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Volumn , Issue , 2010, Pages 33-37

SDA*: A simple and unifying solution to recent bioinformatic challenges for conservation genetics

Author keywords

Conservation genetics; Linear programming; Phylogenetic diversity; Phylogenetic network; Split diversity; Split system

Indexed keywords

BINARY LINEAR PROGRAMMING; LINEAR OPTIMIZATION; NP-HARD PROBLEM; OPTIMAL SOLUTIONS; PHYLOGENETIC DIVERSITY; PHYLOGENETIC NETWORKS; RESERVE SELECTION; SPLIT DIVERSITY; SPLIT SYSTEM;

EID: 79951938937     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/KSE.2010.24     Document Type: Conference Paper
Times cited : (2)

References (39)
  • 1
    • 0001426025 scopus 로고
    • Taxonomy as destiny
    • R. M. May, "Taxonomy as destiny," Nature, vol. 347, pp. 129-130, 1990.
    • (1990) Nature , vol.347 , pp. 129-130
    • May, R.M.1
  • 3
    • 0031468030 scopus 로고    scopus 로고
    • Preserving the information content of species: Genetic diversity, phylogeny, and conservation worth
    • DOI 10.1146/annurev.ecolsys.28.1.243
    • R. H. Crozier, "Preserving the information content of species: Genetic diversity, phylogeny, and conservation worth," Annu. Rev. Ecol. Syst., vol. 28, pp. 243-68, 1997. (Pubitemid 28012292)
    • (1997) Annual Review of Ecology and Systematics , vol.28 , pp. 243-268
    • Crozier, R.H.1
  • 4
    • 50049129921 scopus 로고    scopus 로고
    • Colloquium paper: Three ambitious (and rather unorthodox) assignments for the field of biodiversity genetics
    • J. C. Avise, "Colloquium paper: Three ambitious (and rather unorthodox) assignments for the field of biodiversity genetics," Proc. Natl. Acad. Sci. U. S. A., vol. 105, no. Supplement 1, pp. 11 564-11 570, 2008.
    • (2008) Proc. Natl. Acad. Sci. U. S. A. , vol.105 , Issue.SUPPLEMENT 1 , pp. 11564-11570
    • Avise, J.C.1
  • 5
    • 0026076942 scopus 로고
    • What to protect? - Systematics and the agony of choice
    • R. I. Vane-Wright, C. J. Humphries, and P. H. Williams, "What to protect? - systematics and the agony of choice," Biol. Conserv., vol. 55, pp. 235-254, 1991.
    • (1991) Biol. Conserv. , vol.55 , pp. 235-254
    • Vane-Wright, R.I.1    Humphries, C.J.2    Williams, P.H.3
  • 6
    • 0026499429 scopus 로고
    • Conservation evaluation and phylogenetic diversity
    • D. P. Faith, "Conservation Evaluation and Phylogenetic Diversity," Biol. Conserv., vol. 61, pp. 1-10, 1992.
    • (1992) Biol. Conserv. , vol.61 , pp. 1-10
    • Faith, D.P.1
  • 7
    • 0026565163 scopus 로고
    • Genetic diversity and the agony of choice
    • R. H. Crozier, "Genetic diversity and the agony of choice," Biol. Conserv., vol. 61, pp. 11-15, 1992.
    • (1992) Biol. Conserv. , vol.61 , pp. 11-15
    • Crozier, R.H.1
  • 8
    • 84960589504 scopus 로고
    • On diversity
    • M. L. Weitzman, "On diversity," Q. J. Econ., vol. 107, pp. 363-405, 1992.
    • (1992) Q. J. Econ. , vol.107 , pp. 363-405
    • Weitzman, M.L.1
  • 9
    • 0029109919 scopus 로고
    • The optimization of biodiversity conservation
    • L. Witting and V. Loeschcke, "The optimization of biodiversity conservation," Biol. Conserv., vol. 71, pp. 205-207, 1995.
    • (1995) Biol. Conserv. , vol.71 , pp. 205-207
    • Witting, L.1    Loeschcke, V.2
  • 10
    • 0000300892 scopus 로고    scopus 로고
    • The Noah's Ark Problem
    • M. L. Weitzman, "The Noah's Ark problem," Econometrica, vol. 66, no. 6, pp. 1279-1298, 1998. (Pubitemid 128467210)
    • (1998) Econometrica , vol.66 , Issue.6 , pp. 1279-1298
    • Weitzman, M.L.1
  • 11
    • 0034650964 scopus 로고    scopus 로고
    • Modelling the optimal conservation of interacting species
    • L. Witting, J. Tomiuk, and V. Loeschcke, "Modelling the optimal conservation of interacting species," Ecol. Model., vol. 125, no. 2-3, pp. 123-144, 2000.
    • (2000) Ecol. Model. , vol.125 , Issue.2-3 , pp. 123-144
    • Witting, L.1    Tomiuk, J.2    Loeschcke, V.3
  • 13
    • 0035212505 scopus 로고    scopus 로고
    • A comparison of taxonomic distinctness versus richness as criteria for setting conservation priorities for north american birds
    • S. Polasky, B. Csuti, C. A. Vossler, and S. M. Meyers, "A comparison of taxonomic distinctness versus richness as criteria for setting conservation priorities for north american birds," Biol. Conserv., vol. 97, no. 1, pp. 99-105, 2001.
    • (2001) Biol. Conserv. , vol.97 , Issue.1 , pp. 99-105
    • Polasky, S.1    Csuti, B.2    Vossler, C.A.3    Meyers, S.M.4
  • 14
    • 33847114114 scopus 로고    scopus 로고
    • Integrating phylogenetic diversity in the selection of priority areas for conservation: Does it make a difference?
    • A. Purvis, J. L. Gittleman, and T. Brooks, Eds. Cambridge, UK: Cambridge University Press
    • A. S. L. Rodrigues, T. M. Brooks, and K. J. Gaston, "Integrating phylogenetic diversity in the selection of priority areas for conservation: does it make a difference?" in Phylogeny and Conservation, A. Purvis, J. L. Gittleman, and T. Brooks, Eds. Cambridge, UK: Cambridge University Press, 2005, pp. 101-119.
    • (2005) Phylogeny and Conservation , pp. 101-119
    • Rodrigues, A.S.L.1    Brooks, T.M.2    Gaston, K.J.3
  • 16
    • 17744394753 scopus 로고    scopus 로고
    • Phylogenomics and the reconstruction of the tree of life
    • DOI 10.1038/nrg1603
    • F. Delsuc, H. Brinkmann, and H. Philippe, "Phylogenomics and the reconstruction of the tree of life," Nat. Rev. Genet., vol. 6, no. 5, pp. 361-375, 2005. (Pubitemid 40577180)
    • (2005) Nature Reviews Genetics , vol.6 , Issue.5 , pp. 361-375
    • Delsuc, F.1    Brinkmann, H.2    Philippe, H.3
  • 17
    • 37549020940 scopus 로고    scopus 로고
    • Phylogenetic diversity within seconds
    • B. Q. Minh, S. Klaere, and A. von Haeseler, "Phylogenetic diversity within seconds," Syst. Biol., vol. 55, no. 5, pp. 769-773, 2006.
    • (2006) Syst. Biol. , vol.55 , Issue.5 , pp. 769-773
    • Minh, B.Q.1    Klaere, S.2    Von Haeseler, A.3
  • 18
    • 34047269226 scopus 로고    scopus 로고
    • Optimizing phylogenetic diversity under constraints
    • DOI 10.1016/j.jtbi.2006.12.021, PII S002251930600590X
    • V. Moulton, C. Semple, and M. Steel, "Optimizing phylogenetic diversity under constraints," J. Theor. Biol., vol. 246, pp. 186-194, 2007. (Pubitemid 46550519)
    • (2007) Journal of Theoretical Biology , vol.246 , Issue.1 , pp. 186-194
    • Moulton, V.1    Semple, C.2    Steel, M.3
  • 22
    • 72849134544 scopus 로고    scopus 로고
    • Taxon selection under split diversity
    • B. Q. Minh, S. Klaere, and A. von Haeseler, "Taxon selection under split diversity," Syst. Biol., vol. 58, no. 6, pp. 586-594, 2009.
    • (2009) Syst. Biol. , vol.58 , Issue.6 , pp. 586-594
    • Minh, B.Q.1    Klaere, S.2    Von Haeseler, A.3
  • 23
    • 0026911267 scopus 로고
    • Split decomposition: A new and useful approach to phylogenetic analysis of distance data
    • H.-J. Bandelt and A. W. M. Dress, "Split decomposition: A new and useful approach to phylogenetic analysis of distance data," Mol. Phylogenet. Evol., vol. 1, pp. 242-252, 1992.
    • (1992) Mol. Phylogenet. Evol. , vol.1 , pp. 242-252
    • Bandelt, H.-J.1    Dress, A.W.M.2
  • 25
    • 25144472531 scopus 로고    scopus 로고
    • Phylogenetic diversity and the greedy algorithm
    • DOI 10.1080/10635150590947023
    • M. Steel, "Phylogenetic Diversity and the Greedy Algorithm," Syst. Biol., vol. 54, no. 4, pp. 527-529, 2005. (Pubitemid 41356467)
    • (2005) Systematic Biology , vol.54 , Issue.4 , pp. 527-529
    • Steel, M.1
  • 26
    • 55449130839 scopus 로고    scopus 로고
    • Species choice for comparative genomics: Being greedy works
    • F. Pardi and N. Goldman, "Species choice for comparative genomics: Being greedy works," PLoS Genet., vol. 1, pp. 672-675, 2005.
    • (2005) PLoS Genet. , vol.1 , pp. 672-675
    • Pardi, F.1    Goldman, N.2
  • 27
    • 62249095548 scopus 로고    scopus 로고
    • Optimizing phylogenetic diversity across two trees
    • M. Bordewich, C. Semple, and A. Spillner, "Optimizing phylogenetic diversity across two trees," Appl. Math. Lett., vol. 22, no. 5, pp. 638-641, 2009.
    • (2009) Appl. Math. Lett. , vol.22 , Issue.5 , pp. 638-641
    • Bordewich, M.1    Semple, C.2    Spillner, A.3
  • 28
    • 34548546830 scopus 로고    scopus 로고
    • Resource aware taxon selection for maximizing phylogenetic diversity
    • F. Pardi and N. Goldman, "Resource aware taxon selection for maximizing phylogenetic diversity," Syst. Biol., vol. 56, no. 3, pp. 1063-5157, 2007.
    • (2007) Syst. Biol. , vol.56 , Issue.3 , pp. 1063-5157
    • Pardi, F.1    Goldman, N.2
  • 33
    • 0028133927 scopus 로고
    • Optimal and suboptimal reserve selection algorithms
    • DOI 10.1016/0006-3207(94)90302-6
    • L. Underhill, "Optimal and suboptimal reserve selection algorithms," Biol. Conserv., vol. 70, pp. 85-87, 1994. (Pubitemid 2120943)
    • (1994) Biological Conservation , vol.70 , Issue.1 , pp. 85-87
    • Underhill, L.G.1
  • 34
    • 0029668262 scopus 로고    scopus 로고
    • Reserve selection as a maximal covering location problem
    • R. L. Church, D. M. Stoms, and F. W. Davis, "Reserve selection as a maximal covering location problem," Biol. Conserv., vol. 76, pp. 105-112, 1996.
    • (1996) Biol. Conserv. , vol.76 , pp. 105-112
    • Church, R.L.1    Stoms, D.M.2    Davis, F.W.3
  • 35
    • 0036206518 scopus 로고    scopus 로고
    • Maximising phylogenetic diversity in the selection of networks of conservation areas
    • DOI 10.1016/S0006-3207(01)00208-7, PII S0006320701002087
    • A. S. L. Rodrigues and K. J. Gaston, "Maximising phylogenetic diversity in the selection of networks of conservation areas," Biol. Conserv., vol. 105, no. 1, pp. 103-111, 2002. (Pubitemid 34253408)
    • (2002) Biological Conservation , vol.105 , Issue.1 , pp. 103-111
    • Rodrigues, A.S.L.1    Gaston, K.J.2
  • 36
    • 0028554315 scopus 로고
    • Genetic distances and the setting of conservation priorities
    • V. Loeschcke, J. Tomiuk, and S. K. Jain, Eds. Basel: Birkhauser Verlag
    • R. H. Crozier and R. M. Kusmierski, "Genetic distances and the setting of conservation priorities," in Conservation Genetics, V. Loeschcke, J. Tomiuk, and S. K. Jain, Eds. Basel: Birkhauser Verlag, 1994, pp. 227-237.
    • (1994) Conservation Genetics , pp. 227-237
    • Crozier, R.H.1    Kusmierski, R.M.2
  • 37
    • 0033064013 scopus 로고    scopus 로고
    • Towards complete biodiversity assessment: An evaluation of the subterranean bacterial communities in the Oklo region of the sole surviving natural nuclear reactor
    • DOI 10.1016/S0168-6496(98)00116-0, PII S0168649698001160
    • R. H. Crozier, P.-M. Agapow, and K. Pederson, "Towards complete biodiversity assessment: an evaluation of the subterranean bacterial communities in the oklo region of the sole surviving natural nuclear reactor," FEMS Microbiol. Ecol., vol. 28, pp. 325-334, 1999. (Pubitemid 29142431)
    • (1999) FEMS Microbiology Ecology , vol.28 , Issue.4 , pp. 325-334
    • Crozier, R.H.1    Agapow, P.-M.2    Pedersen, K.3
  • 38
    • 0020697629 scopus 로고
    • An iterative method for establishing priorities for the selection of nature reserves: an example from Tasmania.
    • J. B. Kirkpatrick, "An iterative method for establishing priorities for the selection of nature reserves: an example from tasmania," Biol. Converv., vol. 25, pp. 127-134, 1983. (Pubitemid 13278866)
    • (1983) Biological Conservation , vol.25 , Issue.2 , pp. 127-134
    • Kirkpatrick, J.B.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.