-
1
-
-
84888283551
-
PubMed
-
PubMed. , http://www.ncbi.nlm.nih.gov/pubmed
-
-
-
-
2
-
-
17244380380
-
A survey of current work in biomedical text mining
-
10.1093/bib/6.1.57, 15826357
-
Cohen A, Hersh W. A survey of current work in biomedical text mining. Briefings in Bioinformatics 2005, 6:57-71. 10.1093/bib/6.1.57, 15826357.
-
(2005)
Briefings in Bioinformatics
, vol.6
, pp. 57-71
-
-
Cohen, A.1
Hersh, W.2
-
3
-
-
33344468683
-
-
Norwood, MA, USA: Artech House, Inc
-
Ananiadou S, Mcnaught J. Text Mining for Biology And Biomedicine 2005, Norwood, MA, USA: Artech House, Inc.
-
(2005)
Text Mining for Biology And Biomedicine
-
-
Ananiadou, S.1
Mcnaught, J.2
-
4
-
-
33344465511
-
Biomedical Language Processing: What's Beyond PubMed?
-
10.1016/j.molcel.2006.02.012, 1702322, 16507357
-
Hunter L, Cohen KB. Biomedical Language Processing: What's Beyond PubMed?. Mol Cell 2006, 21(5):589-594. 10.1016/j.molcel.2006.02.012, 1702322, 16507357.
-
(2006)
Mol Cell
, vol.21
, Issue.5
, pp. 589-594
-
-
Hunter, L.1
Cohen, K.B.2
-
5
-
-
33751111173
-
Text mining and its potential applications in systems biology
-
10.1016/j.tibtech.2006.10.002, 17045684
-
Ananiadou S, Kell D, Tsujii J. Text mining and its potential applications in systems biology. Trends in Biotechnology 2006, 24(12):571-579. 10.1016/j.tibtech.2006.10.002, 17045684.
-
(2006)
Trends in Biotechnology
, vol.24
, Issue.12
, pp. 571-579
-
-
Ananiadou, S.1
Kell, D.2
Tsujii, J.3
-
6
-
-
70349445262
-
Current issues in biomedical text mining and natural language processing
-
Chapman W, Cohen KB. Current issues in biomedical text mining and natural language processing. Journal of Biomedical Informatics 2009, 5(42):757-759.
-
(2009)
Journal of Biomedical Informatics
, vol.5
, Issue.42
, pp. 757-759
-
-
Chapman, W.1
Cohen, K.B.2
-
7
-
-
36348990139
-
Frontiers of biomedical text mining: current progress
-
10.1093/bib/bbm045, 2516302, 17977867
-
Zweigenbaum P, Demner-Fushman D, Yu H, Cohen KB. Frontiers of biomedical text mining: current progress. Brief Bioinform 2007, 8(5):358-375. 10.1093/bib/bbm045, 2516302, 17977867.
-
(2007)
Brief Bioinform
, vol.8
, Issue.5
, pp. 358-375
-
-
Zweigenbaum, P.1
Demner-Fushman, D.2
Yu, H.3
Cohen, K.B.4
-
8
-
-
42549103568
-
Natural Language Processing in aid of FlyBase curators
-
10.1186/1471-2105-9-193, 2375127, 18410678
-
Karamanis N, Seal R, Lewin I, Mcquilton P, Vlachos A, Gasperin C, Drysdale R, Briscoe T. Natural Language Processing in aid of FlyBase curators. BMC Bioinformatics 2008, 9:193. 10.1186/1471-2105-9-193, 2375127, 18410678.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 193
-
-
Karamanis, N.1
Seal, R.2
Lewin, I.3
Mcquilton, P.4
Vlachos, A.5
Gasperin, C.6
Drysdale, R.7
Briscoe, T.8
-
9
-
-
33750517043
-
LitMiner: integration of library services within a bio-informatics application
-
10.1186/1742-5581-3-11, 1626482, 17052341
-
Demaine J, Martin J, Wei L, de Bruijn B. LitMiner: integration of library services within a bio-informatics application. Biomedical Digital Libraries 2006, 3:11. 10.1186/1742-5581-3-11, 1626482, 17052341.
-
(2006)
Biomedical Digital Libraries
, vol.3
, pp. 11
-
-
Demaine, J.1
Martin, J.2
Wei, L.3
de Bruijn, B.4
-
10
-
-
84908088795
-
Integrating text mining into the MGI biocuration workflow
-
10.1093/database/bap019, 2797454, 20157492
-
Dowell KG, McAndrews-Hill MS, Hill D, Drabkin H, Blake J. Integrating text mining into the MGI biocuration workflow. Database 2009, 2009:bap019. 10.1093/database/bap019, 2797454, 20157492.
-
(2009)
Database
, vol.2009
-
-
Dowell, K.G.1
McAndrews-Hill, M.S.2
Hill, D.3
Drabkin, H.4
Blake, J.5
-
11
-
-
31144458029
-
Extraction of transcript diversity from scientific literature
-
10.1371/journal.pcbi.0010010, 1183516, 16103899
-
Shah P, Jensen L, Boue S, Bork P. Extraction of transcript diversity from scientific literature. PLoS Comput Biol 2005, 1:e10. 10.1371/journal.pcbi.0010010, 1183516, 16103899.
-
(2005)
PLoS Comput Biol
, vol.1
-
-
Shah, P.1
Jensen, L.2
Boue, S.3
Bork, P.4
-
12
-
-
1542400018
-
Automated extraction of mutation data from the literature: application of MuteXt to G protein-coupled receptors and nuclear hormone receptors
-
10.1093/bioinformatics/btg449, 14990452
-
Horn F, Lau AL, Cohen FE. Automated extraction of mutation data from the literature: application of MuteXt to G protein-coupled receptors and nuclear hormone receptors. Bioinformatics 2004, 20(4):557-568. 10.1093/bioinformatics/btg449, 14990452.
-
(2004)
Bioinformatics
, vol.20
, Issue.4
, pp. 557-568
-
-
Horn, F.1
Lau, A.L.2
Cohen, F.E.3
-
14
-
-
14044254746
-
Textpresso: An Ontology-Based Information Retrieval and Extraction System for Biological Literature
-
517822, 15383839
-
Müller HM, Kenny EE, Sternberg PW. Textpresso: An Ontology-Based Information Retrieval and Extraction System for Biological Literature. PLoS Biol 2004, 2(11):e309. 517822, 15383839.
-
(2004)
PLoS Biol
, vol.2
, Issue.11
-
-
Müller, H.M.1
Kenny, E.E.2
Sternberg, P.W.3
-
15
-
-
84873055091
-
Translating Biology:text mining tools that work
-
2934913, 20827444
-
Cohen KB, Yu H, Bourne PE, Hirschman L. Translating Biology:text mining tools that work. Pacific Symposium on Biocomputing 2008, 551-555. 2934913, 20827444.
-
(2008)
Pacific Symposium on Biocomputing
, pp. 551-555
-
-
Cohen, K.B.1
Yu, H.2
Bourne, P.E.3
Hirschman, L.4
-
16
-
-
0040078056
-
Summarizing scientific articles: Experiments with relevance and rhetorical status
-
Teufel S, Moens M. Summarizing scientific articles: Experiments with relevance and rhetorical status. Computational Linguistics 2002, 28:409-445.
-
(2002)
Computational Linguistics
, vol.28
, pp. 409-445
-
-
Teufel, S.1
Moens, M.2
-
17
-
-
33646151379
-
Using argumentation to retrieve articles with similar citations
-
10.1016/j.ijmedinf.2005.06.007, 16165395
-
Tbahriti I, Chichester C, Lisacek F, Ruch P. Using argumentation to retrieve articles with similar citations. Int J Med Inform 2006, 75(6):488-495. 10.1016/j.ijmedinf.2005.06.007, 16165395.
-
(2006)
Int J Med Inform
, vol.75
, Issue.6
, pp. 488-495
-
-
Tbahriti, I.1
Chichester, C.2
Lisacek, F.3
Ruch, P.4
-
18
-
-
33846894118
-
Using argumentation to extract key sentences from biomedical abstracts
-
10.1016/j.ijmedinf.2006.05.002, 16815739
-
Ruch P, Boyer C, Chichester C, Tbahriti I, Geissbuhler A, Fabry P, Gobeill J, Pillet V, Rebholz-Schuhmann D, Lovis C, Veuthey AL. Using argumentation to extract key sentences from biomedical abstracts. Int J Med Inform 2007, 76(2-3):195-200. 10.1016/j.ijmedinf.2006.05.002, 16815739.
-
(2007)
Int J Med Inform
, vol.76
, Issue.2-3
, pp. 195-200
-
-
Ruch, P.1
Boyer, C.2
Chichester, C.3
Tbahriti, I.4
Geissbuhler, A.5
Fabry, P.6
Gobeill, J.7
Pillet, V.8
Rebholz-Schuhmann, D.9
Lovis, C.10
Veuthey, A.L.11
-
19
-
-
33646141828
-
Zone Analysis in Biology Articles as a Basis for Information Extraction
-
Mizuta Y, Korhonen A, Mullen T, Collier N. Zone Analysis in Biology Articles as a Basis for Information Extraction. International Journal of Medical Informatics on Natural Language Processing in Biomedicine and Its Applications 2006, 75(6):468-487.
-
(2006)
International Journal of Medical Informatics on Natural Language Processing in Biomedicine and Its Applications
, vol.75
, Issue.6
, pp. 468-487
-
-
Mizuta, Y.1
Korhonen, A.2
Mullen, T.3
Collier, N.4
-
20
-
-
85021773694
-
Generative content models for structural analysis of medical abstracts
-
New York, USA
-
Lin J, Karakos D, Demner-Fushman D, Khudanpur S. Generative content models for structural analysis of medical abstracts. Proceedings of BioNLP-06 2006, 65-72. New York, USA.
-
(2006)
Proceedings of BioNLP-06
, pp. 65-72
-
-
Lin, J.1
Karakos, D.2
Demner-Fushman, D.3
Khudanpur, S.4
-
22
-
-
80053410932
-
Towards Domain-Independent Argumentative Zoning: Evidence from Chemistry and Computational Linguistics
-
Teufel S, Siddharthan A, Batchelor C. Towards Domain-Independent Argumentative Zoning: Evidence from Chemistry and Computational Linguistics. Proceedings of EMNLP 2009, 1493-1502.
-
(2009)
Proceedings of EMNLP
, pp. 1493-1502
-
-
Teufel, S.1
Siddharthan, A.2
Batchelor, C.3
-
23
-
-
51749123368
-
Multi-dimensional classification of biomedical text: Toward automated, practical provision of high-utility text to diverse users
-
10.1093/bioinformatics/btn381, 2530883, 18718948
-
Shatkay H, Pan F, Rzhetsky A, Wilbur WJ. Multi-dimensional classification of biomedical text: Toward automated, practical provision of high-utility text to diverse users. Bioinformatics 2008, 24(18):2086-2093. 10.1093/bioinformatics/btn381, 2530883, 18718948.
-
(2008)
Bioinformatics
, vol.24
, Issue.18
, pp. 2086-2093
-
-
Shatkay, H.1
Pan, F.2
Rzhetsky, A.3
Wilbur, W.J.4
-
24
-
-
70449109756
-
Using conditional random fields for result identification in biomedical abstracts
-
Lin RTK, Dai HJ, Bow YY, Chiu JLT, Tsai RTH. Using conditional random fields for result identification in biomedical abstracts. Integr Comput-Aided Eng 2009, 16(4):339-352.
-
(2009)
Integr Comput-Aided Eng
, vol.16
, Issue.4
, pp. 339-352
-
-
Lin, R.T.K.1
Dai, H.J.2
Bow, Y.Y.3
Chiu, J.L.T.4
Tsai, R.T.H.5
-
25
-
-
85019581590
-
Corpora for the conceptualisation and zoning of scientific papers
-
Malta: European Language Resources Association (ELRA), Choukri NCC, Maegaard K, Mariani B, Odijk J, Piperidis J, Rosner S, Tapias M, Valletta D
-
Liakata M, Teufel S, Siddharthan A, Batchelor C. Corpora for the conceptualisation and zoning of scientific papers. Proceedings of the Seventh conference on International Language Resources and Evaluation (LREC'10). Edited by Chair) 2010, Malta: European Language Resources Association (ELRA), Choukri NCC, Maegaard K, Mariani B, Odijk J, Piperidis J, Rosner S, Tapias M, Valletta D.
-
(2010)
Proceedings of the Seventh conference on International Language Resources and Evaluation (LREC'10). Edited by Chair)
-
-
Liakata, M.1
Teufel, S.2
Siddharthan, A.3
Batchelor, C.4
-
26
-
-
60749127748
-
A baseline feature set for learning rhetorical zones using full articles in the biomedical domain
-
Mullen T, Mizuta Y, Collier N. A baseline feature set for learning rhetorical zones using full articles in the biomedical domain. Natural language processing and text mining 2005, 7:52-58.
-
(2005)
Natural language processing and text mining
, vol.7
, pp. 52-58
-
-
Mullen, T.1
Mizuta, Y.2
Collier, N.3
-
27
-
-
0343984156
-
Medical Literature Analysis and Retrieval System Online
-
Medical Literature Analysis and Retrieval System Online. , http://www.nlm.nih.gov/databases/databases_medline.html
-
-
-
-
28
-
-
30344443429
-
-
U.S. Environmental Protection Agency(EPA)
-
U.S. Environmental Protection Agency(EPA) Guidelines for carcinogen risk assessment 2005, U.S. Environmental Protection Agency(EPA)., http://www.epa.gov/cancerguidelines/
-
(2005)
Guidelines for carcinogen risk assessment
-
-
-
29
-
-
70449366673
-
The First Step in the Development of Text Mining Technology for Cancer Risk Assessment: Identifying and Organizing Scientific Evidence in Risk Assessment Literature
-
10.1186/1471-2105-10-303, 2759963, 19772619
-
Korhonen A, Sun L, Silins I, Stenius U. The First Step in the Development of Text Mining Technology for Cancer Risk Assessment: Identifying and Organizing Scientific Evidence in Risk Assessment Literature. BMC Bioinformatics 2009, 10:303. 10.1186/1471-2105-10-303, 2759963, 19772619.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 303
-
-
Korhonen, A.1
Sun, L.2
Silins, I.3
Stenius, U.4
-
30
-
-
63449142390
-
Is Searching Full Text More Effective Than Searching Abstracts?
-
10.1186/1471-2105-10-46, 2695361, 19192280
-
Lin J. Is Searching Full Text More Effective Than Searching Abstracts?. BMC Bioinformatics 2009, 10:46. 10.1186/1471-2105-10-46, 2695361, 19192280.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 46
-
-
Lin, J.1
-
31
-
-
85063155473
-
Semantic Annotation of Papers: Interface & Enrichment Tool (SAPIENT)
-
Boulder, Colorado
-
Liakata M, Q C, Soldatova L. Semantic Annotation of Papers: Interface & Enrichment Tool (SAPIENT). Proceedings of BioNLP-09 2009, 193-200. Boulder, Colorado.
-
(2009)
Proceedings of BioNLP-09
, pp. 193-200
-
-
Liakata, M.1
Q, C.2
Soldatova, L.3
-
34
-
-
33745308460
-
A Framework of Checking Subsumption Relations Between Composite Concepts in Different Ontologies
-
Kang D, Lu J, Xu B, Wang P, Li Y. A Framework of Checking Subsumption Relations Between Composite Concepts in Different Ontologies. Lecture Notes in Computer Science: Knowledge-Based Intelligent Information and Engineering Systems, Springer Verlag 2005, 3681:953-959.
-
(2005)
Lecture Notes in Computer Science: Knowledge-Based Intelligent Information and Engineering Systems, Springer Verlag
, vol.3681
, pp. 953-959
-
-
Kang, D.1
Lu, J.2
Xu, B.3
Wang, P.4
Li, Y.5
-
38
-
-
84888277661
-
Data mining: practical machine learning tools and techniques with Java Implementations
-
Data mining: practical machine learning tools and techniques with Java Implementations. , http://www.cs.waikato.ac.nz/ml/weka/
-
-
-
-
39
-
-
84874468006
-
CRF++: Yet Another CRF toolkit
-
CRF++: Yet Another CRF toolkit. , http://crfpp.sourceforge.net/
-
-
-
-
41
-
-
0001884644
-
Individual comparisons by ranking methods
-
Wilcoxon F. Individual comparisons by ranking methods. Biometrics Bulletin 1945, 1(6):80-83.
-
(1945)
Biometrics Bulletin
, vol.1
, Issue.6
, pp. 80-83
-
-
Wilcoxon, F.1
-
42
-
-
0002322469
-
On a test of whether one of two random variables is stochastically larger than the other
-
Mann HB, Whitney DR. On a test of whether one of two random variables is stochastically larger than the other. Annals of Mathematical Statistics 1947, 18:50-60.
-
(1947)
Annals of Mathematical Statistics
, vol.18
, pp. 50-60
-
-
Mann, H.B.1
Whitney, D.R.2
-
43
-
-
0017360990
-
The measurement of observer agreement for categorical data
-
10.2307/2529310, 843571
-
Landis JR, Koch GG. The measurement of observer agreement for categorical data. Biometrics 1977, 33:159-174. 10.2307/2529310, 843571.
-
(1977)
Biometrics
, vol.33
, pp. 159-174
-
-
Landis, J.R.1
Koch, G.G.2
|