A transposon insertion single-gene knockout library and new ordered cosmid library for the model organism Streptomyces coelicolor A3(2)

Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology

Volumn 99, Issue 3, 2011, Pages 515-522

  Fernandez Martinez L T ^a,d   Del Sol, R ^a   Evans, M C ^a   Fielding, S ^a   Herron, P R ^b   Chandra, G ^c   Dyson, P J ^a  

^a SWANSEA UNIVERSITY   (United Kingdom)

^b UNIVERSITY OF STRATHCLYDE   (United Kingdom)

^c NORWICH RESEARCH PARK   (United Kingdom)

^d Institute of Biotechnology INBIOTEC Parque Científico de León   (Spain)

Author keywords

Cosmid library; Insertion; Streptomyces; Transposon

Indexed keywords

ARTICLE; BACTERIAL GENOME; CONTROLLED STUDY; COSMID; GENE CASSETTE; GENE DISRUPTION; GENE FUNCTION; GENE INSERTION; GENE INSERTION SEQUENCE; GENE LIBRARY; GENETIC DATABASE; MUTAGENESIS; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PRIORITY JOURNAL; STREPTOMYCES COELICOLOR; TRANSPOSON;

COSMIDS; DNA TRANSPOSABLE ELEMENTS; MUTAGENESIS, INSERTIONAL; STREPTOMYCES COELICOLOR;

STREPTOMYCES; STREPTOMYCES COELICOLOR;

EID: 79952485577     PISSN: 00036072     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10482-010-9518-1     Document Type: Article

References (24)

1. S Akpe San Roman PD Facey LT Fernández-Martínez C Rodriguez C Vallin R Del Sol PJ Dyson 2010 A heterodimer of EsxA and EsxB is involved in sporulation and is secreted by a Type VII secretion system in Streptomyces coelicolor Microbiology 156 1719 1729 10.1099/mic.0.037069-0 20223806
2. T Baba T Ara M Hasegawa Y Takai Y Okumura M Baba KA Datsenko M Tomita BL Wanner H Mori 2006 Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection Mol Syst Biol 2 2006 2008 10.1038/msb4100050 (Pubitemid 43948152)
3. A Bishop S Fielding P Dyson P Herron 2004 Systematic insertional mutagenesis of a streptomycete genome: a link between osmoadaptation and antibiotic production Genome Res 14 893 900 1:CAS:528:DC%2BD2cXjvFykurg%3D 10.1101/gr.1710304 15078860 (Pubitemid 38660507)
4. S Colson GP van Wezel M Craig EE Noens H Nothaft AM Mommaas F Titgemeyer B Joris S Rigali 2008 The chitobiose-binding protein, DasA, acts as a link between chitin utilization and morphogenesis in Streptomyces coelicolor Microbiology 154 373 382 1:CAS:528:DC%2BD1cXjtFCrsLw%3D 10.1099/mic.0.2007/ 011940-0 18227241 (Pubitemid 351292291)
5. PD Facey MD Hitchings P Saavedra-Garcia L Fernández- Martínez PJ Dyson R Del Sol 2009 Streptomyces coelicolor Dps-like proteins: differential dual roles in response to stress during vegetative growth and in nucleoid condensation during reproductive cell division Mol Microbiol 73 1186 1202 1:CAS:528:DC%2BD1MXht1SrtLbO 10.1111/j.1365-2958.2009.06848.x 19719512
6. M Fedoryshyn E Welle A Bechthold A Luzhetskyy 2008 Functional expression of the Cre recombinase in actinomycetes Appl Microbiol Biotechnol 78 1065 1070 1:CAS:528:DC%2BD1cXkvFagtr8%3D 10.1007/s00253-008-1382-9 18299828
7. L Fernández-Martínez A Bishop L Parkes R Del Sol P Salerno B Sevcikova V Mazurakova J Kormanec P Dyson 2009 Osmoregulation in Streptomyces coelicolor: modulation of SigB activity by OsaC Mol Microbiol 71 1250 1262 10.1111/j.1365-2958.2009.06599.x 19154327
8. F Flett V Mersinias CP Smith 1997 High efficiency intergeneric conjugal transfer of plasmid DNA from Escherichia coli to methyl DNA-restricting streptomycetes FEMS Microbiol Lett 155 223 229 1:CAS:528:DyaK2sXmsVKltb0%3D 10.1111/j.1574-6968.1997.tb13882.x 9351205 (Pubitemid 28248232)
9. LA Gallagher E Ramage MA Jacobs R Kaul M Brittnacher C Manoil 2007 A comprehensive transposon mutant library of Francisella novicida, a bioweapon surrogate Proc Natl Acad Sci USA 104 1009 1014 1:CAS:528:DC%2BD2sXhtVShsLo%3D 10.1073/pnas.0606713104 17215359 (Pubitemid 46154727)
10. G Giaever AM Chu L Ni C Connelly L Riles S Veronneau S Dow A Lucau-Danila K Anderson B Andre AP Arkin A Astromoff M El-Bakkoury R Bangham R Benito S Brachat S Campanaro M Curtiss K Davis A Deutschbauer KD Entian P Flaherty F Foury DJ Garfinkel M Gerstein D Gotte U Guldener JH Hegemann S Hempel Z Herman DF Jaramillo DE Kelly SL Kelly P Kotter D LaBonte DC Lamb N Lan H Liang H Liao L Liu C Luo M Lussier R Mao P Menard SL Ooi JL Revuelta CJ Roberts M Rose P Ross-Macdonald B Scherens G Schimmack B Shafer DD Shoemaker S Sookhai-Mahadeo RK Storms JN Strathern G Valle M Voet G Volckaert CY Wang TR Ward J Wilhelmy EA Winzeler Y Yang G Yen E Youngman K Yu H Bussey JD Boeke M Snyder P Philippsen RW Davis M Johnston 2002 Functional profiling of the Saccharomyces cerevisiae genome Nature 418 387 391 1:CAS:528:DC%2BD38XlsFajt7k%3D 10.1038/nature00935 12140549 (Pubitemid 34826834)
11. B Gust 2009 Cloning and analysis of natural product pathways Methods Enzymol 458 159 180 1:CAS:528:DC%2BD1MXpsFejs7Y%3D 10.1016/S0076-6879(09)04807-1 19374983
12. B Gust GL Challis K Fowler T Kieser KF Chater 2003 PCR-targeted Streptomyces gene replacement identifies a protein domain needed for biosynthesis of the sesquiterpene soil odor geosmin Proc Natl Acad Sci USA 100 1541 1546 1:CAS:528:DC%2BD3sXhsFGktrY%3D 10.1073/pnas.0337542100 12563033 (Pubitemid 36254483)
13. PR Herron G Hughes G Chandra S Fielding PJ Dyson 2004 Transposon Express, a software application to report the identity of insertions obtained by comprehensive transposon mutagenesis of sequenced genomes: analysis of the preference for in vitro Tn5 transposition into GC-rich DNA Nucleic Acids Res 32 e113 10.1093/nar/gnh112 15308758
14. PA Hoskisson S Rigali K Fowler KC Findlay MJ Buttner 2006 DevA, a GntR-like transcriptional regulator required for development in Streptomyces coelicolor J Bacteriol 188 5014 5023 1:CAS:528:DC%2BD28XntFWmt70%3D 10.1128/JB.00307-06 16816174 (Pubitemid 44051468)
15. M Ito YG Kim H Tsuji M Kiwaki K Nomoto R Tanaka N Okada H Danbara 2010 A practical random mutagenesis system for probiotic Lactobacillus casei using Tn5 transposition complexes J Appl Microbiol 109 657 666 1:CAS:528: DC%2BC3cXhtV2itL3J 20202016
16. MA Jacobs A Alwood I Thaipisuttikul D Spencer E Haugen S Ernst O Will R Kaul C Raymond R Levy L Chun-Rong D Guenthner D Bovee MV Olson C Manoil 2003 Comprehensive transposon mutant library of Pseudomonas aeruginosa Proc Natl Acad Sci USA 100 14339 14344 1:CAS:528:DC%2BD3sXpsFGhsrw%3D 10.1073/pnas.2036282100 14617778 (Pubitemid 37499238)
17. G Khodakaramian S Lissenden B Gust L Moir PA Hoskisson KF Chater MC Smith 2006 Expression of Cre recombinase during transient phage infection permits efficient marker removal in Streptomyces Nucleic Acids Res 34 e20 10.1093/nar/gnj019 16473843 (Pubitemid 43380694)
18. K Kobayashi SD Ehrlich A Albertini G Amati KK Andersen M Arnaud K Asai S Ashikaga S Aymerich P Bessieres F Boland SC Brignell S Bron K Bunai J Chapuis LC Christiansen A Danchin M Debarbouille E Dervyn E Deuerling K Devine SK Devine O Dreesen J Errington S Fillinger SJ Foster Y Fujita A Galizzi R Gardan C Eschevins T Fukushima K Haga CR Harwood M Hecker D Hosoya MF Hullo H Kakeshita D Karamata Y Kasahara F Kawamura K Koga P Koski R Kuwana D Imamura M Ishimaru S Ishikawa I Ishio D Le Coq A Masson C Mauel R Meima RP Mellado A Moir S Moriya E Nagakawa H Nanamiya S Nakai P Nygaard M Ogura T Ohanan M O'Reilly M O'Rourke Z Pragai HM Pooley G Rapoport JP Rawlins LA Rivas C Rivolta A Sadaie Y Sadaie M Sarvas T Sato HH Saxild E Scanlan W Schumann JF Seegers J Sekiguchi A Sekowska SJ Seror M Simon P Stragier R Studer H Takamatsu T Tanaka M Takeuchi HB Thomaides V Vagner JM van Dijl K Watabe A Wipat H Yamamoto M Yamamoto Y Yamamoto K Yamane K Yata K Yoshida H Yoshikawa U Zuber N Ogasawara 2003 Essential Bacillus subtilis genes Proc Natl Acad Sci USA 100 4678 4683 1:CAS:528:DC%2BD3sXjt12ns7o%3D 10.1073/pnas.0730515100 12682299 (Pubitemid 36457789)
19. BV Mistry R Del Sol C Wright K Findlay P Dyson 2008 FtsW is a dispensable cell division protein required for Z-ring stabilization during sporulation septation in Streptomyces coelicolor J Bacteriol 190 5555 5566 1:CAS:528:DC%2BD1cXpslOjtLw%3D 10.1128/JB.00398-08 18556789
20. M Redenbach HM Kieser D Denapaite A Eichner J Cullum H Kinashi DA Hopwood 1996 A set of ordered cosmids and a detailed genetic and physical map for the 8 Mb Streptomyces coelicolor A3(2) chromosome Mol Microbiol 21 77 96 1:CAS:528:DyaK28Xks1Gjtbc%3D 10.1046/j.1365-2958.1996.6191336.x 8843436 (Pubitemid 26233084)
21. A Rodriguez-Garcia P Combes R Perez-Redondo MC Smith MC Smith 2005 Natural and synthetic tetracycline-inducible promoters for use in the antibiotic-producing bacteria Streptomyces Nucleic Acids Res 33 e87 10.1093/nar/gni086 15917435 (Pubitemid 41511253)
22. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual. Cold Spring Harbor, New York
23. J Song F Dong JW Lilly RM Stupar J Jiang 2001 Instability of bacterial artificial chromosome (BAC) clones containing tandemly repeated DNA sequences Genome 44 463 469 1:CAS:528:DC%2BD3MXltFWjsbY%3D 10.1139/gen-44-3-463 11444706 (Pubitemid 32752652)
24. N Suzuki N Okai H Nonaka Y Tsuge M Inui H Yukawa 2006 High-throughput transposon mutagenesis of Corynebacterium glutamicum and construction of a single-gene disruptant mutant library Appl Environ Microbiol 72 3750 3755 1:CAS:528:DC%2BD28XkvFWjtL0%3D 10.1128/AEM.72.5.3750-3755.2006 16672528 (Pubitemid 43728035)