Dynamic clamp with StdpC software

Nature Protocols

Volumn 6, Issue 3, 2011, Pages 405-417

  Kemenes, Ildikó ^a   Marra, Vincenzo ^a   Crossley, Michael ^a   Samu, Dávid ^a   Staras, Kevin ^a   Kemenes, György ^a   Nowotny, Thomas ^a  

^a UNIVERSITY OF SUSSEX   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; AUTOMATION; COMPUTER ANALYSIS; COMPUTER PROGRAM; COMPUTER SYSTEM; DYNAMIC CLAMP; ELECTRICAL EQUIPMENT; HODGKIN HUXLEY EQUATION; NERVE CELL MEMBRANE POTENTIAL; NERVE CELL PLASTICITY; NERVOUS SYSTEM ELECTROPHYSIOLOGY; NONHUMAN; PRIORITY JOURNAL;

ALGORITHMS; COMPUTER SYSTEMS; ELECTRIC STIMULATION; ELECTROPHYSIOLOGY; MEMBRANE POTENTIALS; MICROELECTRODES; MODELS, NEUROLOGICAL; NEURONS; PATCH-CLAMP TECHNIQUES; SOFTWARE; SYNAPSES;

EID: 79952404030     PISSN: 17542189     EISSN: 17502799     Source Type: Journal    
DOI: 10.1038/nprot.2010.200     Document Type: Article

References (51)

1. Robinson, H.P. & Kawai, N. Injection of digitally synthesized synaptic conductance transients to measure the integrative properties of neurons. J. Neurosci. Meth. 49, 157-165 (1993). (Pubitemid 23350479)
2. Sharp, A.A., O'Neil, M.B., Abbott, L.F. & Marder, E. The dynamic clamp: artifcial conductances in biological neurons. Trends Neurosci. 16, 389-394 (1993). (Pubitemid 23283398)
3. Sharp, A.A., Skinner, F.K. & Marder, E. Mechanisms of oscillation in dynamic clamp constructed two-cell half-center circuits. J. Neurophysiol. 76, 867-883 (1996). (Pubitemid 26284575)
4. Elson, R.C., Selverston, A.I., Abarbanel, H.D.I. & Rabinovich, M.I. Inhibitory synchronization of bursting in biological neurons: dependence on synaptic time constant. J. Neurophysiol. 88, 1166-1176 (2002). (Pubitemid 35025371)
5. Szücs, A., Elson, R.C., Rabinovich, M.I., Abarbanel, H.D.I. & Selverston, A.I. Nonlinear behavior of sinusoidally forced pyloric pacemaker neurons. J. Neurophysiol. 85, 1623-1638 (2001). (Pubitemid 32280603)
6. Nowotny, T., Zhigulin, V.P., Selverston, A.I., Abarbanel, H.D. & Rabinovich, M.I. Enhancement of synchronization in a hybrid neural circuit by spike-timing dependant plasticity. J. Neurosci. 23, 9776-9785 (2003). (Pubitemid 37371590)
7. Nowotny, T., Szücs, A., Pinto, R.D. & Selverston, A.I. Stdpc: a modern dynamic clamp. J. Neurosci. Meth. 158, 287-299 (2006). (Pubitemid 44738072)
8. Rothman, J.S., Cathala, L., Steuber, V. & Silver, R.A. Synaptic depression enables neuronal gain control. Nature 457, 1015-1018 (2009).
9. Netoff, T.I. et al. Synchronization in hybrid neuronal networks of the hippocampal formation. J. Neurophysiol. 93, 1197-1208 (2005). (Pubitemid 40283711)
10. Selverston, A.I. et al. Reliable circuits from irregular neurons: a dynamical approach to understanding central pattern generators. J. Physiol. Paris. 94, 357-374 (2000). (Pubitemid 32110920)
11. Szücs, A., Berton, F., Nowotny, T., Sanna, P. & Francesconi, W. Consistency and diversity of spike dynamics in the neurons of bed nucleus of stria terminalis of the rat: a dynamic clamp study. PLoS ONE 5, e11920 (2010).
12. Szücs, A., Vehovszky, A., Molnar, G., Pinto, R.D. & Abarbanel, H.D.I. Reliability and precision of neural spike timing: Simulation of spectrally broadband synaptic inputs. Neuroscience 126, 1063-1073 (2004). (Pubitemid 38786454)
13. Szücs, A., Huerta, R., Rabinovich, M.I. & Selverston, A.I. Robust microcircuit synchronization by inhibitory connections. Neuron 61, 439-453 (2009).
14. Kros, CJ., Ruppersberg, J.P. & Rüsch, A. Expression of a potassium current in inner hair cells during development of hearing in mice. Nature 394, 281-284 (1998). (Pubitemid 28335040)
15. Oltedal, L., Veruki, M.L. & Hartveit, E. Passive membrane properties and electrotonic signal processing in retinal rod bipolar cells. J. Physiol. 587, 829-849 (2009).
16. Desai, N.S. & Walcott, E.C. Synaptic bombardment modulates muscarinic effects in forelimb motor cortex. J. Neurosci. 26, 2215-2226 (2006). (Pubitemid 44699030)
17. Kinard, T.A., de Vries, G., Sherman, A. & Satin, L.S. Modulation of the bursting properties of single mouse pancreatic beta-cells by artifcial conductances. Biophys. J. 76, 1423-1435 (1999). (Pubitemid 29262622)
18. Bertram, R., Previte, J., Sherman, A., Kinard, T.A. & Satin, L.S. The phantom burster model for pancreatic beta-cells. Biophys. J. 79, 2880-2892 (2000).
19. Watanabe, E.I., Honjo, H., Anno, T., Boyett, M.R., Kodama, I. & Toyama, J. Modulation of pacemaker activity of sinoatrial node cells by electrical load imposed by an atrial cell model. Am. J. Physiol. 269, H1735-H1742 (1995).
20. Wilders, R. et al. Action potential conduction between a ventricular cell model and an isolated ventricular cell. Biophys. J. 70, 281-295 (1996). (Pubitemid 26021466)
21. Berecki, G. et al. HERG channel (dys)function revealed by dynamic action potential clamp technique. Biophys. J. 88, 566-578 (2005). (Pubitemid 40070702)
22. Wheeler, D.W., Kullmann, P.H. & Horn, J.P. Estimating use-dependent synaptic gain in autonomic ganglia by computational simulation and dynamic-clamp analysis. J. Neurophysiol. 92, 2659-2671 (2004). (Pubitemid 40340479)
23. Horn, J.P. & Kullmann, P.H. Dynamic clamp analysis of synaptic integration in sympathetic ganglia. Neirofziologiia 39, 423-429 (2007).
24. Muñiz, C., Levi, R., Benkrid, M., Rodríguez, F.B. & Varona, P. Real-time control of stepper motors for mechanosensory stimulation. J. Neurosci. Meth. 172, 105-111 (2008).
25. Chamorro, P., Levi, R., Rodriguez, F.B., Pinto, R.D. & Varona, P. Real-time activity-dependent drug microinjection. BMC Neurosci. 10, 296 (2009).
26. Prinz, A.A., Abbott, L.F. & Marder, E. The dynamic clamp comes of age. Trends Neurosci. 27, 218-224 (2004). (Pubitemid 38376409)
27. Goaillard, J.-M. & Marder, E. Dynamic clamp analyses of cardiac, endocrine, and neural function. Physiology 21, 197-207 (2006). (Pubitemid 43801249)
28. Economo, M.N., Fernandez, F.R. & White, J.A. Dynamic clamp: alteration of response properties and creation of virtual realities in neurophysiology. J. Neurosci. 30, 2407-2413 (2010).
29. Destexhe, A. & Bal, T. (eds.) Dynamic Clamp: From Principles to Applications (Springer, 2009).
30. Wilders, R. Dynamic clamp: a powerful tool in cardiac electrophysiology. J. Physiol. 576, 349-359 (2006). (Pubitemid 44499449)
31. Pinto, R.D. et al. Extended dynamic clamp: controlling up to four neurons using a single desktop computer interface. J. Neurosci Meth. 108, 39-48 (2001). (Pubitemid 32664040)
32. Song, S., Miller, K.D. & Abbott, L.F. Competitive Hebbian learning through spike-timing-dependent synaptic plasticity. Nat Neurosci. 3, 919-926 (2000).
33. Abarbanel, H.D.I., Huerta, R. & Rabinovich, M.I. Dynamical model of long-term synaptic plasticity. Proc Natl. Acad. Sci. USA 99, 101-136 (2002).
34. Brette, R. et al. High-resolution intracellular recordings using a real-time computational model of the electrode. Neuron 59, 379-391 (2008).
35. Brette, R., Piwkowska, Z., Rudolph, M., Bal, T. & Destexhe, A. A non-parametric electrode model for intracellular recording. Neurocomput 70, 1597-1601 (2007). (Pubitemid 46671090)
36. Company of Biologists. Microelectrode Techniques: the Plymouth Workshop Handbook (eds. Standen, N.B., Gray, P.T.A., & Whitaker, M.J., Company of Biologists, 1987).
37. Molecular Devices. The Axon Guide: a Guide To Electrophysiology & Biophysics Laboratory Techniques, Technical Report, Analytical Technologies, http://fles.axon.com/downloads/manuals/Axon-Guide.pdf (2008).
38. Staras, K., Gyóri, J. & Kemenes, G. Voltage-gated ionic currents in an identifed modulatory cell type controlling molluscan feeding. Eur. J. Neurosci. 15, 109-119 (2002). (Pubitemid 35478014)
39. Traub, R.D. & Miles, R. Neuronal Networks of the Hippocampus (Cambridge University Press, 1991).
40. Banker, G. & Goslin, K. Culturing Nerve Cells (MIT Press, 1998).
41. Branco, T., Staras, K., Darcy, K.J. & Goda, Y. Local dendritic activity sets release probability at hippocampal synapses. Neuron 59, 475-485 (2008).
42. Hamill, O.P., Marty, A., Neher, E., Sakmann, B. & Sigworth, FJ. Improved patch clamp techniques for high-resolution current recording from cells and cell-free membrane patches. Pfügers Arch. 391, 85-100 (1981). (Pubitemid 11012976)
43. Dorval, A.D., Christini, DJ. & White, J.A. Real-time linux dynamic clamp: a fast and fexible way to construct virtual ion channels in living cells. Ann. Biomed. Eng. 29, 897-907 (2001). (Pubitemid 33147206)
44. Butera, RJ. Jr., Wilson, C.G., DelNegro, C.A. & Smith, J.C. A methodology for achieving high-speed rates for artifcial conductance injection in electrically excitable biological cells. IEEE Trans. Biomed. Eng. 48, 1460-1470 (2001). (Pubitemid 33108450)
45. Culianu, C.A. & Christini, DJ. Real-time Linux experiment interface system: RTLab. Proceedings of the IEEE 29th Annual Northeast Bioengineering Conference, Newark, New Jersey USA. 51-52 (2003).
46. Bettencourt, J.C., Lillis, K.P., Stupin, L.R. & White, J.A. Effects of imperfect dynamic clamp: computational and experimental results. J. Neurosci. Meth. 169, 282-289 (2008).
47. Preyer, AJ. & Butera, R.J. Causes of transient instabilities in the dynamic clamp. IEEE Trans. Neural Syst Rehabil. Eng. 17, 190-198 (2009).
48. Kullmann, P.H.M., Wheeler, D.W., Beacom, J. & Horn, J.P. Implementation of a fast 16-bit dynamic clamp using LabVIEW-RT. J. Neurophysiol. 91, 542-554 (2004). (Pubitemid 38084393)
49. Robinson, H.P.C. A scriptable DSP-based system for dynamic conductance injection. J. Neurosci. Meth. 169, 271-281 (2008).
50. Milescu, L.S., Yamanishi, T., Ptak, K., Mogri, M.Z. & Smith, J.C. Real-time kinetic modeling of voltage-gated ion channels using dynamic clamp. Biophys. J. 95, 66-87 (2008).
51. Muñiz, C., Rodriguez, F.B. & Varona, P. RTBiomanager: a software platform to expand the applications of real-time technology in neuroscience. BMC Neurosci. 10, 49 (2009).