Philippine bent-toed geckos of the cyrtodactylus agusanensis complex: Multilocus phylogeny, morphological diversity, and descriptions of three new species

Herpetological Monographs

Volumn 24, Issue , 2010, Pages 55-85

  Welton, Luke J ^a   Siler, Cameron D ^a   Linkem, Charles W ^a   Diesmos, Arvin C ^b   Brown, Rafe M ^a  

^a UNIVERSITY OF KANSAS   (United States)

^b National Museum of the Philippines   (Philippines)

Author keywords

Cyrtodactylus; Geckos; Gekkonidae; New species; Philippines; Species delimitation

Indexed keywords

CYRTODACTYLUS; GEKKONIDAE; GONATODES;

EID: 79952142438     PISSN: 07331347     EISSN: None     Source Type: Book Series    
DOI: 10.1655/HERPMONOGRAPHS-D-10-00005.1     Document Type: Article

References (50)

1. BOULENGER, G. A. 1885. Catalogue of the Lizards of the British Museum (Natural History), Volume 1. British Museum (Natural History), London, UK.
2. BROWN, J. B., S. H. HEDTKE, A. R. LEMMON, and E. M. LEMMON. 2010. When trees grow too long: investigating the causes of highly inaccurate Bayesian branch-length estimates. Systematic Biology 59:145-161.
3. BROWN, R. M., and A. C. ALCALA. 2000. Geckos, cave frogs, and small land-bridge islands in the Visayan sea. Haring Ibon 2:19-22.
4. BROWN, R. M., and A. C. DIESMOS. 2001(2002). Application of lineage-based species concepts to oceanic island frog populations: The effects of differing taxonomic philosophies on the estimation of Philippine biodiversity. Silliman Journal 42:133-162.
5. BROWN, R. M., and S. I. GUTTMAN. 2002. Phylogenetic systematics of the Rana signata complex of Philippine and Bornean stream frogs: Reconsideration of Huxley's modification of Wallace's Line at the Oriental-Australian faunal zone interface. Biological Journal of the Linnaean Society 76:393-461.
6. BROWN, R. M., J. A. MCGUIRE, and A. C. DIESMOS. 2000. Status of some Philippine frogs related to Rana everetti (Anura: Ranidae), description of a new species, and resurrection of Rana igorota Taylor 1922. Herpetologica 56:81-104. (Pubitemid 30147005)
7. BROWN, R. M., C. OLIVEROS, C. D. SILER, and A. C. DIESMOS. 2008. A new Gekko from the Babuyan Islands, northern Philippines. Herpetologica 64:305-320.
8. BROWN, R. M., C. OLIVEROS, C. D. SILER, and A. C. DIESMOS. 2009a. Phylogeny of Gekko from the northern Philippines, and description of a new species from Calayan Island. Journal of Herpetology 43:620-635.
9. BROWN, R. M., C. D. SILER, A. C. DIESMOS, and A. C. ALCALA. 2009b. Philippine frogs of the genus Leptobrachium (Anura; Megophryidae): Taxonomic revision, phylogenybased species delimitation, and descriptions of three new species. Herpetological Monographs 23:1-44.
10. BROWN, R. M., A. C. DIESMOS, M. V. DUYA, H. J. D. GARCIA, and E. L. RICO. 2010. A new forest gecko (Squamata; Gekkonidae; Genus Luperosaurus) from Mt. Mantalingajan, southern Palawan Island, Philippines. Journal of Herpetology 44:37-48.
11. BROWN, W. C., and A. C. ALCALA. 1978. Philippine Lizards of the Family Gekkonidae. Silliman University Press, Dumaguete City, Philippines.
12. DE QUEIROZ, K. 1998. The general lineage concept of species. Species criteria, and the process of speciation. Pp. 57-75. In D. J. Howard and S. H. Berlocher (Eds.), Endless Forms: Species and Speciation. Oxford University Press, New York, New York, USA.
13. EDGAR, R. C. 2004. MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32:1792-1797. (Pubitemid 38832724)
14. ESSELSTYN, J. A., H. J. D. GARCIA, M. G. SAULOG, and L. R. HEANEY. 2008. A new species of Desmalopex (Pteropodidae) from the Philippines, with a phylogenetic analysis of the Pteropodini. Journal of Mammalogy 89:815-825.
15. FROST, D. R., and D. M. HILLIS. 1990. Species in concept and practice: Herpetological applications. Herpetologica 46:87-104.
16. GAULKE, M. 1994. Notes on the herpetofauna of Panaon and Samar, East Visayas, Philippines. Hamadrayad 19:1-10.
17. GAULKE, M., H. RÖSLER, and R. M. BROWN. 2007. A new species of Luperosaurus (Squamata; Gekkonidae) from Panay Island, Philippines, with comments on the taxonomic status of Luperosaurus cumingii (Gray, 1845). Copeia 2007:413-425. (Pubitemid 47164611)
18. GÜNTHER, A. 1879. List of the mammals, reptiles and batrachians sent by Mr. Everett from the Philippine islands. Proceedings of the Zoological Society of London 1879:74-79.
19. HALL, R. 1998. The plate tectonics of Cenozoic SE Asia and the distribution of land and sea. Pp. 99-131. In R. Hall and J. D. Holloway (Eds.), Biogeography and Geological Evolution of SE Asia. Backhuys Publishers, Leiden, The Netherlands.
20. HALL, R. 2002. Cenozoic geological and plate tectonic evolution of SE Asia and the SW Pacific: Computerbased reconstructions and animations. Journal of Asian Earth Sciences 20:353-434.
21. HILLIS, D. M., and J. J. BULL. 1993. An empirical test of bootstrapping as a method for assessing confidence in phylogenetic studies. Systematic Biology 42:182-192.
22. International Commission on Zoological Nomenclature. 1999, International Code of Zoological Nomenclature, Fourth Edition. International Trust for Zoological Nomenclature and The Natural History Museum, London, UK.
23. LEVITON, A. E., R. H. GIBBS, JR., E. HEAL, and C. E. DAWSON. 1985. Standards in herpetology and ichthyology: Part I. Standard symbolic codes for institutional resource collections in herpetology and ichthyology. Copeia 1985:802-821.
24. LINKEM, C. W., C. D. SILER, A. C. DIESMOS, and R. M. BROWN. 2010. A new species of Gekko (Squamata: Gekkonidae) from central Luzon Island, Philippines. Zootaxa 2396:37-94.
25. MARSHALL, D. C. 2010. Cryptic failure of partitioned Bayesian phylogenetic analyses: Lost in the land of long trees. Systematic Biology 59:108-117.
26. MARSHALL, D. C., C. SIMON, and T. R. BUCKLEY. 2006. Accurate branch length estimation in partitioned Bayesian analyses requires accommodation of amongpartition rate variation and attention to branch length priors. Systematic Biology 55:993-1003.
27. POSADA, D., and K. A. CRANDALL. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14:817-818. (Pubitemid 28552116)
28. RAMBAUT, A. 2002. SE-AL Sequence Alignment Editor, v2.0a11. University of Oxford, Oxford, UK.
29. RAMBAUT, A., and A. J. DRUMMOND. 2007. Tracer v1.4. Available at: http://beast.bio.ed.ac.uk/Tracer.
30. RONQUIST, F., and J. P. HUELSENBECK. 2003. MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574. (Pubitemid 37038874)
31. RÖSLER, H., C. D. SILER, R. M. BROWN, A. D. DEMEGILLO, and M. GAULKE. 2006. Gekko ernstkelleri sp. n. -A new gekkonid lizard from Panay Island, Philippines. Salamandra 42:197-211.
32. ROSS, C. A., and J. LAZELL. 1991. Amphibians and reptiles of Dinagat and Siargao islands, Philippines. Philippine Journal of Science 119:257-286.
33. SILER, C. D., C. W. LINKEM, A. C. DIESMOS, and A. C. ALCALA. 2007. New Species of the Genus Platymantis (Amphibia; Anura; Ranidae) from Panay Island, Philippines. Herpetologica 63:351-364. (Pubitemid 350003467)
34. SILER, C. D., A. C. ALCALA, A. C. DIESMOS, and R. M. BROWN. 2009. A new species of limestone forest frog, genus Platymantis (Amphibia: Anura: Ceratobatrachidae) from eastern Samar Island, Philippines. Herpetologica 65:92-105.
35. SILER, C. D., J. R. OAKS, J. A. ESSELSTYN, A. C. DIESMOS, and R. M. BROWN. 2010. Phylogeny and biogeography of Philippine bent-toed geckos (Gekkonidae: Cyrtodactylus) contradict a prevailing model of Pleistocene diversification. Molecular Phylogenetics and Evolution 55:699-710.
36. SIMPSON, G. G. 1961. Principles of Animal Taxonomy. Columbia University Press, New York, New York, USA.
37. STAMATAKIS, A. 2006. RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688-2690. (Pubitemid 44642609)
38. STAMATAKIS, A., F. BLAGOJEVIC, D. NIKOLOPOULOS, and C. ANTONOPOULOS. 2007. Exploring new search algorithms and hardware for phylogenetics: RAxML meets the IBM cell. Journal of VLSI Signal Processing 48:271-286. (Pubitemid 47357714)
39. *and other methods). Sinauer Associates, Sunderland, Massachusetts, USA.
40. TAYLOR, E. H. 1915. New species of Philippine lizards. Philippine Journal of Science 10:89-108.
41. TAYLOR, E. H. 1922. The Lizards of the Philippine Islands. Philippine Bureau of Science, Monograph 17, Manila, Philippines.
42. TRI, N. V., L. L. GRISMER, and J. L. GRISMER. 2008. A new endemic cave dwelling species of Cyrtodactylus Gray, 1827 (Squamata: Gekkonidae) in Kien Giang Biosphere Reserve, southwestern Vietnam. Zootaxa 1967:53-62.
43. UNDERWOOD, G. L. 1954. On the classification and evolution of geckos. Proceedings of the Zoological Society of London 124:469-492.
44. VORIS, H. K. 2000. Maps of Pleistocene sea levels in Southeast Asia: Shorelines, river systems and time durations. Journal of Biogeography 27:1153-1167. (Pubitemid 32100812)
45. WELTON, L. J., C. D. SILER, A. C. DIESMOS, and R. M. BROWN. 2009. A new bent-toed gecko (Genus Cyrtodactylus) from southern Palawan Island, Philippines, and clarification of the taxonomic status of C. annulatus. Herpetologica 65:323-343.
46. WELTON, L. J., C. D. SILER, A. C. DIESMOS, and R. M. BROWN. 2010. Phylogeny-based species delimitation of southern Philippine bent-toed geckos and a new species of Cyrtodactylus (Squamata: Gekkonidae) from western Mindanao and the Sulu Archipelago. Zootaxa 2390:49-68.
47. WERMUTH, H. 1965. Liste der rezenten Amphibien und Reptilien: Gekkonidae, Pygopodidae, Xantusiidae. Das Tierreich 80. Walter de Gruyter & Co., Berlin, Germany.
48. WILEY, E. O. 1978. The evolutionary species concept reconsidered. Systematic Zoology 21:17-26.
49. WILGENBUSCH, J. C., D. L. WARREN, and D. L. SWOFFORD. 2004. AWTY: A system for graphical exploration of MCMC convergence in Bayesian phylogenetic inference. Available at: http://ceb.csit.fsu.edu/awty.
50. YUMUL, G., JR., C. DIMILANTA, K. QUEAÑO, and E. MARQUEZ. 2009. Philippines, geology. Pp. 732-738. In R. Gillespie and D. Clague (Eds.), Encyclopedia of Islands. University of California Press, Berkeley, California, USA.