Proteomic assessment of host-associated microevolution in the fungus Thielaviopsis basicola

Environmental Microbiology

Volumn 13, Issue 3, 2011, Pages 576-588

  Coumans, J V F ^a,b   Harvey, J ^c   Backhouse, D ^a   Poljak, A ^d   Raftery, M J ^d   Nehl, D ^b,e   Katz, M E ^a   Pereg, L ^a,b  

^a UNIVERSITY OF NEW ENGLAND   (Australia)

^b Australian Cotton Research Institute   (Australia)

^c UNIVERSITY OF QUEENSLAND   (Australia)

^d UNIVERSITY OF NEW SOUTH WALES   (Australia)

^e NSW DEPARTMENT OF PRIMARY INDUSTRIES   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

FUNGAL PROTEIN; PROTEOME;

ARTICLE; ASCOMYCETES; AUSTRALIA; CHEMISTRY; EVOLUTION; GENETICS; HOST PATHOGEN INTERACTION; MASS SPECTROMETRY; METABOLISM; PATHOGENICITY; PROTEOMICS; VIRULENCE;

ASCOMYCOTA; AUSTRALIA; BIOLOGICAL EVOLUTION; FUNGAL PROTEINS; HOST-PATHOGEN INTERACTIONS; MASS SPECTROMETRY; PROTEOME; PROTEOMICS; VIRULENCE;

FUNGI; GOSSYPIUM HIRSUTUM; THIELAVIOPSIS BASICOLA;

EID: 79952085647     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/j.1462-2920.2010.02358.x     Document Type: Article

References (47)

1. Alderete, J.F., Millsap, K.W., Lehker, M.W., and Benchimol, M. (2001) Enzymes on microbial pathogens and Trichomonas vaginalis: molecular mimicry and functional diversity. Cell Microbiol 3: 359-370.
2. Allen, S.J. (1990) Thielaviopsis basicola, a new record on cotton in Australia. Australas Plant Pathol 19: 24-25.
3. Andrianopoulos, A., and Hynes, M.J. (1988) Cloning and analysis of the positively acting regulatory gene amdR from Aspergillus nidulans. Mol Cell Biol 8: 3532-3541.
4. Baker, C.J., Harrington, T.C., Krauss, U., and Alfenas, A.C. (2003) Genetic variability and host specialization in the Latin American clade of Ceratocystis fimbriata. Phytopathology 93: 1274-1284.
5. Barbosa, M.S., Bao, S.N., Andreotti, P.F., de Faria, F.P., Felipe, M.S., dos Santos Feitosa, L., etal. (2006) Glyceraldehyde-3-phosphate dehydrogenase of Paracoccidioides brasiliensis is a cell surface protein involved in fungal adhesion to extracellular matrix proteins and interaction with cells. Infect Immun 74: 382-389.
6. Butler, M.J., Day, A.W., Henson, J.M., and Money, N.P. (2001) Pathogenic properties of fungal melanins. Mycologia 93: 1-8.
7. Candiano, G., Bruschi, M., Musante, L., Santucci, L., Ghiggeri, G.M., Carnemolla, B., etal. (2004) Blue silver: a very sensitive colloidal Coomassie G-250 staining for proteome analysis. Electrophoresis 25: 1327-1333.
8. Christou, T. (1962) Penetration and host parasite relationships of Thielaviopsis basicola in the bean plant. Phytopathology 52: 194-198.
9. Coumans, J.V.F., Poljak, A., Raftery, M.J., Backhouse, D., and Pereg-Gerk, L. (2009) Analysis of cotton (Gossypium hirsutum) root proteomes during a compatible interaction with the black root rot fungus Thielaviopsis basicola. Proteomics 9: 335-349.
10. Coumans, J.V.F., Moens, P.D.J., Poljak, A., Al-Jaaidi, S., Pereg, L., and Raftery, M.J. (2010) Plant extract induced changes in the proteome of the soil-borne pathogenic fungus Thielaviopsis basicola. Proteomics 10: 1573-1591.
11. Dixon, L.J., Schlub, R.L., Pernezny, K., and Datnoff, L.E. (2009) Host specialization and phylogenetic diversity of Corynespora cassiicola. Phytopathology 99: 1015-1027.
12. Durner, J., and Klessig, D.F. (1999) Nitric oxide as a signal in plants. Curr Opin Plant Biol 2: 369-374.
13. El-Bebany, A.F., Rampitsch, C., and Daayf, F. (2010) Proteomic analysis of the phytopathogenic soilborne fungus Verticillium dahliae reveals differential protein expression in isolates that differ in aggressiveness. Proteomics 10: 289-303.
14. Fernandez-Acero, F.J., Jorge, I., Calvo, E., Vallejo, I., Carbu, M., Camafeita, E., etal. (2006) Two-dimensional electrophoresis protein profile of the phytopathogenic fungus Botrytis cinerea. Proteomics 6 (Suppl. 1): S88-S96.
15. Freisleben, A., Schieberle, P., and Rychlik, M. (2003) Specific and sensitive quantification of folate vitamers in foods by stable isotope dilution assays using high-performance liquid chromatography-tandem mass spectrometry. Anal Bioanal Chem 376: 149-156.
16. Gatlin, C.L., Kleemann, G.R., Hays, L.G., Link, A.J., and Yates, J.R., 3rd (1998) Protein identification at the low femtomole level from silver-stained gels using a new fritless electrospray interface for liquid chromatography-microspray and nanospray mass spectrometry. Anal Biochem 263: 93-101.
17. Geldenhuis, M.M., Roux, J., Cilliers, A.J., Wingfield, B.D., and Wingfield, M.J. (2006) Clonality in South African isolates and evidence for a European origin of the root pathogen Thielaviopsis basicola. Mycol Res 110: 306-311.
18. Gobert, A.P., McGee, D.J., Akhtar, M., Mendz, G.L., Newton, J.C., Cheng, Y., etal. (2001) Helicobacter pylori arginase inhibits nitric oxide production by eukaryotic cells: a strategy for bacterial survival. Proc Natl Acad Sci USA 98: 13844-13849.
19. González, D., Cubeta, M.A., and Vilgalys, R. (2006) Phylogenetic utility of indels within ribosomal DNA and beta-tubulin sequences from fungi in the Rhizoctonia solani species complex. Mol Phylogenet Evol 40: 459-470.
20. Görg, A., Obermaier, C., Boguth, G., Harder, A., Scheibe, B., Wildgruber, R., and Weiss, W. (2000) The current state of two-dimensional electrophoresis with immobilized pH gradients. Electrophoresis 21: 1037-1053.
21. Gozalbo, D., Gil-Navarro, I., Azorin, I., Renau-Piqueras, J., Martinez, J.P., and Gil, M.L. (1998) The cell wall-associated glyceraldehyde-3-phosphate dehydrogenase of Candida albicans is also a fibronectin and laminin binding protein. Infect Immun 66: 2052-2059.
22. Hawthorne, B.T., and Tsao, P.H. (1970) Effects of separation of spores from the chain and of culture age on germination of chlamydospores of Thielaviopsis basicola. Phytopathology 60: 891-895.
23. Hernandez, R., Nombela, C., Diez-Orejas, R., and Gil, C. (2004) Two-dimensional reference map of Candida albicans hyphal forms. Proteomics 4: 374-382.
24. Hood, M.E., and Shew, H.D. (1997) Initial cellular interactions between Thielaviopsis basicola and tobacco root hairs. Phytopathology 87: 228-235.
25. Johnson, J. (1916) Host plants of Thielavia basicola. J Agric Res 7: 289-300.
26. King, C.J., and Presley, J.T. (1942) A root rot of cotton caused by Thielaviopsis basicola. Phytopathology 32: 752-761.
27. Lim, H., Eng, J., Yates, J.R., 3rd, Tollaksen, S.L., Giometti, C.S., Holden, J.F., etal. (2003) Identification of 2D-gel proteins: a comparison of MALDI/TOF peptide mass mapping to mu LC-ESI tandem mass spectrometry. J Am Soc Mass Spectrom 14: 957-970.
28. Lindermann, R.G., and Toussoun, T.A. (1966) Behaviour of albino chlamydospores of Thielaviopsis basicola. Phytopathology 56: 887 (Abstr).
29. McDowell, J.M., and Dangl, J.L. (2000) Signal transduction in the plant immune response. Trends Biochem Sci 25: 79-82.
30. Meyer, J.R., and Shew, H.D. (1991) Soils suppressive to black root rot of burley tobacco, caused by Thielaviopsis basicola. Phytopathology 81: 946-954.
31. Nag Raj, T.R., and Kendrick, B. (1975) A Monograph of Chalara and Allied Genera. Waterloo, ON: Wilfred Laurier University Press.
32. Nan, Z.B., Long, P.G., Skipp, R.A., and Hopcroft, D.H. (1992) Microscopy of invasion of red clover roots by Trichocladium basicola, and effects of benomyl and prochloraz. Plant Pathol 41: 449-461.
33. Nehl, D.B., Allen, S.J., Mondal, A.H., and Lonergan, P.A. (2004) Black root rot: a pandemic in Australian cotton. Australas Plant Pathol 33: 87-95.
34. Nilsson, R.H., Kristiansson, E., Ryberg, M., Hallenberg, N., and Larsson, K.H. (2008) Intraspecific ITS variability in the kingdom fungi as expressed in the International Sequence Databases and its implications for molecular species identification. Evol Bioinform 4: 193-201.
35. Nittler, M.P., Hocking-Murray, D., Foo, C.K., and Sil, A. (2005) Identification of Histoplasma capsulatum transcripts induced in response to reactive nitrogen species. Mol Biol Cell 16: 4792-4813.
36. O'Brien, R.G., and Davis, R.D. (1994) Lettuce black root rot - a disease caused by Chalara elegans. Australas Plant Pathol 23: 106-111.
37. Otani, Y. (1962) Studies on the black root rot disease caused by Thielaviopsis basicola (Berk. & Br.) Ferraris. Bull. Okayama. Tob Exp Stn 23: 1-118.
38. Paulin-Mahady, A.E., Harrington, T.C., and McNew, D. (2002) Phylogenetic and taxonomic evaluation of Chalara, Chalaropsis, and Thielaviopsis anamorphs associated with Ceratocystis. Mycologia 94: 62-72.
39. Punja, Z.K. (2004) Virulence of Chalara elegans on bean leaves, and host-tissue responses to infection. Can J Plant Pathol 26: 52-62.
40. Punja, Z.K., and Sun, L.J. (1999) Morphological and molecular characterization of Chalara elegans (Thielaviopsis basicola), cause of black root rot on diverse plant species. Can J Bot 77: 1801-1812.
41. Sirover, M.A. (2005) New nuclear functions of the glycolytic protein, glyceraldehyde-3-phosphate dehydrogenase, in mammalian cells. J Cell Biochem 95: 45-52.
42. Tamura, K., Dudley, J., Nei, M., and Kumar, S. (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0. Mol Biol Evol 24: 1596-1599.
43. Thompson, J.E., Fahnestock, S., Farrall, L., Liao, D.I., Valent, B., and Jordan, D.B. (2000) The second naphthol reductase of fungal melanin biosynthesis in Magnaporthe grisea: tetrahydroxynaphthalene reductase. J Biol Chem 275: 34867-34872.
44. Wendehenne, D., Pugin, A., Klessig, D.F., and Durner, J. (2001) Nitric oxide: comparative synthesis and signaling in animal and plant cells. Trends Plant Sci 6: 177-183.
45. White, T., Bruns, T., Lee, S., Taylor, J., Innis, M., Gelfand, D., and Shinsky, J. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In PCR Protocols: A Guide to Methods and Applications. Innis, M., Gelfand, D., Shinsky, J., and White, T. (eds). San Diego, CA, USA: Academic Press, pp. 315-322.
46. Xu, B., Yoshida, Y., Zhang, Y., Yaoita, E., Osawa, T., and Yamamoto, T. (2005) Two-dimensional electrophoretic profiling of normal human kidney: differential protein expression in glomerulus, cortex and medulla. J Electrophor 49: 5-13.
47. Yarwood, C.E. (1981) The occurrence of Chalara elegans. Mycologia 73: 524-530.