Direct coupling of a genome-scale microbial in silico model and a groundwater reactive transport model

Journal of Contaminant Hydrology

Volumn 122, Issue 1-4, 2011, Pages 96-103

  Fang, Yilin ^a   Scheibe, Timothy D ^a   Mahadevan, Radhakrishnan ^b   Garg, Srinath ^b   Long, Philip E ^a   Lovley, Derek R ^c  

^a PACIFIC NORTHWEST NATIONAL LABORATORY   (United States)

^b UNIVERSITY OF TORONTO   (Canada)

^c UNIVERSITY OF MASSACHUSETTS   (United States)

Author keywords

BABEL; Bioremediation; Constraint based; CPLEX; Genome scale; Reactive transport

Indexed keywords

BABEL; CONSTRAINT-BASED; CPLEX; GENOME-SCALE; REACTIVE TRANSPORT;

BINARY TREES; BIODEGRADATION; BIOREMEDIATION; BIOTECHNOLOGY; ECOLOGY; GENES; GROUNDWATER; LAKES; METABOLISM; MICROORGANISMS; MODELS; PHYSIOLOGY; POLLUTION; REACTION RATES; SUBSTRATES; URANIUM;

COMPUTER SIMULATION;

GROUND WATER;

BIOREMEDIATION; COMPUTER SIMULATION; CONCENTRATION (COMPOSITION); GROUNDWATER FLOW; METABOLISM; MICROBIAL ACTIVITY; MICROORGANISM; NUMERICAL MODEL; QUANTITATIVE ANALYSIS; REACTION KINETICS; REACTIVE TRANSPORT; SPATIOTEMPORAL ANALYSIS; URANIUM;

ACCURACY; ARTICLE; BIOREMEDIATION; COMPUTATIONAL FLUID DYNAMICS; COMPUTER MODEL; COMPUTER PREDICTION; COMPUTER SIMULATION; COMPUTER SYSTEM; CONCENTRATION (PARAMETERS); FIELD EXPERIMENT; MATHEMATICAL COMPUTING; MATHEMATICAL MODEL; MICROBIAL ACTIVITY; MICROBIAL COMMUNITY; MICROBIAL GROWTH; MICROBIAL METABOLISM; NONHUMAN; PRIORITY JOURNAL; STOICHIOMETRY; TRANSPORT MEDIUM;

BIODEGRADATION, ENVIRONMENTAL; BIOLOGICAL TRANSPORT; COLORADO; COMPUTER SIMULATION; GENOME, BACTERIAL; GEOBACTER; MODELS, BIOLOGICAL; URANIUM;

EID: 79951949741     PISSN: 01697722     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jconhyd.2010.11.007     Document Type: Article

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