as a tool for 3D microscopy and gene expression studies", Science 296, 541-545 (2002). (Pubitemid 34408675)
2. J. Sharpe, "Optical projection tomography as a new tool for studying embryo anatomy", J. Anat. 202, 175-181 (2003). (Pubitemid 36503980)
3. J. Huisken, J. Swoger, F. D. Bene, J. Wittbrodt, and E. H. K. Stelzer, "Optical sectioning deep inside live embryos by selective plane illumination microscopy", Science 305, 1007-1009 (2004). (Pubitemid 39071776)
4. H. U. Dodt, U. Leischner, A. Schierloh, N. Jährling, C. P. Mauch, K. Deininger, J. M. Deussing, M. Eder, W. Zieglgänsberger, and K. Becker, "Ultramicroscopy: three-dimensional visualization of neuronal networks in the whole mouse brain", Nat. Methods 4, 331-336 (2007). (Pubitemid 46766978)
5. J. Huisken and D. Stainier, "Selective plane illumination microscopy techniques in developmental biology", Development 136, 1963-1975 (2009).
6. D. Razansky, M. Distel, C. Vinegoni, R. Ma, N. Perrimon, R. W. Köster, and V. Ntziachristos, "Multispectral opto-acoustic tomography of deep-seated fluorescent proteins in vivo", Nat. Photonics 3, 412-417 (2009).
7. T. M. Buzug, Computed Tomography from Photon Statistics to Modern Cone-beam CT (Springer-Verlag, 2008).
8. J. Sharpe, "Optical projection tomography", Annu. Rev. Biomed. Eng. 6, 209-228 (2004). (Pubitemid 39209497)
9. J. R. Walls, J. G. Sled, J. Sharpe, and R. M. Henkelman, "Correction of artefacts in optical projection tomography", Phys. Med. Biol. 50, 4645-4665 (2005). (Pubitemid 41361523)
10. J. Thomas, M. Bastiani, M. B. Bate, and C. Goodman, "From grasshopper to Drosophila: a common plan for neuronal development", Nature 310, 203-207 (1984).
11. M. Stern, S. Knipp, and G. Bicker, "Embryonic differentiation of serotonin-containing neurons in the enteric nervous system of the locust (Locusta migratoria)", J. Comp. Neurol. 501, 38-51 (2007). (Pubitemid 46155872)
12. C. Vinegoni, L. Fexon, P. F. Feruglio, M. Pivovarov, J.-L. Figueiredo, M. Nahrendorf, A. Pozzo, A. Sbarbati, and R. Weissleder, "High throughput transmission optical projection tomography using low cost graphics processing unit", Opt. Express 17, 22320-22332 (2009).
13. S. R. M. D. Abramoff and P. J. Magelhaes, "Image processing with imageJ", Biophotonics Int. 11, 36-42 (2004).
14. W. Burger and M. J. Burge, Digital Image Processing: An Algorithmic Introduction using Java (Springer Science+Business Media, 2007).
15. J. Meyer-Spradow, T. Ropinski, J. Mensmann, and K. Hinrichs, "Voreen: A rapid-prototyping environment for ray-casting-based volume visualizations", IEEE Comput. Graphics Appl. 29, 6-13 (2009).
16. N. Tyrer, J. Turner, and J. Altman, "Identifiable neurons in the locust central nervous system that react with antibodies to serotonin", J. Comp. Neurol. 227, 313-330 (1984). (Pubitemid 14097229)
17. A. Vallés and K. White, "Serotonin-containing neurons in Drosophila melanogaster: development and distribution", J. Comp. Neurol. 268, 414-428 (1988). (Pubitemid 18038206)
18. B. Münch, P. Trtik, F. Marone, and M. Stampanoni, "Stripe and ring artifact removal with combined wavelet-fourier filtering", Opt. Express 17, 8567-8591 (2009).
19. J. B. Pawley, Handbook of Biological Confocal Microscopy, 3rd ed. (Springer Science+Business Media, 2006).
20. J. R. Walls, J. G. Sled, J. Sharpe, and R. M. Henkelman, "Resolution improvement in emission optical projection tomography", Phys. Med. Biol. 52, 2775-2790 (2007).
21. R.-A. Lorbeer, H. Meyer, M. Heidrich, H. Lubatschowski, and A. Heisterkamp, "Applying optical Fourier filtering to standard optical projection tomography", Proc. SPIE 7570, 75700F (2010).
22. N. Krstajić and S. Doran, "Initial characterization of fast laser scanning optical CT apparatus for 3-D dosimetry", Journal of Physics: Conference Series (Institute of Physics Publishing, 2009), vol. 164, page 012022.
23. D. W. Wilson and B. M. W. Tsui, "Noise properties of filtered-backprojection and ML-EM reconstructed emission tomographic images", IRE Trans. Nucl. Sci. 40, 1198-1203 (1993).
24. M. Anstey, S. Rogers, S. Ott, M. Burrows, and S. Simpson, "Serotonin mediates behavioral gregarization underlying swarm formation in desert locusts", Science 323, 627-630 (2009).