Phylogenetic analysis on the arsenic-resistant bacteria isolated from three different freshwater environments

Chemistry and Ecology

Volumn 27, Issue SUPPL. 1, 2011, Pages 79-87

  Davolos, Domenico ^a   Pietrangeli, Biancamaria ^a  

^a ISPESL   (Italy)

Author keywords

16S rDNA; ArsB; Bacteroidetes; Firmicutes; Phylogeny; Proteobacteria

Indexed keywords

AQUATIC ECOSYSTEM; ARSENIC; BIOREMEDIATION; LAKE WATER; MICROBIAL ACTIVITY; PHYLOGENETICS; POLLUTION EFFECT; POLLUTION EXPOSURE; REDOX CONDITIONS; RIVER WATER; SPECIATION (CHEMISTRY); WELL WATER;

BASSANO ROMANO; ITALY; LAKE ALBANO; LAZIO; ROMA [LAZIO]; TIBER RIVER; VITERBO;

BACTERIA (MICROORGANISMS); BACTEROIDETES; FIRMICUTES; PROTEOBACTERIA;

EID: 79951776413     PISSN: 02757540     EISSN: 10290370     Source Type: Journal    
DOI: 10.1080/02757540.2010.536157     Document Type: Article

References (27)

1. W.P. Inskeep, R.E. Macur, N. Hamamura, T.P. Warelow, S.A. Ward, and J.M. Santini, Detection, diversity and expression of aerobic bacterial arsenite oxidase genes, Environ. Microbiol. 9 (2007), pp. 934-943.
2. D.K. Nordstrom, Public health. World wide occurrences of arsenic in ground water, Science 296 (2002), pp. 2143-2145.
3. R.S. Oremland and J.F. Stolz, The ecology of arsenic, Science 300 (2003), pp. 939-944.
4. R. Branco, A.P. Chung, and P.V. Morais, Sequencing and expression of two arsenic resistance operons with different functions in the highly arsenic resistant strain Ochrobactrum tritici SCII24T, BMC Microbiol. 8 (2008), p. 95.
5. D. Muller, C. Médigue, S. Koechler, V. Barbe, M. Barakat, E. Talla, V. Bonnefoy, E. Krin, F. Arsène-Ploetze, C. Carapito, M. Chandler, B. Cournoyer, S. Cruveiller, C. Dossat, S. Duval, M. Heymann, E. Leize, A. Lieutaud, D. Lièvremont, Y. Makita, S. Mangenot, W. Nitschke, P. Ortet, N. Perdrial, B. Schoepp, P. Siguier, D.D. Simeonova, Z. Rouy, B. Segurens, E. Turlin, D. Vallenet, A. Van Dorsselaer, S. Weiss, J. Weissenbach, M.C. Lett, A. Danchin, and P.N. Bertin, A tale of two oxidation states: bacterial colonization of arsenic-rich environments, PLoS Genet. 3 (2007), p. e53.
6. M. Angelone, C. Cremisini, V. Piscopo, M. Proposito, and F. Spaziani, Influence of hydrostratigraphy and structural setting on the arsenic occurrence in groundwater of the Cimino-Vico volcanic area (central Italy), Hydrogeol. J. 17 (2009), pp. 901-914.
7. W.T. Liu, T.L. Marsh, H. Cheng, and L.J. Forney, Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA, Appl. Environ. Microbiol. 63 (1997), pp. 4516-4522.
8. D. Davolos and B. Pietrangeli, Molecular and phylogenetic analysis on bacterial strains isolated from a PAHs wastewater treatment plant, in Current Research Topics in Applied Microbiology and Microbial Biotechnology, A. Mendez-Vilas, ed., World Scientific, Singapore, 2009, pp. 313-316.
9. A.R. Achour, P. Bauda, and P. Billard, Diversity of arsenite transporter genes from arsenic resistant soil bacteria, Res Microbiol. 158 (2007), pp. 128-137.
10. F. Ronquist and J.P. Huelsenbeck, MRBAYES 3: Bayesian phylogenetic inference under mixed models, Bioinformatics 19 (2003), pp. 1572-1574.
11. D. Posada, Selection of models of DNA evolution with jModel Test, Methods Mol. Biol. 537 (2009), pp. 93-112.
12. M. Dall'Aglio, Acque potabili non salubri a causa di vistose anomalie geochimiche di arsenico e fluoro nel mondo e in Italia. I casi della Toscana e del Lazio, in La crisi dei sistemi idrici: approvvig ionamento agro industriale e civile, Accademia Nazionale dei Lincei, Rome, 2007, pp. 179-194.
13. C.R. Jackson, K.G. Harrison, and S.L. Dugas, Enumeration and characterization of culturable arsenate resistant bacteria in a large estuary, Syst. Appl. Microbiol. 28 (2005), pp. 727-734.
14. M. Pepi, M. Volterrani, M. Renzi, M. Marvasi, S. Gasperini, E. Franchi, and S.E. Focardi, Arsenic-resistant bacteria isolated from contaminated sediments of the Orbetello Lagoon, Italy, and their characterization, J. Appl. Microbiol. 103 (2007), pp. 2299-2308.
15. M. Pepi, H.J. Heipieper, J. Fischer, M. Ruta, M. Volterrani, and S.E. Focardi, Membrane fatty acids adaptive profile in the simultaneous presence of arsenic and toluene in Bacillus sp. ORAs2 and Pseudomonas sp. ORAs5 strains, Extremophiles 12 (2008), pp. 343-349.
16. L. Cai, G. Liu, C. Rensing, and G. Wang, Genes involved in arsenic transformation and resistance associated with different levels of arsenic-contaminated soils, BMC Microbiol. 9 (2009), p. 4.
17. P.C. Patel, F. Goulhen, C. Boothman, A.G. Gault, J.M. Charnock, K. Kalia, and J.R. Lloyd, Arsenate detoxification in a Pseudomonad hyper tolerant to arsenic, Arch. Microbiol. 187 (2007), pp. 171-183.
18. S.A. Connon, A.K. Koski, A.L. Neal, S.A. Wood, and T.S. Magnuson, Eco physiology and geochemistry of microbial arsenic oxidation within a high arsenic, circum neutral hot spring system of the Alvord Desert, FEMS Microbiol. Ecol. 64 (2008), pp. 117-128.
19. M. Quemeneur, A. Heinrich-Salmeron, D. Muller, D. Lievremont, M. Jauzein, P.N. Bertin, F. Garrido, and C. Joulian, Diversity surveys and evolutionary relationships of aoxB genes in aerobic arsenite oxidizing bacteria, Appl. Environ. Microbiol. 74 (2008), pp. 4567-4573.
20. S. Audic, C. Robert, B. Campagna, H. Parinello, J.M. Claverie, D. Raoult, and M. Drancourt, Genome analysis of Mini bacterium massiliensis highlights the convergent evolution of water-living bacteria, PLoS Genet. 3 (2007), p. e138.
21. N. Hamamura, R.E. Macur, S. Korf, G. Ackerman, W.P. Taylor, M. Kozubal, A.L. Reysenbach, and W.P. Inskeep, Linking microbial oxidation of arsenic with detection and phylogenetic analysis of arsenite oxidase genes in diverse geothermal environments, Environ. Microbiol. 11 (2009), pp. 421-431.
22. N.S. Chauhan, R. Ranjan, H.J. Purohit, V.C. Kalia, and R. Sharma, Identification of genes conferring arsenic resistance to Escherichia coli from an effluent treatment plant sludge metagenomic library, FEMS Microbiol. Ecol. 67 (2009), pp. 130-139.
23. T.Z. DeSantis, E.L. Brodie, J.P. Moberg, I.X. Zubieta, Y.M. Piceno, and G.L. Andersen, High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment, Microb. Ecol. 53 (2007), pp. 371-383.
24. P. Mondal, C.B. Majumder, and B. Mohanty, Growth of three bacteria in arsenic solution and their application for arsenic removal from wastewater, J. Basic Microbiol. 48 (2008), pp. 521-525.
25. T.C. Hazen, R. Chakraborty, J.M. Fleming, I.R. Gregory, J.P. Bowman, L. Jimenez, D. Zhang, S.M. Pfiffner, F.J. Brockman, and G.S. Sayler, Use of gene probes to assess the impact and effectiveness of aerobic in situ bioremediation of TCE, Arch. Microbiol. 191 (2009), pp. 221-232.
26. W. Baeyens, A. De Brauwere, N. Brion, M. De Gieter, and M. Leermakers, Arsenic speciation in the River Zenne, Belgium, Sci. Total. Environ. 384 (2007), pp. 409-419.
27. R.S. Oremland and J.F. Stolz, Arsenic, microbes and contaminated aquifers, Trends Microbiol. 13 (2005), pp. 45-49.