-
1
-
-
34848913861
-
The RAGNYA fold: A novel fold with multiple topological variants found in functionally diverse nucleic acid, nucleotide and peptide-binding proteins
-
DOI 10.1093/nar/gkm558
-
Balaji S, Aravind L,. 2007. The RAGNYA fold: a novel fold with multiple topological variants found in functionally diverse nucleic acid, nucleotide and peptide-binding proteins. Nucleic Acids Res. 35: 5658-5671. (Pubitemid 47506285)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.17
, pp. 5658-5671
-
-
Balaji, S.1
Aravind, L.2
-
2
-
-
0033214860
-
RMPs: Recombination/replication mediator proteins
-
DOI 10.1016/S0968-0004(99)01451-6, PII S0968000499014516
-
Beernink HT, Morrical SW,. 1999. RMPs: recombination/replication mediator proteins. Trends Biochem. Sci. 24: 385-389. (Pubitemid 29450445)
-
(1999)
Trends in Biochemical Sciences
, vol.24
, Issue.10
, pp. 385-389
-
-
Beernink, H.T.H.1
Morrical, S.W.2
-
3
-
-
13444282478
-
PriA helicase and SSB interact physically and functionally
-
DOI 10.1093/nar/gkh980
-
Cadman CJ, McGlynn P,. 2004. PriA helicase and SSB interact physically and functionally. Nucleic Acids Res. 32: 6378-6387. (Pubitemid 40202096)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.21
, pp. 6378-6387
-
-
Cadman, C.J.1
McGlynn, P.2
-
4
-
-
33847795537
-
Regulation of bacterial RecA protein function
-
DOI 10.1080/10409230701260258, PII 772603338
-
Cox MM,. 2007. Regulation of bacterial RecA protein function. Crit. Rev. Biochem. Mol. Biol. 42: 41-63. (Pubitemid 46391133)
-
(2007)
Critical Reviews in Biochemistry and Molecular Biology
, vol.42
, Issue.1
, pp. 41-63
-
-
Cox, M.M.1
-
5
-
-
0030014904
-
In vitro and in vivo function of the C-terminus of Escherichia coil single-stranded DNA binding protein
-
DOI 10.1093/nar/24.14.2706
-
Curth U, Genschel J, Urbanke C, Greipel J,. 1996. In vitro and in vivo function of the C-terminus of Escherichia coli single-stranded DNA binding protein. Nucleic Acids Res. 24: 2706-2711. (Pubitemid 26239738)
-
(1996)
Nucleic Acids Research
, vol.24
, Issue.14
, pp. 2706-2711
-
-
Curth, U.1
Genschel, J.2
Urbanke, C.3
Greipel, J.4
-
6
-
-
34548847733
-
Using circular dichroism spectra to estimate protein secondary structure
-
Greenfield NJ,. 2006. Using circular dichroism spectra to estimate protein secondary structure. Nat. Protoc. 1: 2876-2890.
-
(2006)
Nat. Protoc.
, vol.1
, pp. 2876-2890
-
-
Greenfield, N.J.1
-
7
-
-
0036597231
-
Bacteriophages: Evolution of the majority
-
DOI 10.1006/tpbi.2002.1590
-
Hendrix RW,. 2002. Bacteriophages: evolution of the majority. Theor. Popul. Biol. 61: 471-480. (Pubitemid 38051050)
-
(2002)
Theoretical Population Biology
, vol.61
, Issue.4
, pp. 471-480
-
-
Hendrix, R.W.1
-
8
-
-
0033562629
-
Analyzing protein circular dichroism spectra for accurate secondary structures
-
DOI 10.1002/(SICI)1097-0134(19990515)35:3<307::AID-PROT4>3.0.CO;2-3
-
Johnson WC,. 1999. Analyzing protein circular dichroism spectra for accurate secondary structures. Proteins 35: 307-312. (Pubitemid 29200967)
-
(1999)
Proteins: Structure, Function and Genetics
, vol.35
, Issue.3
, pp. 307-312
-
-
Johnson, W.C.1
-
9
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch W, Sander C,. 1983. Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 22: 2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
10
-
-
0037180443
-
Escherichia coli RecO protein anneals ssDNA complexed with its cognate ssDNA-binding protein: A common step in genetic recombination
-
DOI 10.1073/pnas.252633399
-
Kantake N, Madiraju MV, Sugiyama T, Kowalczykowski SC,. 2002. Escherichia coli RecO protein anneals ssDNA complexed with its cognate ssDNA-binding protein: a common step in genetic recombination. Proc. Natl. Acad. Sci. USA 99: 15327-15332. (Pubitemid 35403934)
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.24
, pp. 15327-15332
-
-
Kantake, N.1
Madiraju, M.V.V.M.2
Sugiyama, T.3
Kowalczykowski, S.C.4
-
11
-
-
0030881051
-
Toroidal structure of λ-exonuclease
-
Kovall R, Matthews BW,. 1997. Toroidal structure of λ-exonuclease. Science 277: 1824-1827.
-
(1997)
Science
, vol.277
, pp. 1824-1827
-
-
Kovall, R.1
Matthews, B.W.2
-
12
-
-
0014216084
-
An exonuclease induced by bacteriophage λ. II. Nature of the enzymatic reaction
-
Little JW,. 1967. An exonuclease induced by bacteriophage λ. II. Nature of the enzymatic reaction. J. Biol. Chem. 242: 679-686.
-
(1967)
J. Biol. Chem.
, vol.242
, pp. 679-686
-
-
Little, J.W.1
-
13
-
-
29544436053
-
The RecF protein antagonizes RecX function via direct interaction
-
DOI 10.1016/j.molcel.2005.11.011, PII S1097276505017715
-
Lusetti SL, Hobbs MD, Stohl EA, Chitteni-Pattu S, Inman RB, Seifert HS, Cox MM,. 2006. The RecF protein antagonizes RecX function via direct interaction. Mol. Cell 21: 41-50. (Pubitemid 43017847)
-
(2006)
Molecular Cell
, vol.21
, Issue.1
, pp. 41-50
-
-
Lusetti, S.L.1
Hobbs, M.D.2
Stohl, E.A.3
Chitteni-Pattu, S.4
Inman, R.B.5
Seifert, H.S.6
Cox, M.M.7
-
14
-
-
41149174663
-
Acidic C-terminal tail of the ssDNA-binding protein of bacteriophage T7 and ssDNA compete for the same binding surface
-
DOI 10.1073/pnas.0711919105
-
Marintcheva B, Marintchev A, Wagner G, Richardson CC,. 2008. Acidic C-terminal tail of the ssDNA-binding protein of bacteriophage T7 and ssDNA compete for the same binding surface. Proc. Natl. Acad. Sci. USA 105: 1855-1860. (Pubitemid 351439429)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.6
, pp. 1855-1860
-
-
Marintcheva, B.1
Marintchev, A.2
Wagner, G.3
Richardson, C.C.4
-
15
-
-
23844469446
-
Functional similarities between phage λ Orf and Escherichia coli RecFOR in initiation of genetic exchange
-
DOI 10.1073/pnas.0503399102
-
Maxwell KL, Reed P, Zhang RG, Beasley S, Walmsley AR, Curtis FA, Joachimiak A, Edwards AM, Sharples GJ,. 2005. Functional similarities between phage λ Orf and Escherichia coli RecFOR in initiation of genetic exchange. Proc. Natl. Acad. Sci. USA 102: 11260-11265. (Pubitemid 41153808)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.32
, pp. 11260-11265
-
-
Maxwell, K.L.1
Reed, P.2
Zhang, R.-G.3
Beasley, S.4
Walmsley, A.R.5
Curtis, F.A.6
Joachimiak, A.7
Edwards, A.M.8
Sharples, G.J.9
-
16
-
-
0038392868
-
RecFOR proteins load RecA protein onto gapped DNA to accelerate DNA strand exchange: A universal step of recombinational repair
-
DOI 10.1016/S1097-2765(03)00188-6
-
Morimatsu K, Kowalczykowski SC,. 2003. RecFOR proteins load RecA protein onto gapped DNA to accelerate DNA strand exchange: a universal step of recombinational repair. Mol. Cell 11: 1337-1347. (Pubitemid 36645151)
-
(2003)
Molecular Cell
, vol.11
, Issue.5
, pp. 1337-1347
-
-
Morimatsu, K.1
Kowalczykowski, S.C.2
-
17
-
-
0022912797
-
The homologous recombination system of phage λ. Pairing activities of β protein
-
Muniyappa K, Radding CM,. 1986. The homologous recombination system of phage λ. Pairing activities of β-protein. J. Biol. Chem. 261: 7472-7478. (Pubitemid 17224754)
-
(1986)
Journal of Biological Chemistry
, vol.261
, Issue.16
, pp. 7472-7478
-
-
Muniyappa, K.1
Radding, C.M.2
-
18
-
-
1942507939
-
Modulation of DNA Repair and Recombination by the Bacteriophage λ Orf Function in Escherichia coli K-12
-
DOI 10.1128/JB.186.9.2699-2707.2004
-
Poteete AR,. 2004. Modulation of DNA repair and recombination by the bacteriophage λ Orf function in Escherichia coli K-12. J. Bacteriol. 186: 2699-2707. (Pubitemid 38525924)
-
(2004)
Journal of Bacteriology
, vol.186
, Issue.9
, pp. 2699-2707
-
-
Poteete, A.R.1
-
19
-
-
0035838535
-
What makes the bacteriophage λ Red system useful for genetic engineering: Molecular mechanism and biological function
-
DOI 10.1016/S0378-1097(01)00242-7, PII S0378109701002427
-
Poteete AR,. 2001. What makes the bacteriophage λ Red system useful for genetic engineering: molecular mechanism and biological function. FEMS Microbiol. Lett. 201: 9-14. (Pubitemid 32607512)
-
(2001)
FEMS Microbiology Letters
, vol.201
, Issue.1
, pp. 9-14
-
-
Poteete, A.R.1
-
20
-
-
40549083336
-
Involvement of DNA replication in phage lambda Red-mediated homologous recombination
-
DOI 10.1111/j.1365-2958.2008.06133.x
-
Poteete AR,. 2008. Involvement of DNA replication in phage λ Red-mediated homologous recombination. Mol. Microbiol. 68: 66-74. (Pubitemid 351363778)
-
(2008)
Molecular Microbiology
, vol.68
, Issue.1
, pp. 66-74
-
-
Poteete, A.R.1
-
21
-
-
10344259670
-
Strand invasion promoted by recombination protein β of coliphage λ
-
DOI 10.1073/pnas.0408046101
-
Rybalchenko N, Golub EI, Bi B, Radding CM,. 2004. Strand invasion promoted by recombination protein β of coliphage λ. Proc. Natl. Acad. Sci. USA 101: 17056-17060. (Pubitemid 39627773)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.49
, pp. 17056-17060
-
-
Rybalchenko, N.1
Golub, E.I.2
Bi, B.3
Radding, C.M.4
-
22
-
-
0026567307
-
Phage λ has an analog of Escherichia coli recO, recR and recF genes
-
Sawitzke JA, Stahl FW,. 1992. Phage λ has an analog of Escherichia coli recO, recR and recF genes. Genetics 130: 7-16.
-
(1992)
Genetics
, vol.130
, pp. 7-16
-
-
Sawitzke, J.A.1
Stahl, F.W.2
-
23
-
-
3042615627
-
Holliday junction binding and resolution by the Rap structure-specific endonuclease of phage λ
-
DOI 10.1016/j.jmb.2004.05.030, PII S0022283604005996
-
Sharples GJ, Curtis FA, McGlynn P, Bolt EL,. 2004. Holliday junction binding and resolution by the Rap structure-specific endonuclease of phage λ. J. Mol. Biol. 340: 739-751. (Pubitemid 38829635)
-
(2004)
Journal of Molecular Biology
, vol.340
, Issue.4
, pp. 739-751
-
-
Sharples, G.J.1
Curtis, F.A.2
McGlynn, P.3
Bolt, E.L.4
-
24
-
-
54349118941
-
SSB as an organizer/mobilizer of genome maintenance complexes
-
Shereda RD, Kozlov AG, Lohman TM, Cox MM, Keck JL,. 2008. SSB as an organizer/mobilizer of genome maintenance complexes. Crit. Rev. Biochem. Mol. Biol. 43: 289-318.
-
(2008)
Crit. Rev. Biochem. Mol. Biol.
, vol.43
, pp. 289-318
-
-
Shereda, R.D.1
Kozlov, A.G.2
Lohman, T.M.3
Cox, M.M.4
Keck, J.L.5
-
25
-
-
34547121734
-
A central role for SSB in Escherichia coli RecQ DNA helicase function
-
DOI 10.1074/jbc.M608011200
-
Shereda RD, Bernstein DA, Keck JL,. 2007. A central role for SSB in Escherichia coli RecQ DNA helicase function. J. Biol. Chem. 282: 19247-19258. (Pubitemid 47100133)
-
(2007)
Journal of Biological Chemistry
, vol.282
, Issue.26
, pp. 19247-19258
-
-
Shereda, R.D.1
Bernstein, D.A.2
Keck, J.L.3
-
26
-
-
0034672325
-
Estimation of protein secondary structure from circular dichroism spectra: Comparison of CONTIN, SELCON, and CDSSTR methods with an expanded reference set
-
DOI 10.1006/abio.2000.4880
-
Sreerama N, Woody RW,. 2000. Estimation of protein secondary structure from circular dichroism spectra: comparison of CONTIN, SELCON, and CDSSTR methods with an expanded reference set. Anal. Biochem. 287: 252-260. (Pubitemid 32006234)
-
(2000)
Analytical Biochemistry
, vol.287
, Issue.2
, pp. 252-260
-
-
Sreerama, N.1
Woody, R.W.2
-
27
-
-
0028034452
-
Protein interactions in genetic recombination in Escherichia coli. Interactions involving RecO and RecR overcome the inhibition of RecA by single-stranded DNA-binding protein
-
Umezu K, Kolodner RD,. 1994. Protein interactions in genetic recombination in Escherichia coli. Interactions involving RecO and RecR overcome the inhibition of RecA by single-stranded DNA-binding protein. J. Biol. Chem. 269: 30005-30013.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 30005-30013
-
-
Umezu, K.1
Kolodner, R.D.2
-
28
-
-
0030700498
-
Recombinational DNA repair: The RecF and RecR proteins limit the extension of RecA filaments beyond single-strand DNA gaps
-
DOI 10.1016/S0092-8674(00)80418-3
-
Webb BL, Cox MM, Inman RB,. 1997. Recombinational DNA repair: the RecF and RecR proteins limit the extension of RecA filaments beyond single-strand DNA gaps. Cell 91: 347-356. (Pubitemid 27467965)
-
(1997)
Cell
, vol.91
, Issue.3
, pp. 347-356
-
-
Webb, B.L.1
Cox, M.M.2
Inman, R.B.3
-
29
-
-
14144253224
-
The BRCA2 homologue Brh2 nucleates RAD51 filament formation at a dsDNA-ssDNA junction
-
DOI 10.1038/nature03234
-
Yang H, Li Q, Fan J, Holloman WK, Pavletich NP,. 2005. The BRCA2 homologue Brh2 nucleates RAD51 filament formation at a dsDNA-ssDNA junction. Nature 433: 653-657. (Pubitemid 40283000)
-
(2005)
Nature
, vol.433
, Issue.7026
, pp. 653-657
-
-
Yang, H.1
Li, Q.2
Fan, J.3
Holloman, W.K.4
Pavletich, H.P.5
|