메뉴 건너뛰기




Volumn 80, Issue 1, 2011, Pages 60-69

Characterization of the aerobic hydrocarbon-oxidizing enrichments from a high-temperature petroleum reservoir by comparative analysis of DNA- and RNA-derived clone libraries

Author keywords

16S crDNA; 16S rRNA genes; alkB genes; Geobacillus; n alkane oxidation; oil fields; Pannonibacter; Shewanella; thermophiles

Indexed keywords

BACTERIA (MICROORGANISMS); GEOBACILLUS; PANNONIBACTER; PSEUDOMONAS; SHEWANELLA; TEPIDIPHILUS;

EID: 79952075728     PISSN: 00262617     EISSN: None     Source Type: Journal    
DOI: 10.1134/S0026261711010140     Document Type: Article
Times cited : (20)

References (31)
  • 2
    • 0001109711 scopus 로고
    • Microbial Oil Transformation Processes Accompanied by Methane and Hydrogen-Sulfide Formation
    • Nazina, T. N., Rozanova, E. P., and Kuznetsov, S. I., Microbial Oil Transformation Processes Accompanied by Methane and Hydrogen-Sulfide Formation, Geomicrobiol. J., 1985, vol. 4, pp. 103-130.
    • (1985) Geomicrobiol. J. , vol.4 , pp. 103-130
    • Nazina, T.N.1    Rozanova, E.P.2    Kuznetsov, S.I.3
  • 4
    • 0035064602 scopus 로고    scopus 로고
    • Taxonomic Study of Aerobic Thermophilic Bacilli
    • Nazina, T. N., Tourova, T. P., Poltaraus, A. B., Novikova, E. V., Grigoryan, A. A., Ivanova, A. E., Lysenko, A. M., Petrunyaka, V. V., Osipov, G. A., Belyaev, S. S., and Ivanov, M. V., Taxonomic Study of Aerobic Thermophilic Bacilli: Descriptions of Geobacillus subterraneus gen. nov., sp. nov. and Geobacillus uzenensis sp. nov. from Petroleum Reservoirs and Transfer of Bacillus stearothermophilus, Bacillus thermocatenulatus, Bacillus thermoleovorans, Bacillus kaustophilus, Bacillus thermoglucosidasius and Bacillus thermodenitrificans to Geobacillus as the New Combinations G. stearothermophilus, G. thermocatenulatus, G. thermoleovorans, G. kaustophilus, G. thermoglucosidasius and G. thermodenitrificans, Int. J. Syst. Evol. Microbiol., 2001, vol. 51, pp. 433-446.
    • (2001) Int. J. Syst. Evol. Microbiol. , vol.51 , pp. 433-446
    • Nazina, T.N.1    Tourova, T.P.2    Poltaraus, A.B.3    Novikova, E.V.4    Grigoryan, A.A.5    Ivanova, A.E.6    Lysenko, A.M.7    Petrunyaka, V.V.8    Osipov, G.A.9    Belyaev, S.S.10    Ivanov, M.V.11
  • 7
    • 34248385250 scopus 로고    scopus 로고
    • Genome and Proteome of Long-Chain Alkane Degrading Geobacillus thermodenitrificans NG80-2 Isolated from a Deep-Subsurface Oil Reservoir
    • Feng, L., Wang, W., Cheng, J., Ren, Y., Zhao, G., Gao, C., Tang, Y., Liu, X., Han, W., Peng, X., Liu, R., and Wang, L., Genome and Proteome of Long-Chain Alkane Degrading Geobacillus thermodenitrificans NG80-2 Isolated from a Deep-Subsurface Oil Reservoir, Proc. Natl. Acad. Sci. U. S. A., 2007, vol. 104, pp. 5602-5607.
    • (2007) Proc. Natl. Acad. Sci. U.S.A. , vol.104 , pp. 5602-5607
    • Feng, L.1    Wang, W.2    Cheng, J.3    Ren, Y.4    Zhao, G.5    Gao, C.6    Tang, Y.7    Liu, X.8    Han, W.9    Peng, X.10    Liu, R.11    Wang, L.12
  • 8
    • 0033850347 scopus 로고    scopus 로고
    • Distribution of alkB Genes within n-Alkane-Degrading Bacteria
    • Vomberg, A. and Klinner, U., Distribution of alkB Genes within n-Alkane-Degrading Bacteria, J. Appl. Microbiol., 2000, vol. 89, pp. 339-348.
    • (2000) J. Appl. Microbiol. , vol.89 , pp. 339-348
    • Vomberg, A.1    Klinner, U.2
  • 11
    • 48049103680 scopus 로고    scopus 로고
    • AlkB Homologs in Thermophilic Bacteria of the Genus Geobacillus
    • [Mol. Biol. (Moscow) (Engl. Transl.), vol. 42, no. 2, pp. 217-226]
    • Tourova, T. P., Nazina, T. N., Mikhailova, E. M., Rodionova, T. A., Ekimov, A. N., Mashukova, A. V., and Poltaraus, A. B., alkB Homologs in Thermophilic Bacteria of the Genus Geobacillus, Mol. Biol. (Moscow), 2008, vol. 42, no. 2, pp. 247-257. [Mol. Biol. (Moscow) (Engl. Transl.), vol. 42, no. 2, pp. 217-226].
    • (2008) Mol. Biol. , vol.42 , Issue.2 , pp. 247-257
    • Tourova, T.P.1    Nazina, T.N.2    Mikhailova, E.M.3    Rodionova, T.A.4    Ekimov, A.N.5    Mashukova, A.V.6    Poltaraus, A.B.7
  • 12
    • 0141670227 scopus 로고    scopus 로고
    • Geochemical Influence on Diversity and Microbial Processes in High-Temperature Oil Reservoirs
    • Orphan, V. J., Goffredi, S. K., Delong, E. F., and Boles, J. R., Geochemical Influence on Diversity and Microbial Processes in High-Temperature Oil Reservoirs, Geomicrobiol. J., 2003, vol. 20, pp. 295-311.
    • (2003) Geomicrobiol. J. , vol.20 , pp. 295-311
    • Orphan, V.J.1    Goffredi, S.K.2    Delong, E.F.3    Boles, J.R.4
  • 13
    • 33646693656 scopus 로고    scopus 로고
    • Phylogenetic Diversity and Activity of Anaerobic Microorganisms of High-Temperature Horizons of the Dagang Oil Field (P. R. China)
    • [Microbiology (Engl. Transl.), vol. 75 no. 1, pp. 55-65]
    • Nazina, T. N., Shestakova, N. M., Grigor'yan, A. A., Mikhailova, E. M., Tourova, T. P., Poltaraus, A. B., Cingxian Feng, Fangtian Ni, and Belyaev, S. S. Phylogenetic Diversity and Activity of Anaerobic Microorganisms of High-Temperature Horizons of the Dagang Oil Field (P. R. China), Mikrobiologiya, 2006, vol. 75, no. 1, pp. 70-81 [Microbiology (Engl. Transl.), vol. 75 no. 1, pp. 55-65].
    • (2006) Mikrobiologiya , vol.75 , Issue.1 , pp. 70-81
    • Nazina, T.N.1    Shestakova, N.M.2    Grigor'yan, A.A.3    Mikhailova, E.M.4    Tourova, T.P.5    Poltaraus, A.B.6    Feng, C.7    Ni, F.8    Belyaev, S.S.9
  • 14
    • 33947239403 scopus 로고    scopus 로고
    • Molecular Phylogenetic Diversity of the Microbial Community Associated with a High-Temperature Petroleum Reservoir at an Offshore Oilfield
    • Li, H., Yang, S. Z., Mu, B. Z., Rong, Z. F., and Zhang, J., Molecular Phylogenetic Diversity of the Microbial Community Associated with a High-Temperature Petroleum Reservoir at an Offshore Oilfield, FEMS Microbiol. Ecol., 2007, vol. 60, pp. 74-84.
    • (2007) FEMS Microbiol. Ecol. , vol.60 , pp. 74-84
    • Li, H.1    Yang, S.Z.2    Mu, B.Z.3    Rong, Z.F.4    Zhang, J.5
  • 16
    • 0035321749 scopus 로고    scopus 로고
    • Combined Use of 16S Ribosomal DNA and 16S rRNA To Study the Bacterial Community of Polychlorinated Biphenyl-Polluted Soil
    • Nogales, B., Moore, E. R., Llobet-Brossa, E., Rossello-Mora, R., Amann, R., and Timmis, K. N., Combined Use of 16S Ribosomal DNA and 16S rRNA To Study the Bacterial Community of Polychlorinated Biphenyl-Polluted Soil, Appl. Environ. Microbiol., 2001, vol. 67, pp. 1874-1884.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 1874-1884
    • Nogales, B.1    Moore, E.R.2    Llobet-Brossa, E.3    Rossello-Mora, R.4    Amann, R.5    Timmis, K.N.6
  • 17
    • 20444365770 scopus 로고    scopus 로고
    • Characterization of Microbial Community Structure in Gulf of Mexico Gas Hydrates: Comparative Analysis of DNA- and RNA-Derived Clone Libraries
    • Mills, H. J., Martinez, R. J., Story, S., and Sobecky, P. A., Characterization of Microbial Community Structure in Gulf of Mexico Gas Hydrates: Comparative Analysis of DNA- and RNA-Derived Clone Libraries, Appl. Environ. Microbiol., 2005, vol. 71, pp. 3235-3247.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 3235-3247
    • Mills, H.J.1    Martinez, R.J.2    Story, S.3    Sobecky, P.A.4
  • 18
    • 0032846469 scopus 로고    scopus 로고
    • Identification of Novel Bacterial Lineages as Active Members of Microbial Populations in a Freshwater Sediment Using a Rapid RNA Extraction Procedure and RT-PCR
    • Miskin, I. P., Farrimond, P., and Head, I. M., Identification of Novel Bacterial Lineages as Active Members of Microbial Populations in a Freshwater Sediment Using a Rapid RNA Extraction Procedure and RT-PCR, Microbiology (UK), 1999, vol. 145, pp. 1977-1987.
    • (1999) Microbiology (UK) , vol.145 , pp. 1977-1987
    • Miskin, I.P.1    Farrimond, P.2    Head, I.M.3
  • 19
    • 33646697536 scopus 로고    scopus 로고
    • The Properties of Hydrocarbon-Oxidizing Bacteria Isolated from the Oilfields of Tatarstan, Western Siberia, and Vietnam
    • [Microbiology (Engl. Transl.), vol. 75 no. 1, pp. 66-72]
    • Borzenkov, I. A., Milekhina, E. I., Gotoeva, M. T., Rozanova, E. P., and Belyaev, S. S., The Properties of Hydrocarbon-Oxidizing Bacteria Isolated from the Oilfields of Tatarstan, Western Siberia, and Vietnam, Mikrobiologiya, 2006, vol. 75, no. 1, pp. 82-89 [Microbiology (Engl. Transl.), vol. 75 no. 1, pp. 66-72].
    • (2006) Mikrobiologiya , vol.75 , Issue.1 , pp. 82-89
    • Borzenkov, I.A.1    Milekhina, E.I.2    Gotoeva, M.T.3    Rozanova, E.P.4    Belyaev, S.S.5
  • 20
    • 0028948030 scopus 로고
    • PCR Amplification and Direct Sequencing of gyrB Genes with Universal Primers and Their Application to the Detection and Taxonomic Analysis of Pseudomonas putida Strains
    • Yamamoto, S. and Harayama, S., PCR Amplification and Direct Sequencing of gyrB Genes with Universal Primers and Their Application to the Detection and Taxonomic Analysis of Pseudomonas putida Strains, Appl. Environ. Microbiol., 1995, vol. 61, pp. 1104-1109.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 1104-1109
    • Yamamoto, S.1    Harayama, S.2
  • 21
    • 77953493228 scopus 로고    scopus 로고
    • Application of gyrB and pare Sequence Similarity Analyses for Differentiation of Species within the Genus Geobacillus
    • [Microbiology (Engl. Transl.), vol. 79 no. 3, pp. 356-369]
    • Tourova, T. P., Korshunova, A. V., Mikhailova, E. M., Sokolova, D. Sh., Poltaraus, A. B., and Nazina, T. N., Application of gyrB and pare Sequence Similarity Analyses for Differentiation of Species within the Genus Geobacillus, Mikrobiologiya, 2010, vol. 79, no. 3, pp. 376-389 [Microbiology (Engl. Transl.), vol. 79 no. 3, pp. 356-369].
    • (2010) Mikrobiologiya , vol.79 , Issue.3 , pp. 376-389
    • Tourova, T.P.1    Korshunova, A.V.2    Mikhailova, E.M.3    Sokolova, D.S.4    Poltaraus, A.B.5    Nazina, T.N.6
  • 22
    • 0030025916 scopus 로고    scopus 로고
    • A Computer Analysis of Primer and Probe Hybridization Potential with Bacterial Small-Subunit rRNA Sequences
    • Brunk, C. F., Avaniss-Aghajani, E., and Brunk, C. A., A Computer Analysis of Primer and Probe Hybridization Potential with Bacterial Small-Subunit rRNA Sequences, Appl. Environ. Microbiol., 1996, vol. 61, pp. 872-879.
    • (1996) Appl. Environ. Microbiol. , vol.61 , pp. 872-879
    • Brunk, C.F.1    Avaniss-Aghajani, E.2    Brunk, C.A.3
  • 23
    • 0026067797 scopus 로고
    • 16S Ribosomal DNA Amplification for Phylogenetic Study
    • Weisburg, W. G., Barns, S. M., Pelletier, D. A., and Lane, D. J., 16S Ribosomal DNA Amplification for Phylogenetic Study, J. Bacteriol., 1991, vol. 173, pp. 697-703.
    • (1991) J. Bacteriol. , vol.173 , pp. 697-703
    • Weisburg, W.G.1    Barns, S.M.2    Pelletier, D.A.3    Lane, D.J.4
  • 24
    • 2242442558 scopus 로고    scopus 로고
    • Designing and Testing Oligonucleotide Primers for Amplification and Sequencing of Archaeal 16S rRNA Genes
    • [Microbiology (Engl. Transl.), vol. 71 no. 2, pp. 243-246]
    • Kolganova, T. V., Kuznetsov, B. B., and Tourova, T. P., Designing and Testing Oligonucleotide Primers for Amplification and Sequencing of Archaeal 16S rRNA Genes, Mikrobiologiya, 2002, vol. 71, no. 2, pp. 283-285 [Microbiology (Engl. Transl.), vol. 71 no. 2, pp. 243-246].
    • (2002) Mikrobiologiya , vol.71 , Issue.2 , pp. 283-285
    • Kolganova, T.V.1    Kuznetsov, B.B.2    Tourova, T.P.3
  • 25
    • 15844381829 scopus 로고
    • CLUSTAL W: Improving the Sensitivity of Progressive Multiple Sequence Alignment Through Sequence Weighting, Positions-Specific Gap Penalties and Weight Matrix Choice
    • Thompson, J. D., Higgins, D. G., and Gibson, T. J., CLUSTAL W: Improving the Sensitivity of Progressive Multiple Sequence Alignment Through Sequence Weighting, Positions-Specific Gap Penalties and Weight Matrix Choice, Nucleic Acids Res., 1994, vol. 9, pp. 3251-3270.
    • (1994) Nucleic Acids Res. , vol.9 , pp. 3251-3270
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 26
    • 0023375195 scopus 로고
    • The Neighbour-Joining Method: a New Method for Reconstructing Phylogenetic Trees
    • Saitou, N. and Nei, M., The Neighbour-Joining Method: a New Method for Reconstructing Phylogenetic Trees, Mol. Biol. Evol., 1987, vol. 4, pp. 406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 27
    • 0028509254 scopus 로고
    • TREECON for Windows: a Software Package for the Construction and Drawing of Evolutionary Trees for the Microsoft Windows Environment
    • van de Peer, Y. and De Wachter, R., TREECON for Windows: a Software Package for the Construction and Drawing of Evolutionary Trees for the Microsoft Windows Environment, Comput. Appl. Biosci., 1994, vol. 10, pp. 569-570.
    • (1994) Comput. Appl. Biosci. , vol.10 , pp. 569-570
    • de van Peer, Y.1    de Wachter, R.2
  • 28
    • 0034742629 scopus 로고    scopus 로고
    • Isolation and Characterization of Psychotrophic Bacteria from Oil-Reservoir Water and Oil Sands
    • Kato, T., Haruki, M., Imanaka, T., Morikawa, M., and Kanaya, S., Isolation and Characterization of Psychotrophic Bacteria from Oil-Reservoir Water and Oil Sands, Appl. Microbiol. Biotechnol., 2001, vol. 55, pp. 794-800.
    • (2001) Appl. Microbiol. Biotechnol. , vol.55 , pp. 794-800
    • Kato, T.1    Haruki, M.2    Imanaka, T.3    Morikawa, M.4    Kanaya, S.5
  • 29
    • 19544363079 scopus 로고    scopus 로고
    • Influence of Crude Oil on Changes of Bacterial Communities in Arctic Sea-Ice
    • Gerdes, B., Brinkmeyer, R., Dieckmann, G., and Helmke, E., Influence of Crude Oil on Changes of Bacterial Communities in Arctic Sea-Ice, FEMS Microbiol. Ecol., 2005, vol. 53, pp. 129-139.
    • (2005) FEMS Microbiol. Ecol. , vol.53 , pp. 129-139
    • Gerdes, B.1    Brinkmeyer, R.2    Dieckmann, G.3    Helmke, E.4
  • 30
    • 0141502479 scopus 로고    scopus 로고
    • Tepidiphilus margaritifer gen. nov., sp. nov., Isolated from a Thermophilic Aerobic Digester
    • Manaia, C. M., Nogales, B., and Nunes, O. C., Tepidiphilus margaritifer gen. nov., sp. nov., Isolated from a Thermophilic Aerobic Digester, Int. J. Syst. Evol. Microbiol., 2003, vol. 53, pp. 1405-1410.
    • (2003) Int. J. Syst. Evol. Microbiol. , vol.53 , pp. 1405-1410
    • Manaia, C.M.1    Nogales, B.2    Nunes, O.C.3
  • 31
    • 0034969905 scopus 로고    scopus 로고
    • Analysis of Pseudomonas putida Alkane Degradation Gene Clusters and Flanking Insertion Sequences: Evolution and Regulation of the alk-Genes
    • van Beilen, J. B., Panke, S., Lucchini, S., Franchini, A. G., Röthlisberger, M., and Witholt, B., Analysis of Pseudomonas putida Alkane Degradation Gene Clusters and Flanking Insertion Sequences: Evolution and Regulation of the alk-Genes, Microbiology (UK), 2001, vol. 147, pp. 1621-1630.
    • (2001) Microbiology (UK) , vol.147 , pp. 1621-1630
    • van Beilen, J.B.1    Panke, S.2    Lucchini, S.3    Franchini, A.G.4    Röthlisberger, M.5    Witholt, B.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.