메뉴 건너뛰기




Volumn 105, Issue 2, 2011, Pages 207-214

Proteomic profile analysis and biomarker discovery from mass spectra using independent component analysis combined with uncorrelated linear discriminant analysis

Author keywords

Biomarker; Classification; Independent Component Analysis (ICA); Mass spectra; Uncorrelated linear discriminant analysis (ULDA)

Indexed keywords

BIOLOGICAL MARKER;

EID: 79951950886     PISSN: 01697439     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.chemolab.2011.01.007     Document Type: Article
Times cited : (12)

References (32)
  • 2
    • 1242328742 scopus 로고    scopus 로고
    • SELDI-TOF-based serum proteomic pattern diagnostics for early detection of cancer
    • Petricoin E.F., Liotta L.A. SELDI-TOF-based serum proteomic pattern diagnostics for early detection of cancer. Curr. Opin. Biotechnol. 2004, 15:24-30.
    • (2004) Curr. Opin. Biotechnol. , vol.15 , pp. 24-30
    • Petricoin, E.F.1    Liotta, L.A.2
  • 3
    • 0141593748 scopus 로고    scopus 로고
    • Screening of biomarkers in rat urine using LC/electrospray ionization-MS and two-way data analysis
    • Björkman H.I., Edlund P.O., Kvalheim O.M., Koistinen I.S., Jacobsson S.P. Screening of biomarkers in rat urine using LC/electrospray ionization-MS and two-way data analysis. Anal. Chem. 2003, 75:4784-4792.
    • (2003) Anal. Chem. , vol.75 , pp. 4784-4792
    • Björkman, H.I.1    Edlund, P.O.2    Kvalheim, O.M.3    Koistinen, I.S.4    Jacobsson, S.P.5
  • 4
    • 34250869494 scopus 로고    scopus 로고
    • SELDI-TOF MS versus prostate specific antigen analysis of prospective plasma samples in a nested case-control study of prostate cancer
    • Skytt Å., Thysell E., Stattin P., Stenman U.H., Antti H., Wikström P. SELDI-TOF MS versus prostate specific antigen analysis of prospective plasma samples in a nested case-control study of prostate cancer. Int. J. Cancer 2007, 121:615-620.
    • (2007) Int. J. Cancer , vol.121 , pp. 615-620
    • Skytt, Å.1    Thysell, E.2    Stattin, P.3    Stenman, U.H.4    Antti, H.5    Wikström, P.6
  • 5
    • 36148968834 scopus 로고    scopus 로고
    • Evaluation of a protocol for metabolic profiling studies on human blood plasma by combined ultra-performance liquid chromatography/mass spectrometry: from extraction to data analysis
    • Bruce S.J., Jonsson P., Antti H., Cloarec O., Trygg J., Marklund S.L., Moritz T. Evaluation of a protocol for metabolic profiling studies on human blood plasma by combined ultra-performance liquid chromatography/mass spectrometry: from extraction to data analysis. Anal. Biochem. 2008, 372:237-249.
    • (2008) Anal. Biochem. , vol.372 , pp. 237-249
    • Bruce, S.J.1    Jonsson, P.2    Antti, H.3    Cloarec, O.4    Trygg, J.5    Marklund, S.L.6    Moritz, T.7
  • 8
    • 64849110688 scopus 로고    scopus 로고
    • Discriminating variable test and selectivity ratio plot: quantitative tools for interpretation and variable (biomarker) selection in complex spectral or chromatographic profiles
    • Rajalahti T., Arneberg R., Kroksveen A.C., Berle M., Myhr K.M., Kvalheim O.M. Discriminating variable test and selectivity ratio plot: quantitative tools for interpretation and variable (biomarker) selection in complex spectral or chromatographic profiles. Anal. Chem. 2009, 81:2581-2590.
    • (2009) Anal. Chem. , vol.81 , pp. 2581-2590
    • Rajalahti, T.1    Arneberg, R.2    Kroksveen, A.C.3    Berle, M.4    Myhr, K.M.5    Kvalheim, O.M.6
  • 9
    • 19544394460 scopus 로고    scopus 로고
    • Ovarian cancer identification based on dimensionality reduction for high-throughput mass spectrometry data
    • Yu J.S., Ongarello S., Fiedler R., Chen X.W., Toffolo G., Cobelli C., Trajanoski Z. Ovarian cancer identification based on dimensionality reduction for high-throughput mass spectrometry data. Bioinformatics 2005, 21:2200-2209.
    • (2005) Bioinformatics , vol.21 , pp. 2200-2209
    • Yu, J.S.1    Ongarello, S.2    Fiedler, R.3    Chen, X.W.4    Toffolo, G.5    Cobelli, C.6    Trajanoski, Z.7
  • 10
    • 77956417496 scopus 로고    scopus 로고
    • Advances in proteomic prostate cancer biomarker discovery
    • Goo Y.A., Goodlett D.R. Advances in proteomic prostate cancer biomarker discovery. J. Prot. 2010, 10.1016/j.jprot.2010.04.002.
    • (2010) J. Prot.
    • Goo, Y.A.1    Goodlett, D.R.2
  • 11
    • 67649973822 scopus 로고    scopus 로고
    • Application of SELDI-TOF-MS to identify serum biomarkers for renal cell carcinoma
    • Xu G., Xiang C.Q., Lu Y., Kang X.N., Liao P., Ding Q., Zhang Y.F. Application of SELDI-TOF-MS to identify serum biomarkers for renal cell carcinoma. Cancer Lett. 2009, 282:205-213.
    • (2009) Cancer Lett. , vol.282 , pp. 205-213
    • Xu, G.1    Xiang, C.Q.2    Lu, Y.3    Kang, X.N.4    Liao, P.5    Ding, Q.6    Zhang, Y.F.7
  • 12
    • 61449256587 scopus 로고    scopus 로고
    • Biomarker discovery in MALDI-TOF serum protein profiles using discrete wavelet transformation
    • Alexandrov T., Decker J., Mertens B., Deelder A.M. Biomarker discovery in MALDI-TOF serum protein profiles using discrete wavelet transformation. Bioinformatics 2009, 25:643-649.
    • (2009) Bioinformatics , vol.25 , pp. 643-649
    • Alexandrov, T.1    Decker, J.2    Mertens, B.3    Deelder, A.M.4
  • 13
    • 0032629347 scopus 로고    scopus 로고
    • Fast and robust fixed-point algorithms for independent component analysis
    • Hyvärinen A. Fast and robust fixed-point algorithms for independent component analysis. IEEE Trans. Neural Netw. 1999, 10:626-634.
    • (1999) IEEE Trans. Neural Netw. , vol.10 , pp. 626-634
    • Hyvärinen, A.1
  • 14
    • 0042826822 scopus 로고    scopus 로고
    • Independent component analysis: algorithms and applications
    • Hyvärinen A., Oja E. Independent component analysis: algorithms and applications. Neural Netw. 2000, 13:411-430.
    • (2000) Neural Netw. , vol.13 , pp. 411-430
    • Hyvärinen, A.1    Oja, E.2
  • 15
    • 0033653097 scopus 로고    scopus 로고
    • An introduction to independent component analysis
    • Lathauwer L.D., Moor B.D., Vandewalle J. An introduction to independent component analysis. J. Chemometr. 2000, 14(3):123-149.
    • (2000) J. Chemometr. , vol.14 , Issue.3 , pp. 123-149
    • Lathauwer, L.D.1    Moor, B.D.2    Vandewalle, J.3
  • 18
    • 77953613559 scopus 로고    scopus 로고
    • ULDA-based heuristic feature selection method for proteomic profile analysis and biomarker discovery
    • Zhang M., Wang W., Du Y. ULDA-based heuristic feature selection method for proteomic profile analysis and biomarker discovery. Chemometr. Intell. Lab. Syst. 2010, 102:84-90.
    • (2010) Chemometr. Intell. Lab. Syst. , vol.102 , pp. 84-90
    • Zhang, M.1    Wang, W.2    Du, Y.3
  • 19
    • 51749125817 scopus 로고    scopus 로고
    • Uncorrelated linear discriminant analysis (ULDA): a powerful tool for exploration of metabolomics data
    • Yuan D., Liang Y., Yi L., Xu Q., Kvalheim O.M. Uncorrelated linear discriminant analysis (ULDA): a powerful tool for exploration of metabolomics data. Chemometr. Intell. Lab. Syst. 2008, 93:70-79.
    • (2008) Chemometr. Intell. Lab. Syst. , vol.93 , pp. 70-79
    • Yuan, D.1    Liang, Y.2    Yi, L.3    Xu, Q.4    Kvalheim, O.M.5
  • 21
    • 0035400784 scopus 로고    scopus 로고
    • Face recognition based on the uncorrelated discriminant transformation
    • Jin Z., Yang J.Y., Hu Z.S., Lou Z. Face recognition based on the uncorrelated discriminant transformation. Pattern Recognit. 2001, 34:1405-1416.
    • (2001) Pattern Recognit. , vol.34 , pp. 1405-1416
    • Jin, Z.1    Yang, J.Y.2    Hu, Z.S.3    Lou, Z.4
  • 22
    • 33748336501 scopus 로고    scopus 로고
    • Feature reduction via generalized uncorrelated linear discriminant analysis
    • Ye J., Janardan R., Li Q., Park H. Feature reduction via generalized uncorrelated linear discriminant analysis. IEEE Trans. Knowl. Data Eng. 2006, 18:1312-1322.
    • (2006) IEEE Trans. Knowl. Data Eng. , vol.18 , pp. 1312-1322
    • Ye, J.1    Janardan, R.2    Li, Q.3    Park, H.4
  • 23
    • 0028416938 scopus 로고
    • Independent component analysis, a new concept?
    • Comon P. Independent component analysis, a new concept? Signal Process. 1994, 36:287-314.
    • (1994) Signal Process. , vol.36 , pp. 287-314
    • Comon, P.1
  • 24
    • 42749097031 scopus 로고    scopus 로고
    • Independent component analysis and its applications in signal processing for analytical chemistry
    • Wang G., Ding Q., Hou Z. Independent component analysis and its applications in signal processing for analytical chemistry. Trends Anal. Chem. 2008, 27:368-376.
    • (2008) Trends Anal. Chem. , vol.27 , pp. 368-376
    • Wang, G.1    Ding, Q.2    Hou, Z.3
  • 25
    • 0032612381 scopus 로고    scopus 로고
    • High-order contrasts for independent component analysis [J]
    • Cardoso J.F. High-order contrasts for independent component analysis [J]. Neural Comput. 1999, 11(1):157-192.
    • (1999) Neural Comput. , vol.11 , Issue.1 , pp. 157-192
    • Cardoso, J.F.1
  • 26
    • 33748201591 scopus 로고    scopus 로고
    • Independent component analysis reveals new and biologically significant structures in micro array data
    • Frigyesi A., Veerla S., Lindgren D., Höglund M. Independent component analysis reveals new and biologically significant structures in micro array data. BMC Bioinform. 2006, 7:290-301.
    • (2006) BMC Bioinform. , vol.7 , pp. 290-301
    • Frigyesi, A.1    Veerla, S.2    Lindgren, D.3    Höglund, M.4
  • 27
    • 0015984922 scopus 로고
    • Nonrecursive digital filter design using the Io-sinh window function
    • Kaiser J.F. Nonrecursive digital filter design using the Io-sinh window function. Proc. IEEE Int. Symp. Circuit Theory 1974, 20-23.
    • (1974) Proc. IEEE Int. Symp. Circuit Theory , pp. 20-23
    • Kaiser, J.F.1
  • 29
    • 33646100282 scopus 로고    scopus 로고
    • A primary study on resolution of overlapping GC-MS signal using mean-field approach independent component analysis
    • Wang G., Cai W., Shao X. A primary study on resolution of overlapping GC-MS signal using mean-field approach independent component analysis. Chemometr. Intell. Lab. Syst. 2006, 82:137-144.
    • (2006) Chemometr. Intell. Lab. Syst. , vol.82 , pp. 137-144
    • Wang, G.1    Cai, W.2    Shao, X.3
  • 30
    • 0033030822 scopus 로고    scopus 로고
    • Detection and quantification limits: origins and historical overview
    • Currie L.A. Detection and quantification limits: origins and historical overview. Anal. Chim. Acta 1999, 391:127-134.
    • (1999) Anal. Chim. Acta , vol.391 , pp. 127-134
    • Currie, L.A.1
  • 31
    • 0347181849 scopus 로고    scopus 로고
    • A data review and re-assessment of ovarian cancer serum proteomic profiling
    • Sorace J.M., Zhan M. A data review and re-assessment of ovarian cancer serum proteomic profiling. BMC Bioinform. 2003, 4:24-36.
    • (2003) BMC Bioinform. , vol.4 , pp. 24-36
    • Sorace, J.M.1    Zhan, M.2
  • 32
    • 33747432967 scopus 로고    scopus 로고
    • Identification of biomarkers from mass spectrometry data using a "common" peak approach
    • Fushiki T., Fujisawa H., Eguchi S. Identification of biomarkers from mass spectrometry data using a "common" peak approach. BMC Bioinform. 2006, 7:358-366.
    • (2006) BMC Bioinform. , vol.7 , pp. 358-366
    • Fushiki, T.1    Fujisawa, H.2    Eguchi, S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.