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Volumn 680, Issue , 2010, Pages 693-700

Standardizing the next generation of bioinformatics software development with BioHDF (HDF5)

Author keywords

Bioinformatics; Data management; DNA sequencing; HDF; highpeformance computing

Indexed keywords

RNA;

EID: 79952200805     PISSN: 00652598     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-4419-5913-3_77     Document Type: Conference Paper
Times cited : (14)

References (15)
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    • 33646256547 scopus 로고    scopus 로고
    • Beyond the data deluge: Data integration and bio-ontologies
    • Blake JA, Bult CJ (2006) Beyond the data deluge: Data integration and bio-ontologies. J Biomed Inform 39:314-20.
    • (2006) J Biomed Inform , vol.39 , pp. 314-320
    • Blake, J.A.1    Bult, C.J.2
  • 4
    • 84860189574 scopus 로고    scopus 로고
    • HDF - hierarchical data format. http://www.hdfgroup.org/.
  • 5
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead B, Trapnell C, Pop M, Salzberg SL (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10:R25.
    • (2009) Genome Biol , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 6
    • 84860115285 scopus 로고    scopus 로고
    • GFF3. http://www.sequenceontology.org/gff3.shtml.
    • GFF3
  • 7
    • 0035162594 scopus 로고    scopus 로고
    • RefSeq and LocusLink: NCBI gene-centered resources
    • Pruitt KD, Maglott DR (2001) RefSeq and LocusLink: NCBI gene-centered resources. Nucleic Acids Res 29:137-10.
    • (2001) Nucleic Acids Res , vol.29 , pp. 137-10
    • Pruitt, K.D.1    Maglott, D.R.2
  • 9
    • 33748486517 scopus 로고    scopus 로고
    • AceView: A comprehensive cDNA-supported gene and transcripts annotation
    • Thierry-Mieg D, Thierry-Mieg J (2006) AceView: A comprehensive cDNA-supported gene and transcripts annotation. Genome Biol 7 Suppl 1:S12.1-14.
    • (2006) Genome Biol , vol.7 , Issue.SUPPL. 1
    • Thierry-Mieg, D.1    Thierry-Mieg, J.2
  • 10
    • 84860145876 scopus 로고    scopus 로고
    • HDF-EOS interface based on HDF5, volume 1: Overview and examples. http://www.hdfeos.org/reference/Info-docs/HDF-EOS/guides/HDFEOS-5-Lib-User- Guides/HDFEOS5-ug-vol1-may-2004.pdf.
  • 12
    • 84860145873 scopus 로고    scopus 로고
    • Nexus. http://www.nexusformat.org.
  • 13
    • 84875379930 scopus 로고    scopus 로고
    • MATLAB. http://www.mathworks.com.
    • MATLAB
  • 14
    • 84860174287 scopus 로고    scopus 로고
    • Netcdf. http://www.unidata.ucar.edu/software/netcdf/.
    • Netcdf


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.