-
1
-
-
17244380380
-
A survey of current work in biomedical text mining
-
10.1093/bib/6.1.57, 15826357
-
Cohen A, Hersh W. A survey of current work in biomedical text mining. Briefings in Bioinformatics 2005, 6:57-71. 10.1093/bib/6.1.57, 15826357.
-
(2005)
Briefings in Bioinformatics
, vol.6
, pp. 57-71
-
-
Cohen, A.1
Hersh, W.2
-
2
-
-
33344468683
-
-
Norwood, MA, USA: Artech House, Inc
-
Ananiadou S, McNaught J. Text Mining for Biology And Biomedicine 2005, Norwood, MA, USA: Artech House, Inc.
-
(2005)
Text Mining for Biology And Biomedicine
-
-
Ananiadou, S.1
McNaught, J.2
-
3
-
-
33344465511
-
Biomedical Language Processing: What's Beyond PubMed?
-
10.1016/j.molcel.2006.02.012, 1702322, 16507357
-
Hunter L, Cohen KB. Biomedical Language Processing: What's Beyond PubMed?. Mol Cell 2006, 21(5):589-594. 10.1016/j.molcel.2006.02.012, 1702322, 16507357.
-
(2006)
Mol Cell
, vol.21
, Issue.5
, pp. 589-594
-
-
Hunter, L.1
Cohen, K.B.2
-
4
-
-
33751111173
-
Text mining and its potential applications in systems biology
-
10.1016/j.tibtech.2006.10.002, 17045684
-
Ananiadou S, Kell D, Tsujii J. Text mining and its potential applications in systems biology. Trends in Biotechnology 2006, 24(12):571-579. 10.1016/j.tibtech.2006.10.002, 17045684.
-
(2006)
Trends in Biotechnology
, vol.24
, Issue.12
, pp. 571-579
-
-
Ananiadou, S.1
Kell, D.2
Tsujii, J.3
-
5
-
-
36348990139
-
Frontiers of biomedical text mining: current progress
-
10.1093/bib/bbm045, 2516302, 17977867
-
Zweigenbaum P, Demner-Fushman D, Yu H, Cohen KB. Frontiers of biomedical text mining: current progress. Brief Bioinform 2007, 8(5):358-375. 10.1093/bib/bbm045, 2516302, 17977867.
-
(2007)
Brief Bioinform
, vol.8
, Issue.5
, pp. 358-375
-
-
Zweigenbaum, P.1
Demner-Fushman, D.2
Yu, H.3
Cohen, K.B.4
-
6
-
-
33748373597
-
New directions in biomedical text annotation: definitions, guidelines and corpus construction
-
10.1186/1471-2105-7-356, 1559725, 16867190
-
Wilbur WJ, Rzhetsky A, Shatkay H. New directions in biomedical text annotation: definitions, guidelines and corpus construction. BMC Bioinformatics 2006, 7:356. 10.1186/1471-2105-7-356, 1559725, 16867190.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 356
-
-
Wilbur, W.J.1
Rzhetsky, A.2
Shatkay, H.3
-
7
-
-
51749123368
-
Multi-dimensional classification of biomedical text: Toward automated, practical provision of high-utility text to diverse users
-
10.1093/bioinformatics/btn381, 2530883, 18718948
-
Shatkay H, Pan F, Rzhetsky A, Wilbur WJ. Multi-dimensional classification of biomedical text: Toward automated, practical provision of high-utility text to diverse users. Bioinformatics 2008, 24(18):2086-2093. 10.1093/bioinformatics/btn381, 2530883, 18718948.
-
(2008)
Bioinformatics
, vol.24
, Issue.18
, pp. 2086-2093
-
-
Shatkay, H.1
Pan, F.2
Rzhetsky, A.3
Wilbur, W.J.4
-
8
-
-
42549103568
-
Natural Language Processing in aid of FlyBase curators
-
10.1186/1471-2105-9-193, 2375127, 18410678
-
Karamanis N, Seal R, Lewin I, McQuilton P, Vlachos A, Gasperin C, Drysdale R, Briscoe E. Natural Language Processing in aid of FlyBase curators. BMC Bioinformatics 2008, 9:193. 10.1186/1471-2105-9-193, 2375127, 18410678.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 193
-
-
Karamanis, N.1
Seal, R.2
Lewin, I.3
McQuilton, P.4
Vlachos, A.5
Gasperin, C.6
Drysdale, R.7
Briscoe, E.8
-
9
-
-
33750517043
-
LitMiner: integration of library services within a bio-informatics application
-
10.1186/1742-5581-3-11, 1626482, 17052341
-
Demaine J, Martin J, Wei L, de Bruijn B. LitMiner: integration of library services within a bio-informatics application. Biomedical Digital Libraries 2006, 3:11. 10.1186/1742-5581-3-11, 1626482, 17052341.
-
(2006)
Biomedical Digital Libraries
, vol.3
, pp. 11
-
-
Demaine, J.1
Martin, J.2
Wei, L.3
de Bruijn, B.4
-
10
-
-
31144458029
-
Extraction of transcript diversity from scientific literature
-
10.1371/journal.pcbi.0010010, 1183516, 16103899
-
Shah P, Jensen L, Boue S, Bork P. Extraction of transcript diversity from scientific literature. PLoS Comput Biol 2005, 1:e10. 10.1371/journal.pcbi.0010010, 1183516, 16103899.
-
(2005)
PLoS Comput Biol
, vol.1
-
-
Shah, P.1
Jensen, L.2
Boue, S.3
Bork, P.4
-
11
-
-
1542400018
-
Automated extraction of mutation data from the literature: application of MuteXt to G protein-coupled receptors and nuclear hormone receptors
-
10.1093/bioinformatics/btg449, 14990452
-
Horn F, Lau AL, Cohen FE. Automated extraction of mutation data from the literature: application of MuteXt to G protein-coupled receptors and nuclear hormone receptors. Bioinformatics 2004, 20(4):557-568. 10.1093/bioinformatics/btg449, 14990452.
-
(2004)
Bioinformatics
, vol.20
, Issue.4
, pp. 557-568
-
-
Horn, F.1
Lau, A.L.2
Cohen, F.E.3
-
13
-
-
14044254746
-
Textpresso: An Ontology-Based Information Retrieval and Extraction System for Biological Literature
-
10.1371/journal.pbio.0020309, 517822, 15383839
-
Muller HM, Kenny EE, Sternberg PW. Textpresso: An Ontology-Based Information Retrieval and Extraction System for Biological Literature. PLoS Biol 2004, 2(11):e309. 10.1371/journal.pbio.0020309, 517822, 15383839.
-
(2004)
PLoS Biol
, vol.2
, Issue.11
-
-
Muller, H.M.1
Kenny, E.E.2
Sternberg, P.W.3
-
15
-
-
84902101030
-
A New Challenge for Text Mining: Cancer Risk Assessment
-
Lewin I, Silins I, Korhonen A, Hogberg J, Stenius U. A New Challenge for Text Mining: Cancer Risk Assessment. Proceedings of the ISMB BioLINK Special Interest Group on Text Data Mining 2008,
-
(2008)
Proceedings of the ISMB BioLINK Special Interest Group on Text Data Mining
-
-
Lewin, I.1
Silins, I.2
Korhonen, A.3
Hogberg, J.4
Stenius, U.5
-
18
-
-
84888294337
-
European Community Registration, Evaluation, Authorisation and Restriction of Chemical substances (REACH) legislation
-
European Community Registration, Evaluation, Authorisation and Restriction of Chemical substances (REACH) legislation. , http://ec.europa.eu/environment/chemicals/reach/pdf/2007_02_reach_in_bri ef.pdf
-
-
-
-
19
-
-
0343984156
-
Medical Literature Analysis and Retrieval System Online
-
Medical Literature Analysis and Retrieval System Online. , http://www.nlm.nih.gov/databases/databases_medline.html
-
-
-
-
22
-
-
0034852235
-
The Use and Evaluation of Primary Data in 29 Trichloroethylene Carcinogen Risk Assessments
-
Rudén C. The Use and Evaluation of Primary Data in 29 Trichloroethylene Carcinogen Risk Assessments. Regulatory Toxicology and Pharmacology 2001, 34:3-16.
-
(2001)
Regulatory Toxicology and Pharmacology
, vol.34
, pp. 3-16
-
-
Rudén, C.1
-
23
-
-
33751164224
-
What influences a health risk assessment?
-
Rudén C. What influences a health risk assessment?. Toxicology Letters 2006, 167(3):201-204.
-
(2006)
Toxicology Letters
, vol.167
, Issue.3
, pp. 201-204
-
-
Rudén, C.1
-
24
-
-
85116904637
-
Corpus Design For Biomedical Natural Language Processing
-
Cohen KB, Fox L, Ogren PV, Hunter L. Corpus Design For Biomedical Natural Language Processing. Proceedings of the ACL-ISMB Workshop on Linking Biological Literature, Ontologies and Databases 2005, 38-45.
-
(2005)
Proceedings of the ACL-ISMB Workshop on Linking Biological Literature, Ontologies and Databases
, pp. 38-45
-
-
Cohen, K.B.1
Fox, L.2
Ogren, P.V.3
Hunter, L.4
-
25
-
-
84888299373
-
PubMed
-
PubMed. , http://www.ncbi.nlm.nih.gov/pubmed
-
-
-
-
26
-
-
0004111689
-
Integrated Risk Information System
-
Integrated Risk Information System. , http://cfpub.epa.gov/ncea/iris/index.cfm
-
-
-
-
27
-
-
77953987938
-
Toxnet Toxicology Data Network
-
Toxnet Toxicology Data Network. , http://toxnet.nlm.nih.gov/
-
-
-
-
28
-
-
84874661444
-
The Global Portal to Information on Chemical Substances
-
The Global Portal to Information on Chemical Substances. , http://webnet3.oecd.org/echemportal/
-
-
-
-
29
-
-
84948481845
-
An algorithm for suffix stripping
-
Porter MF. An algorithm for suffix stripping. Program 1980, 14(3):130-137.
-
(1980)
Program
, vol.14
, Issue.3
, pp. 130-137
-
-
Porter, M.F.1
-
31
-
-
44649148478
-
Exploiting and integrating rich features for biological literature classification
-
Wang H, Huang M, Ding S, Zhu X. Exploiting and integrating rich features for biological literature classification. BMC Bioinformatics 2008, 9(Suppl 3).
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.SUPPL 3
-
-
Wang, H.1
Huang, M.2
Ding, S.3
Zhu, X.4
-
32
-
-
33748635165
-
Substring selection for biomedical document classification
-
Han B, Obradovic Z, Hu ZZ, Wu CH, Vucetic S. Substring selection for biomedical document classification. Bioinformatics 2006, 22(17):2136-2142.
-
(2006)
Bioinformatics
, vol.22
, Issue.17
, pp. 2136-2142
-
-
Han, B.1
Obradovic, Z.2
Hu, Z.Z.3
Wu, C.H.4
Vucetic, S.5
-
34
-
-
34047138318
-
Combining SVMs with Various Feature Selection Strategies
-
Berlin/Heidelberg: Springer, Guyon I, Gunn S, Nikravesh M, Zadeh L
-
Chen YW, Lin CJ. Combining SVMs with Various Feature Selection Strategies. Feature extraction, foundations and applications 2006, 315-324. Berlin/Heidelberg: Springer, Guyon I, Gunn S, Nikravesh M, Zadeh L.
-
(2006)
Feature extraction, foundations and applications
, pp. 315-324
-
-
Chen, Y.W.1
Lin, C.J.2
-
35
-
-
1942484786
-
Tackling the Poor Assumptions of Naive Bayes Text Classifiers
-
Rennie JDM, Karger D. Tackling the Poor Assumptions of Naive Bayes Text Classifiers. Proceedings of the Twentieth International Conference on Machine Learning, Washington, DC, USA 2003,
-
(2003)
Proceedings of the Twentieth International Conference on Machine Learning, Washington, DC, USA
-
-
Rennie, J.D.M.1
Karger, D.2
-
38
-
-
85024373635
-
A re-examination of text categorization methods
-
Yang Y, Liu X. A re-examination of text categorization methods. Proceedings of the 22nd SIGIR, New York, NY, USA 1999,
-
(1999)
Proceedings of the 22nd SIGIR, New York, NY, USA
-
-
Yang, Y.1
Liu, X.2
-
39
-
-
4944228528
-
A practical guide to support vector classification
-
National Taiwan University, Taipei
-
Hsu CW, Chang CC, Lin CJ. A practical guide to support vector classification. Tech. rep 2003, National Taiwan University, Taipei.
-
(2003)
Tech. rep
-
-
Hsu, C.W.1
Chang, C.C.2
Lin, C.J.3
-
40
-
-
50949133669
-
LIBLINEAR: A Library for Large Linear Classification
-
Fan RE, Chang KW, Hsieh CJ, Wang XR, Lin CJ. LIBLINEAR: A Library for Large Linear Classification. Journal of Machine Learning Research 2008, 9:1871-1874.
-
(2008)
Journal of Machine Learning Research
, vol.9
, pp. 1871-1874
-
-
Fan, R.E.1
Chang, K.W.2
Hsieh, C.J.3
Wang, X.R.4
Lin, C.J.5
-
42
-
-
57349126313
-
Inter-coder agreement for computational linguistics
-
Artstein R, Poesio M. Inter-coder agreement for computational linguistics. Computational Linguistics 2008, 34(4):555-596.
-
(2008)
Computational Linguistics
, vol.34
, Issue.4
, pp. 555-596
-
-
Artstein, R.1
Poesio, M.2
-
45
-
-
0017360990
-
The measurement of observer agreement for categorical data
-
Landis JR, Koch GG. The measurement of observer agreement for categorical data. Biometrics 1977, 33:159-174., http://view.ncbi.nlm.nih.gov/pubmed/843571
-
(1977)
Biometrics
, vol.33
, pp. 159-174
-
-
Landis, J.R.1
Koch, G.G.2
-
46
-
-
40749087717
-
Corpus annotation for mining biomedical events from literature
-
Kim JD, Ohta T, Tsujii J. Corpus annotation for mining biomedical events from literature. BMC Bioinformatics 2008, 9(10):1471-2105.
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.10
, pp. 1471-2105
-
-
Kim, J.D.1
Ohta, T.2
Tsujii, J.3
-
47
-
-
36749097784
-
Automated acquisition of disease drug knowledge from biomedical and clinical documents: an initial study
-
Chen ES, George H, Hua X, Marianthi M, Friedman C. Automated acquisition of disease drug knowledge from biomedical and clinical documents: an initial study. Journal of the American Medical Informatics Association 2008, 1(15):87-98.
-
(2008)
Journal of the American Medical Informatics Association
, vol.1
, Issue.15
, pp. 87-98
-
-
Chen, E.S.1
George, H.2
Hua, X.3
Marianthi, M.4
Friedman, C.5
-
48
-
-
73949148054
-
Comparing ICD9-Encoded Diagnoses and NLP-Processed Discharge Summaries for Clinical Trials Pre-Screening: A Case Study
-
Li L, Chase HS, Patel CO, Friedman C, Weng C. Comparing ICD9-Encoded Diagnoses and NLP-Processed Discharge Summaries for Clinical Trials Pre-Screening: A Case Study. AMIA Annual Symposium, Washington, DC, USA 2008,
-
(2008)
AMIA Annual Symposium, Washington, DC, USA
-
-
Li, L.1
Chase, H.S.2
Patel, C.O.3
Friedman, C.4
Weng, C.5
-
49
-
-
73949085793
-
Automated knowledge acquisition from clinical reports
-
Wang X, Chused A, Elhadad N, Friedman C, Markatou M. Automated knowledge acquisition from clinical reports. AMIA Annual Symposium 2008,
-
(2008)
AMIA Annual Symposium
-
-
Wang, X.1
Chused, A.2
Elhadad, N.3
Friedman, C.4
Markatou, M.5
-
50
-
-
38549099685
-
PubMeth: a cancer methylation database combining text-mining and expert annotation
-
2238841, 17932060
-
Ongenaert M, Van Neste L, De Meyer T, Menschaert G, Bekaert S, Van Criekinge W. PubMeth: a cancer methylation database combining text-mining and expert annotation. Nucleic Acids Research 2008, 36:D842-846. 2238841, 17932060.
-
(2008)
Nucleic Acids Research
, vol.36
-
-
Ongenaert, M.1
Van Neste, L.2
De Meyer, T.3
Menschaert, G.4
Bekaert, S.5
Van Criekinge, W.6
-
51
-
-
33748192576
-
Text mining of full-text journal articles combined with gene expression analysis reveals a relationship between sphingosine-1-phosphate and invasiveness of a glioblastoma cell line
-
1557675, 16901352
-
Natarajan J, Berrar D, Dubitzky W, Hack C, Zhang Y, DeSesa C, Van Brocklyn J, Bremer E. Text mining of full-text journal articles combined with gene expression analysis reveals a relationship between sphingosine-1-phosphate and invasiveness of a glioblastoma cell line. BMC Bioinformatics 2006, 7:373. 1557675, 16901352.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 373
-
-
Natarajan, J.1
Berrar, D.2
Dubitzky, W.3
Hack, C.4
Zhang, Y.5
DeSesa, C.6
Van Brocklyn, J.7
Bremer, E.8
-
52
-
-
39049113052
-
A Platform of Biomedical Literature Mining for Categorization of Cancer Related Abstracts
-
Washington, DC, USA: IEEE Computer Society
-
Lee CH, Chiu HC, Yang HC. A Platform of Biomedical Literature Mining for Categorization of Cancer Related Abstracts. ICICIC '07: Proceedings of the Second International Conference on Innovative Computing, Informatio and Control 2007, Washington, DC, USA: IEEE Computer Society.
-
(2007)
ICICIC '07: Proceedings of the Second International Conference on Innovative Computing, Informatio and Control
-
-
Lee, C.H.1
Chiu, H.C.2
Yang, H.C.3
-
53
-
-
39049136537
-
Text Mining of Clinical Records for Cancer Diagnosis
-
Washington, DC, USA: IEEE Computer Society
-
Lee CH, Chiu HC, Yang HC. Text Mining of Clinical Records for Cancer Diagnosis. ICICIC '07: Proceedings of the Second International Conference on Innovative Computing, Informatio and Control 2007, Washington, DC, USA: IEEE Computer Society.
-
(2007)
ICICIC '07: Proceedings of the Second International Conference on Innovative Computing, Informatio and Control
-
-
Lee, C.H.1
Chiu, H.C.2
Yang, H.C.3
-
54
-
-
84870652327
-
Medical Subject Headings
-
Medical Subject Headings. , http://www.nlm.nih.gov/mesh/
-
-
-
-
56
-
-
84888306690
-
EFetch Entrez Utility
-
NCBI EFetch Entrez Utility. 2005, , http://www.ncbi.nlm.nih.gov/entrez/query/static/efetch_help.html
-
(2005)
-
-
-
57
-
-
70449418412
-
Learning Taxonomies by Dependence Maximization
-
Cambridge, MA, USA: MIT Press, Koller D, Schuurmans D, Bengio Y, Bottou L
-
Blaschko MB, Gretton A. Learning Taxonomies by Dependence Maximization. Twenty-Second Annual Conference on Neural Information Processing Systems 2009, 153-160. Cambridge, MA, USA: MIT Press, Koller D, Schuurmans D, Bengio Y, Bottou L.
-
(2009)
Twenty-Second Annual Conference on Neural Information Processing Systems
, pp. 153-160
-
-
Blaschko, M.B.1
Gretton, A.2
-
58
-
-
33646502601
-
Developing a Robust Part-of-Speech Tagger for Biomedical Text
-
Springer, Bozanis P, Houstis EN
-
Tsuruoka Y, Tateishi Y, Kim JD, Ohta T, McNaught J, Ananiadou S, Tsujii J. Developing a Robust Part-of-Speech Tagger for Biomedical Text. Panhellenic Conference on Informatics, of Lecture Notes in Computer Science 2005, 3746:382-392. Springer, Bozanis P, Houstis EN.
-
(2005)
Panhellenic Conference on Informatics, of Lecture Notes in Computer Science
, vol.3746
, pp. 382-392
-
-
Tsuruoka, Y.1
Tateishi, Y.2
Kim, J.D.3
Ohta, T.4
McNaught, J.5
Ananiadou, S.6
Tsujii, J.7
-
60
-
-
84874285402
-
BioLexicon: A Lexical Resource for the Biology Domain
-
Yutaka S, Montemagni S, Pezik P, Schuhmann DR, McNaught J, Ananiadou S. BioLexicon: A Lexical Resource for the Biology Domain. Proceedings of the Third International Symposium on Semantic Mining in Biomedicine (SMBM 2008), Turku, Finland 2008,
-
(2008)
Proceedings of the Third International Symposium on Semantic Mining in Biomedicine (SMBM 2008), Turku, Finland
-
-
Yutaka, S.1
Montemagni, S.2
Pezik, P.3
Schuhmann, D.R.4
McNaught, J.5
Ananiadou, S.6
|