-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW & Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.1
Gish, W.2
Miller, W.3
Myers, E.4
Lipman, D.5
-
2
-
-
0346106077
-
Vibrio coralliilyticus sp. nov., a temperature-dependent pathogen of the coral Pocillopora damicornis
-
Ben-Haim Y, Thompson FL, Thompson CC, Cnockaert MC, Hoste B, Swings J & Rosenberg E (2003) Vibrio coralliilyticus sp. nov., a temperature-dependent pathogen of the coral Pocillopora damicornis. Int J Syst Evol Micr 53: 309-315.
-
(2003)
Int J Syst Evol Micr
, vol.53
, pp. 309-315
-
-
Ben-Haim, Y.1
Thompson, F.2
Thompson, C.3
Cnockaert, M.4
Hoste, B.5
Swings, J.6
Rosenberg, E.7
-
3
-
-
15444370404
-
Coexistence of bacterial sulfide oxidizers, sulfate reducers, and spirochetes in a gutless worm (Oligochaeta) from the Peru margin
-
Blazejak A, Erseus C, Amann R & Dubilier N (2005) Coexistence of bacterial sulfide oxidizers, sulfate reducers, and spirochetes in a gutless worm (Oligochaeta) from the Peru margin. Appl Environ Microb 71: 1553-1561.
-
(2005)
Appl Environ Microb
, vol.71
, pp. 1553-1561
-
-
Blazejak, A.1
Erseus, C.2
Amann, R.3
Dubilier, N.4
-
4
-
-
22744438425
-
Diversity of bacteria associated with the coral Pocillopora damicornis from the Great Barrier Reef
-
Bourne DG & Munn CB (2005) Diversity of bacteria associated with the coral Pocillopora damicornis from the Great Barrier Reef. Environ Microbiol 7: 1162-1174.
-
(2005)
Environ Microbiol
, vol.7
, pp. 1162-1174
-
-
Bourne, D.1
Munn, C.2
-
5
-
-
35349031195
-
Diversity of the bacterial communities associated with the azooxanthellate deep-water octocorals Leptogorgia minimata, Iciligorgia schrammi, and Swiftia exertia
-
Brück TB, Brück WM, Santiago-Vázquez LZ, McCarthy PJ & Kerr RG (2007) Diversity of the bacterial communities associated with the azooxanthellate deep-water octocorals Leptogorgia minimata, Iciligorgia schrammi, and Swiftia exertia. Mar Biotechnol 9: 561-567.
-
(2007)
Mar Biotechnol
, vol.9
, pp. 561-567
-
-
Brück, T.1
Brück, W.2
Santiago-Vázquez, L.3
Mccarthy, P.4
Kerr, R.5
-
7
-
-
6944236018
-
Widespread association of a Rickettsiales-like bacterium with reef-building corals
-
Casas V, Kline DI, Wegley L, Yu YN, Breitbart M & Rohwer F (2004) Widespread association of a Rickettsiales-like bacterium with reef-building corals. Environ Microbiol 6: 1137-1148.
-
(2004)
Environ Microbiol
, vol.6
, pp. 1137-1148
-
-
Casas, V.1
Kline, D.2
Wegley, L.3
Yu, Y.4
Breitbart, M.5
Rohwer, F.6
-
9
-
-
0031856007
-
Neocalanus scattering layers near the western Aleutian Islands
-
Coyle KO (1998) Neocalanus scattering layers near the western Aleutian Islands. J Plankton Res 20: 1189-1202.
-
(1998)
J Plankton Res
, vol.20
, pp. 1189-1202
-
-
Coyle, K.1
-
10
-
-
0031832138
-
Field preservation of marine invertebrate tissue for DNA analysis
-
Dawson MN, Raskoff KA & Jacobs DK (1998) Field preservation of marine invertebrate tissue for DNA analysis. Mol Mar Microbiol 7: 145-152.
-
(1998)
Mol Mar Microbiol
, vol.7
, pp. 145-152
-
-
Dawson, M.1
Raskoff, K.2
Jacobs, D.3
-
11
-
-
33746061683
-
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
-
DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, Keller K, Huber T, Dalevi D, Hu P & Andersen GL (2006) Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl Environ Microb 72: 5069-5072.
-
(2006)
Appl Environ Microb
, vol.72
, pp. 5069-5072
-
-
Desantis, T.1
Hugenholtz, P.2
Larsen, N.3
Rojas, M.4
Brodie, E.5
Keller, K.6
Huber, T.7
Dalevi, D.8
Hu, P.9
Andersen, G.10
-
12
-
-
0024444791
-
Isolation and direct complete nucleotide determination of entire genes - characterization of a gene coding for 16s-ribosomal RNA
-
Edwards U, Rogall T, Blocker H, Emde M & Bottger EC (1989) Isolation and direct complete nucleotide determination of entire genes - characterization of a gene coding for 16s-ribosomal RNA. Nucleic Acids Res 17: 7843-7853.
-
(1989)
Nucleic Acids Res
, vol.17
, pp. 7843-7853
-
-
Edwards, U.1
Rogall, T.2
Blocker, H.3
Emde, M.4
Bottger, E.5
-
13
-
-
0031978181
-
Base-calling of automated sequencer traces using phred. II. Error probabilities
-
Ewing B & Green P (1998) Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res 8: 186-194.
-
(1998)
Genome Res
, vol.8
, pp. 186-194
-
-
Ewing, B.1
Green, P.2
-
14
-
-
0031955518
-
Base-calling of automated sequencer traces using phred. I. Accuracy assessment
-
Ewing B, Hillier L, Wendl MC & Green P (1998) Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res 8: 175-185.
-
(1998)
Genome Res
, vol.8
, pp. 175-185
-
-
Ewing, B.1
Hillier, L.2
Wendl, M.3
Green, P.4
-
15
-
-
53749106312
-
Steroidobacter denitrificans gen. nov., sp. nov., a steroidal hormone-degrading Gammaproteobacterium
-
Fahrbach M, Kuever J, Remesch M, Huber BE, Kampfer P, Dott W & Hollender J (2008) Steroidobacter denitrificans gen. nov., sp. nov., a steroidal hormone-degrading Gammaproteobacterium. Int J Syst Evol Micr 58: 2215-2223.
-
(2008)
Int J Syst Evol Micr
, vol.58
, pp. 2215-2223
-
-
Fahrbach, M.1
Kuever, J.2
Remesch, M.3
Huber, B.4
Kampfer, P.5
Dott, W.6
Hollender, J.7
-
17
-
-
74049110075
-
Community composition of bacteria associated with cold-water coral Madrepora oculata
-
Mar Ecol-Prog Ser -
-
Hansson L, Agis M, Maier C & Weinbauer MG (2009) Community composition of bacteria associated with cold-water coral Madrepora oculata: within and between colony variability. Mar Ecol-Prog Ser 397: 89-102.
-
(2009)
within and between colony variability
, vol.397
, pp. 89-102
-
-
Hansson, L.1
Agis, M.2
Maier, C.3
Weinbauer, M.4
-
19
-
-
28344455456
-
Corals of the Aleutian Islands
-
Heifetz J, Wing BL, Stone RP, Malecha PW & Courtney DL (2005) Corals of the Aleutian Islands. Fish Oceanogr 14: 131-138.
-
(2005)
Fish Oceanogr
, vol.14
, pp. 131-138
-
-
Heifetz, J.1
Wing, B.2
Stone, R.3
Malecha, P.4
Courtney, D.5
-
21
-
-
33644505436
-
Biogeographical distribution and diversity of microbes in methane hydrate-bearing deep marine sediments on the Pacific Ocean Margin
-
Inagaki F, Nunoura T, Nakagawa S et al. (2006) Biogeographical distribution and diversity of microbes in methane hydrate-bearing deep marine sediments on the Pacific Ocean Margin. P Natl Acad Sci USA 103: 2815-2820.
-
(2006)
P Natl Acad Sci USA
, vol.103
, pp. 2815-2820
-
-
Inagaki, F.1
Nunoura, T.2
Nakagawa, S.3
-
22
-
-
64749102782
-
Culture-independent characterization of bacterial communities associated with the cold-water coral Lophelia pertusa in the northeastern Gulf of Mexico
-
Kellogg CA, Lisle JT & Galkiewicz JP (2009) Culture-independent characterization of bacterial communities associated with the cold-water coral Lophelia pertusa in the northeastern Gulf of Mexico. Appl Environ Microb 75: 2294-2303.
-
(2009)
Appl Environ Microb
, vol.75
, pp. 2294-2303
-
-
Kellogg, C.1
Lisle, J.2
Galkiewicz, J.3
-
23
-
-
0000930604
-
A new selective isolation medium for pathogenic Vibrios
-
Jpn J Bacteriol -
-
Kobayashi T, Enomoto S & Sakazaki R (1963) A new selective isolation medium for pathogenic Vibrios: TCBS Agar. Jpn J Bacteriol 18: 391-397.
-
(1963)
TCBS Agar
, vol.18
, pp. 391-397
-
-
Kobayashi, T.1
Enomoto, S.2
Sakazaki, R.3
-
25
-
-
0034922401
-
Vibrio shiloii sp. nov., the causative agent of bleaching of the coral Oculina patagonica
-
Kushmaro A, Banin E, Loya Y, Stackebrandt E & Rosenberg E (2001) Vibrio shiloii sp. nov., the causative agent of bleaching of the coral Oculina patagonica. Int J Biometerol 51: 1383-1388.
-
(2001)
Int J Biometerol
, vol.51
, pp. 1383-1388
-
-
Kushmaro, A.1
Banin, E.2
Loya, Y.3
Stackebrandt, E.4
Rosenberg, E.5
-
26
-
-
33748508882
-
Diversity of culturable bacteria in the mucus of the Red Sea coral Fungia scutaria
-
Lampert Y, Kelman D, Dubinsky Z, Nitzan Y & Hill RT (2006) Diversity of culturable bacteria in the mucus of the Red Sea coral Fungia scutaria. FEMS Microbiol Ecol 58: 99-108.
-
(2006)
FEMS Microbiol Ecol
, vol.58
, pp. 99-108
-
-
Lampert, Y.1
Kelman, D.2
Dubinsky, Z.3
Nitzan, Y.4
Hill, R.5
-
28
-
-
27044438375
-
Heterotrophy in diatoms
-
Lewin JC (1953) Heterotrophy in diatoms. J Gen Microbiol 9: 305-313.
-
(1953)
J Gen Microbiol
, vol.9
, pp. 305-313
-
-
Lewin, J.1
-
29
-
-
23344439437
-
The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses
-
Methe BA, Nelson KE, Deming JW et al. (2005) The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses. P Natl Acad Sci USA 102: 10913-10918.
-
(2005)
P Natl Acad Sci USA
, vol.102
, pp. 10913-10918
-
-
Methe, B.1
Nelson, K.2
Deming, J.3
-
30
-
-
0036991395
-
Winter mixed layer and formation of dichothermal water in the Bering Sea
-
Miura T, Suga T & Hanawa K (2002) Winter mixed layer and formation of dichothermal water in the Bering Sea. J Oceanogr 58: 815-823.
-
(2002)
J Oceanogr
, vol.58
, pp. 815-823
-
-
Miura, T.1
Suga, T.2
Hanawa, K.3
-
31
-
-
57149110226
-
Phenotype-specific bacterial communities in the cold-water coral Lophelia pertusa (Scleractinia) and their implications for the coral's nutrition, health, and distribution
-
Neulinger SC, Järnegren J, Ludvigsen M, Lochte K & Dullo W-C (2008) Phenotype-specific bacterial communities in the cold-water coral Lophelia pertusa (Scleractinia) and their implications for the coral's nutrition, health, and distribution. Appl Environ Microb 74: 7272-7285.
-
(2008)
Appl Environ Microb
, vol.74
, pp. 7272-7285
-
-
Neulinger, S.1
Järnegren, J.2
Ludvigsen, M.3
Lochte, K.4
Dullo, W.-C.5
-
32
-
-
61649083561
-
Tissue-associated 'Candidatus Mycoplasma corallicola' and filamentous bacteria on the cold-water coral Lophelia pertusa (Scleractinia)
-
Neulinger SC, Gärtner A, Järnegren J, Ludvigsen M, Lochte K & Dullo W-C (2009) Tissue-associated 'Candidatus Mycoplasma corallicola' and filamentous bacteria on the cold-water coral Lophelia pertusa (Scleractinia). Appl Environ Microb 75: 1437-1444.
-
(2009)
Appl Environ Microb
, vol.75
, pp. 1437-1444
-
-
Neulinger, S.1
Gärtner, A.2
Järnegren, J.3
Ludvigsen, M.4
Lochte, K.5
Dullo, W.-C.6
-
33
-
-
33144484401
-
Characterization of bacterial communities associated with deep-sea corals on Gulf of Alaska seamounts
-
Penn K, Wu D, Eisen JA & Ward N (2006) Characterization of bacterial communities associated with deep-sea corals on Gulf of Alaska seamounts. Appl Environ Microb 72: 1680-1683.
-
(2006)
Appl Environ Microb
, vol.72
, pp. 1680-1683
-
-
Penn, K.1
Wu, D.2
Eisen, J.3
Ward, N.4
-
34
-
-
33750201132
-
Regulation of microbial populations by coral surface mucus and mucus-associated bacteria
-
Ritchie KB (2006) Regulation of microbial populations by coral surface mucus and mucus-associated bacteria. Mar Ecol-Prog Ser 322: 1-14.
-
(2006)
Mar Ecol-Prog Ser
, vol.322
, pp. 1-14
-
-
Ritchie, K.1
-
36
-
-
72949107142
-
Introducing mothur
-
Appl Environ Microb.
-
Schloss PD, Westcott SL, Ryabin T et al. (2009) Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microb 75: 7537-7541.
-
(2009)
open-source, platform-independent, community-supported software for describing and comparing microbial communities
, vol.75
, pp. 7537-7541
-
-
Schloss, P.1
Westcott, S.2
Ryabin, T.3
-
37
-
-
67549142694
-
Inter- and intra-habitat bacterial diversity associated with cold-water corals
-
Schöttner S, Hoffmann F, Wild C, Rapp HT, Boetius A & Ramette A (2009) Inter- and intra-habitat bacterial diversity associated with cold-water corals. ISME J 3: 756-759.
-
(2009)
ISME J
, vol.3
, pp. 756-759
-
-
Schöttner, S.1
Hoffmann, F.2
Wild, C.3
Rapp, H.4
Boetius, A.5
Ramette, A.6
-
38
-
-
33748785148
-
Microbial communities in the surface mucopolysaccharide layer and the black band microbial mat of black band-diseased Siderastrea siderea
-
Sekar R, Mills DK, Remily ER, Voss JD & Richardson LL (2006) Microbial communities in the surface mucopolysaccharide layer and the black band microbial mat of black band-diseased Siderastrea siderea. Appl Environ Microb 72: 5963-5973.
-
(2006)
Appl Environ Microb
, vol.72
, pp. 5963-5973
-
-
Sekar, R.1
Mills, D.2
Remily, E.3
Voss, J.4
Richardson, L.5
-
39
-
-
0000696975
-
Nitrogenase activity of bacteria associated with Halodule wrightii roots
-
Smith GW & Hayasaka SS (1982) Nitrogenase activity of bacteria associated with Halodule wrightii roots. Appl Environ Microb 43: 1244-1248.
-
(1982)
Appl Environ Microb
, vol.43
, pp. 1244-1248
-
-
Smith, G.1
Hayasaka, S.2
-
40
-
-
0000665623
-
Handbook of New Bacterial Systematics
-
Goodfellow M & O'Donnell AG, eds) - Academic Press, London, UK.
-
Stackebrandt E & Liesack W (1993) Nucleic acids and classification. Handbook of New Bacterial Systematics (Goodfellow M & O'Donnell AG, eds), pp. 152-189. Academic Press, London, UK.
-
(1993)
Nucleic acids and classification
, pp. 152-189
-
-
Stackebrandt, E.1
Liesack, W.2
-
42
-
-
69849086614
-
The State of Deep Coral Ecosystems in the United States, NOAA Technical Memorandum CRCP-3
-
gulf of Alaska. (Lumsden SE, Hourigan TF, Bruckner AW & Dorr G, eds) - Silver Spring, MD.
-
Stone RP & Shotwell SK (2007) State of deep coral ecosystems in the Alaska region: gulf of Alaska. The State of Deep Coral Ecosystems in the United States, NOAA Technical Memorandum CRCP-3 (Lumsden SE, Hourigan TF, Bruckner AW & Dorr G, eds), pp. 65-108. Silver Spring, MD.
-
(2007)
State of deep coral ecosystems in the Alaska region
, pp. 65-108
-
-
Stone, R.1
Shotwell, S.2
-
43
-
-
67349105701
-
Bacterial diversity and white plague disease-associated community changes in the Caribbean coral Montastraea faveolata
-
Sunagawa S, DeSantis TZ, Piceno YM, Brodie EL, DeSalvo MK, Voolstra CR, Weil E, Andersen GL & Medina M (2009) Bacterial diversity and white plague disease-associated community changes in the Caribbean coral Montastraea faveolata. ISME J 3: 512-521.
-
(2009)
ISME J
, vol.3
, pp. 512-521
-
-
Sunagawa, S.1
Desantis, T.2
Piceno, Y.3
Brodie, E.4
Desalvo, M.5
Voolstra, C.6
Weil, E.7
Andersen, G.8
Medina, M.9
-
44
-
-
34250733462
-
Sponge-associated microorganisms
-
Microbiol Mol Biol Rev -
-
Taylor MW, Radax R, Steger D & Wagner M (2007) Sponge-associated microorganisms: evolution, ecology, and biotechnological potential. Microbiol Mol Biol Rev 71: 295-347.
-
(2007)
evolution, ecology, and biotechnological potential
, vol.71
, pp. 295-347
-
-
Taylor, M.1
Radax, R.2
Steger, D.3
Wagner, M.4
-
45
-
-
68249143124
-
Metagenomic analysis of stressed coral holobionts
-
Thurber RV, Willner-Hall D, Rodriguez-Mueller B, Desnues C, Edwards RA, Angly F, Dinsdale E, Kelly L & Rohwer F (2009) Metagenomic analysis of stressed coral holobionts. Environ Microbiol 11: 2148-2163.
-
(2009)
Environ Microbiol
, vol.11
, pp. 2148-2163
-
-
Thurber, R.1
Willner-Hall, D.2
Rodriguez-Mueller, B.3
Desnues, C.4
Edwards, R.5
Angly, F.6
Dinsdale, E.7
Kelly, L.8
Rohwer, F.9
-
46
-
-
30144439304
-
Phylogenetic survey of metabolically active microbial communities associated with the deep-sea coral Lophelia pertusa from the Apulian Plateau, Central Mediterranean Sea
-
Yakimov MM, Cappello S, Crisafi E, Trusi A, Savini A, Corselli C, Scarfi S & Giuliano L (2006) Phylogenetic survey of metabolically active microbial communities associated with the deep-sea coral Lophelia pertusa from the Apulian Plateau, Central Mediterranean Sea. Deep Sea Res 53: 62-75.
-
(2006)
Deep Sea Res
, vol.53
, pp. 62-75
-
-
Yakimov, M.1
Cappello, S.2
Crisafi, E.3
Trusi, A.4
Savini, A.5
Corselli, C.6
Scarfi, S.7
Giuliano, L.8
-
47
-
-
34249016262
-
Coraliomargarita akajimensis gen. nov., sp. nov., a novel member of the phylum 'Verrucomicrobia' isolated from seawater in Japan
-
Yoon J, Yasumoto-Hirose M, Katsuta A, Sekiguchi H, Matsuda S, Kasai H & Yokota A (2007) Coraliomargarita akajimensis gen. nov., sp. nov., a novel member of the phylum 'Verrucomicrobia' isolated from seawater in Japan. Int J Syst Evol Micr 57: 959-963.
-
(2007)
Int J Syst Evol Micr
, vol.57
, pp. 959-963
-
-
Yoon, J.1
Yasumoto-Hirose, M.2
Katsuta, A.3
Sekiguchi, H.4
Matsuda, S.5
Kasai, H.6
Yokota, A.7
-
49
-
-
56449107383
-
Globally distributed uncultivated oceanic N-2-fixing cyanobacteria lack oxygenic photosystem II
-
Zehr JP, Bench SR, Carter BJ, Hewson I, Niazi F, Shi T, Tripp HJ & Affourtit JP (2008) Globally distributed uncultivated oceanic N-2-fixing cyanobacteria lack oxygenic photosystem II. Science 322: 1110-1112.
-
(2008)
Science
, vol.322
, pp. 1110-1112
-
-
Zehr, J.1
Bench, S.2
Carter, B.3
Hewson, I.4
Niazi, F.5
Shi, T.6
Tripp, H.7
Affourtit, J.8
|