The use of low-resolution phasing followed by phase extension from 7.6 to 2.5 Å resolution with noncrystallographic symmetry to solve the structure of a bacteriophage capsid protein

Acta Crystallographica Section D: Biological Crystallography

Volumn 67, Issue 3, 2011, Pages 228-232

  Abrescia, Nicola G A ^a,b,c   Grimes, Jonathan M ^b,d   Oksanen, Hanna M ^e   Bamford, Jaana K H ^f   Bamford, Dennis H ^e   Stuart, David I ^b,d  

^a INSTITUTO DE SALUD CARLOS III   (Spain)

^b UNIVERSITY OF OXFORD   (United Kingdom)

^c BASQUE FOUNDATION FOR SCIENCE   (Spain)

^d DIAMOND LIGHT SOURCE LTD   (United Kingdom)

^e UNIVERSITY OF HELSINKI   (Finland)

^f UNIVERSITY OF JYVÄSKYLÄ   (Finland)

Author keywords

data collection; noncrystallographic symmetry; phasing methods; virus structure

Indexed keywords

CAPSID PROTEIN;

ARTICLE; BACTERIOPHAGE; CHEMICAL STRUCTURE; CHEMISTRY; PROTEIN QUATERNARY STRUCTURE; PROTEIN TERTIARY STRUCTURE; X RAY CRYSTALLOGRAPHY;

BACTERIOPHAGES; CAPSID PROTEINS; CRYSTALLOGRAPHY, X-RAY; MODELS, MOLECULAR; PROTEIN STRUCTURE, QUATERNARY; PROTEIN STRUCTURE, TERTIARY;

MIRIDAE; PSEUDOALTEROMONAS PHAGE PM2;

EID: 79952267049     PISSN: 09074449     EISSN: 13990047     Source Type: Journal    
DOI: 10.1107/S0907444911002277     Document Type: Article

References (27)

1. Abrescia, N. G., Cockburn, J. J., Grimes, J. M., Sutton, G. C., Diprose, J. M., Butcher, S. J., Fuller, S. D., San Martín, C., Burnett, R. M., Stuart, D. I., Bamford, D. H. & Bamford, J. K. (2004). Nature (London), 432, 68-74.
2. Abrescia, N. G., Grimes, J. M., Fry, E. E., Ravantti, J. J., Bamford, D. H. & Stuart, D. I. (2010). Emerging Topics in Physical Virology, edited by P. Stockley & R. Twarock, pp. 35-58. London: Imperial College Press.
3. Abrescia, N. G., Grimes, J. M., Kivelä, H. M., Assenberg, R., Sutton, G. C., Butcher, S. J., Bamford, J. K., Bamford, D. H. & Stuart, D. I. (2008). Mol. Cell, 31, 749-761.
4. Abrescia, N. G. A., Kivelä, H. M., Grimes, J. M., Bamford, J. K. H., Bamford, D. H. & Stuart, D. I. (2005). Acta Cryst. F61, 762-765.
5. Bamford, D. H., Burnett, R. M. & Stuart, D. I. (2002). Theor. Popul. Biol. 61, 461-470.
6. Bamford, D. H., Grimes, J. M. & Stuart, D. I. (2005). Curr. Opin. Struct. Biol. 15, 655-663.
7. Benson, S. D., Bamford, J. K. H., Bamford, D. H. & Burnett, R. M. (2002). Acta Cryst. D58, 39-59.
8. Brünger, A. T. (1992). X-PLOR Version 3.1: A System for X-ray Crystallography and NMR. Yale University, Connecticut, USA.
9. Collaborative Computational Project, Number 4(1994). Acta Cryst. D50, 760-763.
10. Diprose, J. M. (2000). Structural Studies on Orbiviruses. DPhil thesis, University of Oxford.
11. Drenth, J. (1999). Principles of Protein X-ray Crystallography. Heidelberg: Springer-Verlag.
12. Emsley, P. & Cowtan, K. (2004). Acta Cryst. D60, 2126-2132.
13. Fry, E., Abrescia, N. G. & Stuart, D. I. (2007). Macromolecular Crystallography, edited by M. R. Sanderson & J. V. Skelly, pp. 245-263. Oxford University Press.
14. Hendrickson, W. A. (1991). Science, 254, 51-58.
15. Khayat, R., Tang, L., Larson, E. T., Lawrence, C. M., Young, M. & Johnson, J. E. (2005). Proc. Natl Acad. Sci. USA, 102, 18944-18949.
16. Kivelä, H. M., Abrescia, N. G., Bamford, J. K., Grimes, J. M., Stuart, D. I. & Bamford, D. H. (2007). J. Struct. Biol. 161, 204-210.
17. Kivelä, H. M., Kalkkinen, N. & Bamford, D. H. (2002). J. Virol. 76, 8169-8178.
18. Lee, K. K. & Johnson, J. E. (2003). Curr. Opin. Struct. Biol. 13, 558-569.
19. Otwinowski, Z. & Minor, W. (1997). Methods Enzymol. 276, 307-326.
20. Qian, B., Raman, S., Das, R., Bradley, P., McCoy, A. J., Read, R. J. & Baker, D. (2007). Nature (London), 450, 259-264.
21. Rossmann, M. G. (1995). Curr. Opin. Struct. Biol. 5, 650-655.
22. Rossmann, M. G. & Blow, D. M. (1962). Acta Cryst. 15, 24-31.
23. Roversi, P., Blanc, E., Vonrhein, C., Evans, G. & Bricogne, G. (2000). Acta Cryst. D56, 1316-1323.
24. Trapani, S., Abergel, C., Gutsche, I., Horcajada, C., Fita, I. & Navaza, J. (2006). Acta Cryst. D62, 467-475.
25. Trapani, S., Schoehn, G., Navaza, J. & Abergel, C. (2010). Acta Cryst. D66, 514-521.
26. Villeret, V., Tricot, C., Stalon, V. & Dideberg, O. (1995). Proc. Natl Acad. Sci. USA, 92, 10762-10766.
27. Walter, T. S. et al. (2005). Acta Cryst. D61, 651-657.