Bacteria-based communication in nanonetworks

Nano Communication Networks

Volumn 1, Issue 4, 2010, Pages 244-256

  Cobo, Luis C ^a   Akyildiz, Ian F ^a  

^a GEORGIA INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

Bacteria based nanonetwork

Indexed keywords

ANALYTICAL MODEL; BACTERIAL CHEMOTAXIS; BIOLOGICAL MECHANISMS; BIOLOGICAL PHENOMENA; COMMUNICATION RANGE; DNA MOLECULES; END TO END DELAY; END-TO-END THROUGHPUT; EUKARYOTIC CELLS; MOLECULAR COMMUNICATION; NANO DEVICE; NANO-NETWORKS; NANONETWORK; ORDERS OF MAGNITUDE; PROPAGATION DELAYS; SIMULATION RESULT;

BACTERIOLOGY; BIOCHEMISTRY; COMMUNICATION; COMPUTER SIMULATION; MATHEMATICAL MODELS; MODELS; NETWORK PERFORMANCE;

BACTERIA;

EID: 79951954447     PISSN: 18787789     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.nancom.2010.12.002     Document Type: Article

References (41)

1. Achtman M., Kennedy N., Skurray R. Cellcell interactions in conjugating Escherichia coli: role of traT protein in surface exclusion. Proceedings of the National Academy of Sciences of the United States of America 1977, 74(11):5104.
2. Adleman L. Molecular computation of solutions to combinatorial problems. Science 1994, 266(5187):1021-1023.
3. Adler J. Chemotaxis in bacteria. Harvey Lectures 1978, 72:195-230.
4. Akyildiz I.F., Brunetti F., Blázquez C. Nanonetworks: a new communication paradigm. Computer Networks (Elsevier Journal) 2008, 52:2260-2279.
5. Akyildiz I.F., Jornet J.M. Electromagnetic wireless nanosensor networks. Nano Communication Networks (Elsevier Journal) 2010, 1(1):3-19.
6. Benenson Y., Paz-Elizur T., Adar R., Keinan E., Livneh Z., Shapiro E. Programmable and autonomous computing machine made of biomolecules. Nature 2001, 414(6862):430-434.
7. Berg H. E. coli in Motion 2003, Springer Verlag.
8. Block S., Segall J., Berg H. Impulse responses in bacterial chemotaxis. Cell 1982, 31(1):215-226.
9. Bossert W., Wilson E. The analysis of olfactory communication among animals. Journal of Theoretical Biology 1963, 5(3):443-469.
10. Bray D., Levin M.D., Lipkow K. The chemotactic behavior of computer-based surrogate bacteria. Current Biology 2007, 17(1):12-19.
11. Cooper S., Helmstetter C.E. Chromosome replication and the division cycle of E. coli B/r. Journal of Molecular Biology 1968, 31(3):519-540.
12. Drake J.W., Charlesworth B., Charlesworth D., Crow J.F. Rates of spontaneous mutation. Genetics 1998, 148(4):1667-1686.
13. A.W. Eckford, Nanoscale Communication with Brownian Motion, in: Conference on Information Sciences and Systems, 2007, CISS'07, Mar. 2007, pp. 160-165.
14. Elbaz J., Lioubashevski O., Wang F., Remacle F., Levine R.D., Willner I. DNA computing circuits using libraries of DNAzyme subunits. Nature Nanotechnology 2010, 5(6):417-422.
15. Engelberg-Kulka H., Sat B., Reches M., Amitai S., Hazan R. Bacterial programmed cell death systems as targets for antibiotics. Trends in Microbiology 2004, 12(2):66-71.
16. Finan T.M., Weidner S., Wong K., Buhrmester J., Chain P., Vorhölter F.J., Hernandez-Lucas I., Becker A., Cowie A., Gouzy J., Golding B., Pühler A. The complete sequence of the 1,683-kb pSymB megaplasmid from the N2-fixing endosymbiont Sinorhizobium meliloti. Proceedings of the National Academy of Sciences of the United States of America 2001, 98(17):9889-9894.
17. Fire A., Xu S., Montgomery M., Kostas S., Driver S., Mello C. Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 1998, 391(6669):806-811.
18. Frost L.S., Ippen-Ihler K., Skurray R.a. Analysis of the sequence and gene products of the transfer region of the F sex factor. Microbiological Reviews 1994, 58(2):162-210.
19. Fulton C. Continuous chromosome transfer in E. coli. Genetics 1965, 52(1):55.
20. Gibson D., Glass J., Lartigue C., Noskov V., RY Creation of a bacterial cell controlled by a chemically synthesized genome. Science 2010, 329(5987):52-56.
21. Gregori M., Akyildiz I.F. A new nanonetwork architecture using flagellated bacteria and catalytic nanomotors. IEEE Journal on Selected Areas in Communications 2010, 28(4):612-619.
22. Gregori M., Llatser I., Cabellos-Aparicio A., Alarcón E. Physical channel characterization for medium-range nanonetworks using catalytic nanomotors. Nano Communication Networks (Elsevier Journal) 2010, 1(2).
23. Gregori M., Llatser I., Cabellos-Aparicio A., Alarcón E. Physical channel characterization for medium-range nano-networks using flagellated bacteria. Computer Networks 2010, 1389-1286.
24. Grossman A. Genetic networks controlling the initiation of sporulation and the development of genetic competence in bacillus subtilis. Annual Review of Genetics 1995, 29(1):477-508.
25. Hazelbauer G., Mesibov R., Adler J. E. coli mutants defective in chemotaxis toward specific chemicals. Proceedings of the National Academy of Sciences 1969, 64(4):1300.
26. Jasuja R., Lin Y., Trentham D.R., Khan S. Response tuning in bacterial chemotaxis. Proceedings of the National Academy of Sciences of the United States of America 1999, 96(20):11. 346-51.
27. Lehninger A., Nelson D., Cox M. Lehninger Principles of Biochemistry 2005, Wh Freeman.
28. Ma C., Tang Z., Wang K., Tan W., Yang X., Li W., Li Z., Lv X. Real-time monitoring of restriction endonuclease activity using molecular beacon. Analytical Biochemistry 2007, 363(2):294-296.
29. Macnab R.M., Koshland D. The gradient-sensing mechanism in bacterial chemotaxis. Proceedings of the National Academy of Sciences 1972, 69(9):2509-2512.
30. Ogura T., Hiraga S. Mini-F plasmid genes that couple host cell division to plasmid proliferation. Proceedings of the National Academy of Sciences of the United States of America 1983, 80(15):4784-4788.
31. Painter K.J., Hillen T. Volume-filling and quorum-sensing in models for chemosensitive movement. Canadian Applied Mathematics Quarterly 2002, 10(4):501-543.
32. Pierobon M., Akyildiz I. A physical end-to-end model for molecular communication in nanonetworks. IEEE Journal on Selected Areas in Communications 2010, 28(4):602-611.
33. Robert P.K.M., King C., Stansfield William D. A Dictionary of Genetics 2006, Oxford University Press, USA.
34. Rothemund P. A DNA and restriction enzyme implementation of turing machines. DNA Based Computers 1996, 6:75-119.
35. Shannon C.E. A mathematical theory of communication. The Bell System Technical Journal 1948, 27:379-423. 623-656.
36. Sourjik V., Berg H.C. Receptor sensitivity in bacterial chemotaxis. Proceedings of the National Academy of Sciences of the United States of America 2002, 99(1):123-127.
37. Stricker J., Cookson S., Bennett M., Mather W., LS A fast, robust and tunable synthetic gene oscillator. Nature 2008, 456(7221):516-519.
38. Tsimring L., Hasty J., Danino T., Mondrago O. A synchronized quorum of genetic clocks. Nature 2010, 463(7279):326-330.
39. Vladimirov N., Løvdok L., Lebiedz D., Sourjik V. Dependence of bacterial chemotaxis on gradient shape and adaptation rate. PLoS Computational Biology 2008, 4(12):e1000242.
40. Waters C.M., Bassler B.L. Quorum sensing: cell-to-cell communication in bacteria. Annual Review of Cell and Developmental Biology 2005, 21:319-346.
41. E.W. Weisstein, Pólya's Random Walk Constants. From MathWorld-A Wolfram Web Resource.