Genomic constitution of Festuca × Lolium hybrids revealed by the DArTFest array

Theoretical and Applied Genetics

Volumn 122, Issue 2, 2011, Pages 355-363

  Kopecký, David ^a   Bartoš, Jan ^a   Christelová, Pavla ^a   Černoch, Vladimír ^b   Kilian, Andrzej ^c   Doležel, Jaroslav ^a  

^a INSTITUTE OF EXPERIMENTAL BOTANY   (Czech Republic)

^b Šlechtitelská Stanice Hladké Životice ^*  (Czech Republic)

^c Diversity Arrays Technology P/L   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL SIGNIFICANCE; CORE SET; DNA MARKERS; GENETIC STRUCTURE; GENOMIC CONSTITUTION; GENOMIC LOCUS; LIMITED RESOLUTION; LOW FREQUENCY; MOLECULAR CYTOGENETIC ANALYSIS;

GENES;

ANIMALIA; FESTUCA; FESTULOLIUM; LOLIUM; POACEAE;

PLANT DNA;

ARTICLE; CHIMERA; CHROMOSOME MAP; CROP; DNA MICROARRAY; DNA SEQUENCE; FESCUE; GENETIC MARKER; GENETIC VARIABILITY; GENETICS; GENOTYPE; HYBRIDIZATION; LOLIUM; PLANT CHROMOSOME; PLANT GENOME;

CHIMERA; CHROMOSOMES, PLANT; CROPS, AGRICULTURAL; DNA, PLANT; FESTUCA; GENETIC MARKERS; GENETIC VARIATION; GENOME, PLANT; GENOTYPE; HYBRIDIZATION, GENETIC; LOLIUM; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PHYSICAL CHROMOSOME MAPPING; SEQUENCE ANALYSIS, DNA;

EID: 79952267334     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-010-1451-1     Document Type: Article

References (33)

1. Adams KL, Wendel JF (2005) Polyploidy and genome evolution in plants. Curr Opin Plant Biol 8:135-141
2. Alm V, Fang C, Busso CS, Devos KM, Vollan K, Grieg Z, Rognli OA (2003) A linkage map of meadow fescue (Festuca pratensis Huds.) and comparative mapping with other Poaceae species. Theor Appl Genet 108:25-40
3. Buckner RC, Burrus PB, Bush LP (1977) Registration of Kenhy tall fescue. Crop Sci 17:672-673
4. Cai X, Jones S (1997) Direct evidence for high level of autosyndetic pairing in hybrids of Thinopyrum intermedium and Th-ponticum with Triticum aestivum. Theor Appl Genet 95:568-572
5. Felsenstein J (1989) PHYLIP-phylogeny inference package (Version 3.2). Cladistics, pp 164-166
6. Felsenstein J (2004) PHYLIP (Phylogeny Inference Package) (3.6). University of Washington, Seattle
7. Fjellheim S, Rognli OA (2005) Genetic diversity within and among Nordic meadow fescue (Festuca pratensis Huds.) cultivars determined on the basis of AFLP markers. Crop Sci 45:2081-2086
8. Fjellheim S, Rognli OA, Fosnes K, Brochmann C (2006) Recent bottlenecking in the widespread meadow fescue (Festuca pratensis Huds.) inferred from chloroplast DNA sequences. J Biogeogr 33:1470-1478
9. Fojtik A (1994) Methods of grass improvement used at the Plant Breeding Station Hladké Životice. Genet Pol 35A:25-31
10. Guthridge KM, Dupal MP, Kolliker R, Jones ES, Smith KF, Forster JW (2001) AFLP analysis of genetic diversity within and between populations of perennial ryegrass (Lolium perenne L.). Euphytica 122:191-201
11. Inoue M, Gao ZS, Hirata M, Fujimori M, Cai HW (2004) Construction of a high-density linkage map of Italian ryegrass (Lolium multiflorum Lam.) using restriction fragment length polymorphism, amplified fragment length polymorphism, and telomeric repeat associated sequence markers. Genome 47:57-65
12. Iovene M, Barone A, Frusciante L, Monti L, Carputo D (2004) Selection for aneuploid potato hybrids combining a low wild genome content and resistance traits from Solanum commersonii. Theor Appl Genet 109:1139-1146
13. Jaccoud D, Peng K, Feinstein D, Kilian A (2001) Diversity Arrays: a solid state technology for sequence information independent genotyping. Nucleic Acids Res 29:e25
14. Jauhar PP (1993) Cytogenetics of the Festuca-Lolium complex. Relevance to breeding. Monographs on theoretical and applied genetics, vol 18. Springer, Berlin, p 255
15. Jones ES, Dupal MP, Dumsday JL, Hughes LJ, Forster JW (2002) An SSR-based genetic linkage map for perennial ryegrass (Lolium perenne L.). Theor Appl Genet 105:577-584
16. Kolliker R, Stadelmann FJ, Reidy B, Nosberger J (1999) Genetic variability of forage grass cultivars: a comparison of Festuca pratensis Huds., Lolium perenne L., and Dactylis glomerata L. Euphytica 106:261-270
17. Kopecký D, Lukaszewski AJ, Doležel J (2005) Genomic constitution of Festulolium cultivars released in the Czech Republic. Plant Breed 124:454-458
18. Kopecký D, Loureiro J, Zwierzykowski Z, Ghesquiere M, Dolezel J (2006) Genome constitution and evolution in Lolium 9 Festuca hybrid cultivars (Festulolium). Theor Appl Genet 113:731-742
19. Kopecký D, Bartoš J, Lukaszewski AJ, Baird JH, Černoch V, Kolliker R, Rognli OA, Blois H, Caig V, Lubberstedt T, Studer B, Shaw B, Doležel J, Kilian A (2009) Development and mapping of DArT markers within the Festuca-Lolium complex. BMC Genomics 10:473
20. Lewis EJ, Tyler BF, Chorlton KH (1973) Development of LoliumFestuca hybrids. Annual Report of the Welsh Plant Breeding Station for 1972, pp 34-37
21. Lukaszewski AJ, Lapinski B, Rybka K (2005) Limitations of in situ hybridization with total genomic DNA in routine screening for alien introgressions in wheat. Cytogenet Genome Res 109:373-377
22. Maccaferri M, Stefanelli S, Rotondo F, Tuberosa R, Sanguineti MC (2007) Relationships among durum wheat accessions. I. Comparative analysis of SSR, AFLP, and phenotypic data. Genome 50:373-384
23. Momotaz A, Forster JW, Yamada T (2004) Identification of cultivars and accessions of Lolium, Festuca and Festulolium hybrids through the detection of simple sequence repeat polymorphism. Plant Breed 123:370-376
24. Ouyang S, Buell CR (2004) The TIGR Plant Repeat Databases: a collective resource for the identification of repetitive sequences in plants. Nucleic Acids Res 32(Database issue):D360-D363
25. Pharmawati M, Yan G, Finnegan PM (2005) Molecular variation and fingerprinting of Leucadendron cultivars (Proteaceae) by ISSR markers. Ann Bot 95:1163-1170
26. Rognli OA, Saha MC, Bhamidimarri S, van der Heijden S (2010) Fescues. In: Boller B, Posselt UK, Veronesi F (eds) Fodder crops and amenity grasses. Springer, New York, Dordrecht, Heidelberg, London, pp 261-292
27. Rojas G, Mendez MA, Munoz C, Lemus G, Hinrichsen P (2008) Identification of a minimal microsatellite marker panel for the fingerprinting of peach and nectarine cultivars. Electron J Biotechnol 11(5):1
28. Saha MC, Mian R, Zwonitzer JC, Chekhovskiy K, Hopkins AA (2005) An SSR-and AFLP-based genetic linkage map of tall fescue (Festuca arundinacea Schreb.). Theor Appl Genet 110:323-336
29. Snowdon RJ, Kohler W, Friedt W, Kohler A (1997) Genomic in situ hybridization in Brassica amphidiploids and interspecific hybrids. Theor Appl Genet 95:1320-1324
30. Tamura K, Yonemaru J, Hisano H, Kanamori H, King J, King IP, Tase K, Sanada Y, Komatsu T, Yamada T (2009) Development of intron-flanking EST markers for the Lolium/Festuca complex using rice genomic information. Theor Appl Genet 118:1549-1560
31. Thomas HM, Morgan WG, Meredith MR, Humphreys MW, Thomas H, Leggett JM (1994) Identification of parental and recombined chromosomes in hybrid derivatives of Lolium multiflorum 9 Festuca pratensis by genomic in situ hybridization. Theor Appl Genet 88:909-913
32. Tu Y, Sun J, Ge X, Li Z (2009) Chromosome elimination, addition and introgression in intertribal partial hybrids between Brassica rapa and Isatis indigotica. Ann Bot 103:1039-1048
33. Wenzl P, Carling J, Kudrna D, Jaccoud D, Huttner E, Kleinhofs A, Kilian A (2004) Diversity Arrays Technology (DArT) for wholegenome profiling of barley. In: Proc Natl Acad Sci USA 101:9915-9920