The Novel Marine Gliding Zooflagellate Genus Mantamonas (Mantamonadida ord. n.: Apusozoa)

Protist

Volumn 162, Issue 2, 2011, Pages 207-221

  Glücksman, Edvard ^a   Snell, Elizabeth A ^a   Berney, Cédric ^a   Chao, Ema E ^a   Bass, David ^a   Cavalier Smith, Thomas ^a  

^a UNIVERSITY OF OXFORD   (United Kingdom)

Author keywords

18S rRNA phylogeny; 28S rRNA phylogeny; Apusomonadida; Apusozoa; Mantamonas; Planomonadida

Indexed keywords

PROTOZOAL DNA; RIBOSOME DNA; RNA 18S; RNA 28S; SEA WATER;

ARTICLE; CLASSIFICATION; EUKARYOTE; GENETICS; GROWTH, DEVELOPMENT AND AGING; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PARASITOLOGY; PHYLOGENY;

DNA, PROTOZOAN; DNA, RIBOSOMAL; EUKARYOTA; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 18S; RNA, RIBOSOMAL, 28S; SEAWATER;

AMOEBOZOA; APUSOZOA; EUKARYOTA; FUNGI/METAZOA GROUP; PROTOZOA; UNIKONTA; ZOOMASTIGOPHOREA;

EID: 79952449850     PISSN: 14344610     EISSN: 16180941     Source Type: Journal    
DOI: 10.1016/j.protis.2010.06.004     Document Type: Article

References (59)

1. Alexeieff A. Notes sur quelques protistes coprocoles. Arch Protistenkd 1924, 50:27-49.
2. Atkins M.S., McArthur A.G., Teske A.P. Ancyromonadida: a new phylogenetic lineage among the protozoa closely related to the common ancestor of metazoans, fungi, and choanoflagellates (Opisthokonta). J Mol Evol 2000, 51:278-285.
3. Bass D., Cavalier-Smith T. Phylum-specific environmental DNA analysis reveals remarkably high global biodiversity of Cercozoa (Protozoa). Int J Syst Evol Microbiol 2004, 54:2393-2404.
4. Bass D., Chao E.E., Nikolaev S., Yabuki A., Ishida K., Berney C., Pakzad U., Wylezich C., Cavalier-Smith T. Phylogeny of novel naked filose and reticulose Cercozoa: Granofilosea cl. n. and Proteomyxidea revised. Protist 2009, 160:75-109.
5. Bass D., Howe A.T., Mylnikov A.P., Vickerman K., Chao E.E., Smallbone J.E., Snell J., Cabral C., Cavalier-Smith T. Phylogeny and classification of Cercomonadidae: Cercomonas, Eocercomonas, Paracercomonas, and Cavernomonas gen. n. Protist 2009, 160:483-521.
6. Brugerolle G., Bricheux G., Philippe H., Coffea G. Collodictyon triciliatum and Diphylleia rotans (=Aulacomonas submarina) form a new family of flagellates (Collodictyonidae) with tubular mitochondrial cristae that is phylogenetically distant from other flagellate groups. Protist 2002, 153:59-70.
7. Burki F., Shalchian-Tabrizi K., Pawlowski J. Phylogenomics reveals a new 'megagroup' including most photosynthetic eukaryotes. Biol Lett 2008, 4:366-369.
8. Burki F., Shalchian-Tabrizi K., Minge M., Skjaeveland A., Nikolaev S.I., Jakobsen K.S., Pawlowski J. Phylogenomics reshuffles the eukaryotic supergroups. PLoS ONE 2007, 2:e790.
9. Burki F., Inagaki Y., Bråte J., Archibald J.M., Keeling P.J., Cavalier-Smith T., Sakaguchi M., Hashimoto T., Horak A., Kumar S., Klaveness D., Jakobsen K.S., Pawlowski J., Shalchian-Tabrizi K. Large-scale phylogenomic analyses reveal that two enigmatic protist lineages, Telonemia and Centroheliozoa, are related to photosynthetic chromalveolates. Genome Biol Evol 2009, 1:231-238.
10. Cavalier-Smith T. The phagotrophic origin of eukaryotes and phylogenetic classification of Protozoa. Int J Syst Evol Microbiol 2002, 52:297-354.
11. Cavalier-Smith T. The excavate protozoan phyla Metamonada Grassé emend. (Anaeromonadea, Parabasalia, Carpediemonas, Eopharyngia) and Loukozoa emend. (Jakobea, Malawimonas): their evolutionary affinities and new higher taxa. Int J Syst Evol Microbiol 2003, 53:1741-1758.
12. Cavalier-Smith T. Protist phylogeny and the high-level classifi{ligature}cation of Protozoa. Eur J Protistol 2003, 39:338-348.
13. Cavalier-Smith T (2010a) Kingdoms Protozoa and Chromista and the eozoan root of eukaryotes. Biol Lett 6: 342-345.
14. Cavalier-Smith T. Deep phylogeny, ancestral groups, and the four ages of life. Philos Trans Roy Soc Lond B 2010, 365:111-132.
15. Cavalier-Smith T., Chao E.E. The opalozoan Apusomonas is related to the common ancestor of animals, fungi, and choanoflagellates. Proc Roy Soc Lond B 1995, 261:1-6.
16. Cavalier-Smith T., Chao E.E. Phylogeny and classification of phylum Cercozoa (Protozoa). Protist 2003, 154:341-358.
17. Cavalier-Smith T., Chao E.E. Phylogeny of Choanozoa, Apusozoa, and other Protozoa and early eukaryote megaevolution. J Mol Evol 2003, 56:540-563.
18. Cavalier-Smith T., Chao E.E. Phylogeny and evolution of Apusomonadida (Protozoa: Apusozoa): new genera and species. Protist 2010, 161:549-576.
19. Cavalier-Smith T., Chao E.E., Oates B. Molecular phylogeny of Amoebozoa and the evolutionary significance of the unikont Phalansterium. Eur J Protistol 2004, 40:21-48.
20. Cavalier-Smith T., Lewis R., Chao E.E., Oates B., Bass D. Morphology and phylogeny of Sainouron acronematica sp. n. and the ultrastructural unity of Cercozoa. Protist 2008, 159:591-620.
21. Cavalier-Smith T., Chao E.E., Stechmann A., Oates B., Nikolaev S. Planomonadida ord. nov. (Apusozoa): ultrastructural affinity with Micronuclearia podoventralis and deep divergences within Planomonas gen. nov. Protist 2008, 159:535-562.
22. Cavalier-Smith T., Oates B., Lewis R., Chao E.E., Bass D. Helkesimastix marina n. sp. (Cercozoa: Sainouroidea superfam. n.) a gliding zooflagellate lineage of novel ultrastructure and unique ciliary pattern. Protist 2009, 160:452-479.
23. Chantangsi C., Esson H.J., Leander B.S. Morphology and molecular phylogeny of a marine interstitial tetraflagellate with putative endosymbionts: Auranticordis quadriverberis n. gen. et sp. (Cercozoa). BMC Microbiol 2008, 8:123.
24. Foissner W. Protist diversity and distribution: some basic considerations. Biodivers Conserv 2008, 17:235-242.
25. Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 1999, 41:95-98.
26. Hänel K. Systematik und Ökologie der farblosen Flagellaten des Abwassers. Arch Protistenkd 1979, 121:73-137.
27. Hausmann K., Selchow P., Scheckenbach F., Weitere M., Arndt H. Cryptic species in a morphospecies complex of heterotrophic flagellates: the case study of Caecitellus spp. Acta Protozool 2006, 45:415-431.
28. Heiss A.A., Walker G., Simpson A.G.B. Clarifying the taxonomic identity of a phylogenetically important group of eukaryotes: Planomonas is a junior synonym of Ancyromonas. J Eukaryot Microbiol 2010, 57:285-293.
29. Hoppenrath M., Leander B.S. Dinoflagellate, euglenid, or cercomonad? The ultrastructure and molecular phylogenetic position of Protaspis grandis n. sp. J Eukaryot Microbiol 2006, 53:327-342.
30. Howe A.T., Bass D., Vickerman K., Chao E.E., Cavalier-Smith T. Phylogeny, taxonomy, and astounding genetic diversity of Glissomonadida ord. nov., the dominant gliding zooflagellates in soil (Protozoa: Cercozoa). Protist 2009, 160:159-189.
31. Huelsenbeck J.P., Ronquist F. MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 2001, 17:754-755.
32. Karpov SA, Mylnikov AP (1989) Biology and ultrastructure of colorless flagellates Apusomonadida ord. n. Zool Zh 68: 5-17.
33. Kim E., Simpson A.G., Graham L.E. Evolutionary relationships of apusomonads inferred from taxon-rich analyses of 6 nuclear encoded genes. Mol Biol Evol 2006, 23:2455-2466.
34. Lara E., Moreira D., Vereshchaka A., López-García P. Pan-oceanic distribution of new highly diverse clades of deep-sea diplonemids. Environ Microbiol 2009, 11:47-55.
35. Larsen J., Patterson D.J. Some fl{ligature}agellates (Protista) from tropical marine sediments. J Nat Hist 1990, 24:801-937.
36. Liu Y., Steenkamp E.T., Brinkmann H., Forget L., Philippe H., Lang B.F. Phylogenomic analyses predict sistergroup relationship of nucleariids and fungi and paraphyly of zygomycetes with significant support. BMC Evol Biol 2009, 9:272.
37. Marande W., López-García P., Moreira D. Eukaryotic diversity and phylogeny using small- and large-subunit ribosomal RNA genes from environmental samples. Environ Microbiol 2009, 11:3179-3188.
38. Mikrjukov K.A., Mylnikov A.P. A study of the fi{ligature}ne structure and the mitosis of a lamellicristate amoeba, Micronuclearia podoventralis gen. et sp. nov. (Nucleariidae, Rotosphaerida). Eur J Protistol 2001, 37:15-24.
39. Minge M., Silberman J.D., Orr R., Cavalier-Smith T., Shalchian-Tabrizi K., Burki F., Skjaeveland Å., Jakobsen K.S. Evolutionary position of breviate amoebae illuminates the primary eukaryote divergence. Philos Trans Roy Soc Lond B 2009, 276:597-604.
40. Moreira D., von der Heyden S., Bass D., López-García P., Chao E., Cavalier-Smith T. Global eukaryote phylogeny: combined small- and large-subunit ribosomal DNA trees support monophyly of Rhizaria, Retaria and Excavata. Mol Phyl Evol 2007, 44:255-266.
41. Patterson D.J., Lee W.J. Geographic Distribution and Diversity of Free-living Heterotrophic Flagellates. The Flagellates: Unity, Diversity and Evolution 2000, 269-287. Taylor and Francis, London. B.S.C. Leadbeater, J.C. Green (Eds.).
42. Patterson D.J., Simpson A.G.B. Heterotrophic flagellates from coastal marine and hypersaline sediments in Western Australia. Eur J Protistol 1996, 32:423-448.
43. Patterson D.J., Zölfell M. Heterotrophic Flagellates of Uncertain Taxonomic Position. The Biology of Free-Living Heterotrophic Flagellates 1991, 427-476. Clarendon Press, Oxford. D.J. Patterson, J. Larsen (Eds.).
44. Richards T.A., Bass D. Molecular screening of free-living microbial eukaryotes: diversity and distribution using a meta-analysis. Curr Opin Microbiol 2005, 8:240-252.
45. Richards T.A., Cavalier-Smith T. Myosin domain evolution and the primary divergence of eukaryotes. Nature 2005, 436:1113-1118.
46. Roger A., Simpson A.G.B. Evolution: revisiting the root of the eukaryotic tree. Curr Biol 2009, 19:R165-167.
47. Ronquist F., Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574.
48. Šlapeta J., Moreira D., López-García P. The extent of protist diversity: Insights from molecular ecology of freshwater eukaryotes. Proc Roy Soc Lond B 2005, 272:2073-2081.
49. Smirnov A.V., Nassonova E., Cavalier-Smith T. Correct identification of species makes the amoebozoan rRNA tree congruent with morphology for the order Leptomyxida Page 1987; with description of Acramoeba dendroida n. g., n. sp., originally misidentified as 'Gephyramoeba sp.'. Eur J Protistol 2008, 44:35-44.
50. Smirnov AV, Chao EE, Nassonova E, Cavalier-Smith T (2010) Revised classification of non-mycetozoan naked lobose amoebae (Amoebozoa). Protist submitted.
51. Smirnov A.V., Nassonova E.S., Chao E.E., Cavalier-Smith T. Phylogeny, evolution and taxonomy of vannellid amoebae. Protist 2007, 158:295-324.
52. Stamatakis A., Ludwig T., Meier H. RAxML-iii: a fast program for maximum likelihood-based inference of large phylogenetic trees. Bioinformatics 2005, 21:456-463.
53. Stechmann A., Cavalier-Smith T. Rooting the eukaryote tree by using a derived gene fusion. Science 2002, 297:89-91.
54. Stechmann A., Cavalier-Smith T. Phylogenetic analysis of eukaryotes using heat-shock protein Hsp90. J Mol Evol 2003, 57:408-419.
55. Stechmann A., Cavalier-Smith T. The root of the eukaryote tree pinpointed. Curr Biol 2003, 13:R665-R666.
56. Swofford DW (1999) PAUP 4.0b10. Sinauer, Sunderland, MS.
57. Vickerman K., Darbyshire J.F., Ogden C.G. Apusomonas proboscidea Aléxéieff 1924 an unusual phagotrophic flagellate from soil. Arch Protistenkd 1974, 116:254-269.
58. Walker G., Dacks J.B., Embley T.M. Ultrastructural description of Breviata anathema, n. gen., n. sp., the organism previously studied as " Mastigamoeba invertens" J Eukaryot Microbiol 2006, 53:65-78.
59. Yoon H.S., Grant J., Tekle Y.I., Wu M., Chaon B.C., Cole J.C., Logsdon J.M., Patterson D.J., Bhattacharya D., Katz L.A. Broadly sampled multigene trees of eukaryotes. BMC Evol Biol 2008, 8:14.