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Volumn 696, Issue , 2011, Pages 225-232

Tandem Mass Spectrometry Spectral Libraries and Library Searching

Author keywords

[No Author keywords available]

Indexed keywords

PEPTIDE;

EID: 79952197054     PISSN: 10643745     EISSN: 19406029     Source Type: Book Series    
DOI: 10.1007/978-1-60761-987-1_13     Document Type: Chapter
Times cited : (8)

References (15)
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    • (2008) Physiol Genomics , vol.33 , Issue.1 , pp. 18-25
    • Deutsch, E.W.1    Lam, H.2    Aebersold, R.3
  • 2
    • 0032159387 scopus 로고    scopus 로고
    • Method to compare collision-induced dissociation spectra of peptides: Potential for library searching and subtrac-tive analysis
    • Yates JR 3rd et al (1998) Method to compare collision-induced dissociation spectra of peptides: potential for library searching and subtrac-tive analysis. Anal Chem 70(17):3557–3565
    • (1998) Anal Chem , vol.70 , Issue.17 , pp. 3557-3565
    • Yates, J.R.1
  • 3
    • 33947366516 scopus 로고    scopus 로고
    • Development and validation of a spectral library searching method for peptide identification from MS/MS
    • Lam H et al (2007) Development and validation of a spectral library searching method for peptide identification from MS/MS. Proteomics 7(5):655–667
    • (2007) Proteomics , vol.7 , Issue.5 , pp. 655-667
    • Lam, H.1
  • 4
    • 33747170146 scopus 로고    scopus 로고
    • Using annotated peptide mass spectrum libraries for protein identification
    • Craig R et al (2006) Using annotated peptide mass spectrum libraries for protein identification. J Proteome Res 5(8):1843–1849
    • (2006) J Proteome Res , vol.5 , Issue.8 , pp. 1843-1849
    • Craig, R.1
  • 5
    • 33747626954 scopus 로고    scopus 로고
    • Analysis of peptide MS/MS spectra from large-scale proteomics experiments using spectrum libraries
    • Frewen BE et al (2006) Analysis of peptide MS/MS spectra from large-scale proteomics experiments using spectrum libraries. Anal Chem 78(16):5678–5684
    • (2006) Anal Chem , vol.78 , Issue.16 , pp. 5678-5684
    • Frewen, B.E.1
  • 6
    • 11144320641 scopus 로고    scopus 로고
    • Open source system for analyzing, validating, and storing protein identification data
    • Craig R, Cortens JP, Beavis RC (2004) Open source system for analyzing, validating, and storing protein identification data. J ProteomRes 3(6):1234–1242
    • (2004) J Proteomres , vol.3 , Issue.6 , pp. 1234-1242
    • Craig, R.1    Cortens, J.P.2    Beavis, R.C.3
  • 8
    • 33746930864 scopus 로고    scopus 로고
    • A uniform proteomics MS/MS analysis platform utilizing open XML file formats
    • Keller A et al (2005) A uniform proteomics MS/MS analysis platform utilizing open XML file formats. Mol Syst Biol, 1: p. 2005.0017.
    • (2005) Mol Syst Biol , vol.1 , pp. 17
    • Keller, A.1
  • 9
    • 77949676526 scopus 로고    scopus 로고
    • A guided tour of the Trans-Proteomic Pipeline
    • Deutsch EW et al (2010) A guided tour of the Trans-Proteomic Pipeline. Proteomics 10(6): 1150–1159
    • (2010) Proteomics , vol.10 , Issue.6 , pp. 1150-1159
    • Deutsch, E.W.1
  • 10
    • 0037108887 scopus 로고    scopus 로고
    • Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
    • Keller A et al (2002) Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. Anal Chem 74:5383–5392
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    • Keller, A.1
  • 11
    • 58149391408 scopus 로고    scopus 로고
    • A spectral clustering approach to MS/MS identification of posttranslational modifications
    • Falkner JA et al (2008) A spectral clustering approach to MS/MS identification of posttranslational modifications. J Proteome Res 7(11):4614–4622
    • (2008) J Proteome Res , vol.7 , Issue.11 , pp. 4614-4622
    • Falkner, J.A.1
  • 12
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    • Open mass spectrometry search algorithm
    • Geer LY et al (2004) Open mass spectrometry search algorithm. J Proteome Res 3(5): 958–964
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  • 13
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    • Building consensus spectral libraries for peptide identification in proteomics
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    • Lam, H.1
  • 14
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    • mzML: A single, unifying data format for mass spectrometer output
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    • Deutsch, E.1
  • 15
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    • JonesAR et al The mzIdentML data standard for mass spectrometry-based proteomics results
    • submitted
    • JonesAR et al The mzIdentML data standard for mass spectrometry-based proteomics results. Nat Biotechnol, submitted.
    • Nat Biotechnol


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