메뉴 건너뛰기




Volumn 11, Issue SUPPL. 1, 2011, Pages 31-49

Discovery and characterization of single-nucleotide polymorphisms in steelhead/rainbow trout, Oncorhynchus mykiss

Author keywords

Oncorhynchus mykiss; Rainbow trout; Single nucleotide polymorphism; Steelhead

Indexed keywords

ANIMAL; ARTICLE; CONSENSUS SEQUENCE; DNA SEQUENCE; EXPRESSED SEQUENCE TAG; GENE FREQUENCY; GENETIC DATABASE; GENETICS; HETEROZYGOTE; NUCLEOTIDE SEQUENCE; RAINBOW TROUT; RIVER; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 79951729622     PISSN: 1755098X     EISSN: 17550998     Source Type: Journal    
DOI: 10.1111/j.1755-0998.2010.02971.x     Document Type: Article
Times cited : (38)

References (39)
  • 1
    • 33645034358 scopus 로고    scopus 로고
    • A comparison of variability and population structure for major histocompatibility complex and microsatellite loci in California coastal steelhead (Oncorhynchus mykiss Walbaum)
    • Aguilar A, Garza JC (2006) A comparison of variability and population structure for major histocompatibility complex and microsatellite loci in California coastal steelhead (Oncorhynchus mykiss Walbaum). Molecular Ecology, 15, 923-937.
    • (2006) Molecular Ecology , vol.15 , pp. 923-937
    • Aguilar, A.1    Garza, J.C.2
  • 2
    • 43949140483 scopus 로고    scopus 로고
    • Isolation of 15 single nucleotide polymorphisms from coastal steelhead, Oncorhynchus mykiss (Salmonidae)
    • Aguilar A, Garza JC (2008) Isolation of 15 single nucleotide polymorphisms from coastal steelhead, Oncorhynchus mykiss (Salmonidae). Molecular Ecology Resources, 8, 659-662.
    • (2008) Molecular Ecology Resources , vol.8 , pp. 659-662
    • Aguilar, A.1    Garza, J.C.2
  • 3
    • 33646199882 scopus 로고    scopus 로고
    • The power of single-nucleotide polymorphisms for large-scale parentage inference
    • Anderson EC, Garza JC (2006) The power of single-nucleotide polymorphisms for large-scale parentage inference. Genetics, 172, 2567-2582.
    • (2006) Genetics , vol.172 , pp. 2567-2582
    • Anderson, E.C.1    Garza, J.C.2
  • 4
    • 0034482922 scopus 로고    scopus 로고
    • Microsatellite DNA population structure and stock identification of steelhead trout (Oncorhynchus mykiss) in the Nass and Skeena Rivers in northern British Columbia
    • Beacham TD, Pollard S, Le KD (2000) Microsatellite DNA population structure and stock identification of steelhead trout (Oncorhynchus mykiss) in the Nass and Skeena Rivers in northern British Columbia. Marine Biotechnology, 2, 587-600.
    • (2000) Marine Biotechnology , vol.2 , pp. 587-600
    • Beacham, T.D.1    Pollard, S.2    Le, K.D.3
  • 5
    • 0003576389 scopus 로고    scopus 로고
    • GENETIX 4.05, logiciel sous Windows TM pour la génétique des populations
    • Laboratoire Génome, Populations, Interactions, CNRS UMR 5000, Université de Montpellier II, Montpellier (France).
    • Belkhir K, Borsa P, Chikhi L, Raufaste N, Bonhomme F (1996-2004) GENETIX 4.05, logiciel sous Windows TM pour la génétique des populations. Laboratoire Génome, Populations, Interactions, CNRS UMR 5000, Université de Montpellier II, Montpellier (France).
    • (1996)
    • Belkhir, K.1    Borsa, P.2    Chikhi, L.3    Raufaste, N.4    Bonhomme, F.5
  • 7
    • 0001983289 scopus 로고
    • Distribution and origins of steelhead trout Oncorhynchus-mykiss in offshore waters of the north Pacific Ocean
    • Burgner RL, Light JT, Margolis L et al. (1992) Distribution and origins of steelhead trout Oncorhynchus-mykiss in offshore waters of the north Pacific Ocean. International North Pacific Fisheries Commission Bulletin, 51, 1-92.
    • (1992) International North Pacific Fisheries Commission Bulletin , vol.51 , pp. 1-92
    • Burgner, R.L.1    Light, J.T.2    Margolis, L.3
  • 8
    • 0002036450 scopus 로고
    • Ancestry of artificially propagated California rainbow trout strains
    • Busack CA, Gall GAE (1980) Ancestry of artificially propagated California rainbow trout strains. California Fish and Game, 66, 17-24.
    • (1980) California Fish and Game , vol.66 , pp. 17-24
    • Busack, C.A.1    Gall, G.A.E.2
  • 9
    • 79951737992 scopus 로고    scopus 로고
    • Status Review of West Coast Steelhead from Washington, Idaho, Oregon, and California. NOAA Technical Memorandum NMFS-NWFSC-27.
    • Busby PJ, Wainwright TC, Bryant GJ et al. (1996) Status Review of West Coast Steelhead from Washington, Idaho, Oregon, and California. NOAA Technical Memorandum NMFS-NWFSC-27.
    • (1996)
    • Busby, P.J.1    Wainwright, T.C.2    Bryant, G.J.3
  • 10
    • 71949101266 scopus 로고    scopus 로고
    • Single nucleotide polymorphism discovery in rainbow trout by deep sequencing of a reduced representation library
    • doi:10.1186/1471-2164-10-559.
    • Castaño-Sánchez C, Smith TPL, Wiedmann RT et al. (2009) Single nucleotide polymorphism discovery in rainbow trout by deep sequencing of a reduced representation library. BMC Genomics, 10, doi:10.1186/1471-2164-10-559.
    • (2009) BMC Genomics , vol.10
    • Castaño-Sánchez, C.1    Smith, T.P.L.2    Wiedmann, R.T.3
  • 12
    • 70350541081 scopus 로고    scopus 로고
    • Population genetic structure and ancestry of Oncorhynchus mykiss populations above and below dams in south-central California
    • Clemento AJ, Anderson EC, Boughton D, Girman D, Garza JC (2009) Population genetic structure and ancestry of Oncorhynchus mykiss populations above and below dams in south-central California. Conservation Genetics, 10, 1321-1336.
    • (2009) Conservation Genetics , vol.10 , pp. 1321-1336
    • Clemento, A.J.1    Anderson, E.C.2    Boughton, D.3    Girman, D.4    Garza, J.C.5
  • 13
    • 37249041627 scopus 로고    scopus 로고
    • Introduction, establishment and effects of non-native salmonids: considering the risk of rainbow trout invasion in the United Kingdom
    • Fausch KD (2007) Introduction, establishment and effects of non-native salmonids: considering the risk of rainbow trout invasion in the United Kingdom. Journal of Fish Biology, 71, 1-32.
    • (2007) Journal of Fish Biology , vol.71 , pp. 1-32
    • Fausch, K.D.1
  • 15
    • 79951743876 scopus 로고    scopus 로고
    • Population genetic structure of Oncorhynchus mykiss in the California Central Valley
    • Report to the California Department of Fish and Game
    • Garza JC, Pearse DE (2008) Population genetic structure of Oncorhynchus mykiss in the California Central Valley. Report to the California Department of Fish and Game p. 54.
    • (2008) , pp. 54
    • Garza, J.C.1    Pearse, D.E.2
  • 16
    • 12444280663 scopus 로고    scopus 로고
    • Mexican native trouts: a review of their history and current systematic and conservation status
    • Hendrickson DA, Perez HE, Findley LT et al. (2002) Mexican native trouts: a review of their history and current systematic and conservation status. Reviews in Fish Biology and Fisheries, 12, 273-316.
    • (2002) Reviews in Fish Biology and Fisheries , vol.12 , pp. 273-316
    • Hendrickson, D.A.1    Perez, H.E.2    Findley, L.T.3
  • 17
    • 0034755842 scopus 로고    scopus 로고
    • Comparative analysis of population structure across environments and geographic scales at Major Histocompatibility Complex and microsatellite Atlantic salmon (Salmo salar)
    • Landry C, Bernatchez L (2001) Comparative analysis of population structure across environments and geographic scales at Major Histocompatibility Complex and microsatellite Atlantic salmon (Salmo salar). Molecular Ecology, 10, 2525-2540.
    • (2001) Molecular Ecology , vol.10 , pp. 2525-2540
    • Landry, C.1    Bernatchez, L.2
  • 18
    • 79951740835 scopus 로고    scopus 로고
    • A microsatellite genome screen identifies chromosomal regions under differential selection in steelhead and rainbow trout (Oncorhynchus mykiss)
    • in press).
    • Martínez A, Garza JC, Pearse DE (in press) A microsatellite genome screen identifies chromosomal regions under differential selection in steelhead and rainbow trout (Oncorhynchus mykiss). Transactions of the American Fisheries Society.
    • Transactions of the American Fisheries Society
    • Martínez, A.1    Garza, J.C.2    Pearse, D.E.3
  • 19
    • 0034022213 scopus 로고    scopus 로고
    • The use of single-nucleotide polymorphism maps in pharmacogenomics
    • McCarthy JJ, Hilfiker R (2000) The use of single-nucleotide polymorphism maps in pharmacogenomics. Nature Biotechnology, 18, 505-508.
    • (2000) Nature Biotechnology , vol.18 , pp. 505-508
    • McCarthy, J.J.1    Hilfiker, R.2
  • 20
    • 0034522690 scopus 로고    scopus 로고
    • Mitochondrial variation in rainbow trout Oncorhynchus mykiss across its native range: testing biogeographical hypotheses and their relevance to conservation
    • McCusker MR, Parkinson E, Taylor EB (2000) Mitochondrial variation in rainbow trout Oncorhynchus mykiss across its native range: testing biogeographical hypotheses and their relevance to conservation. Molecular Ecology, 9, 2089-2108.
    • (2000) Molecular Ecology , vol.9 , pp. 2089-2108
    • McCusker, M.R.1    Parkinson, E.2    Taylor, E.B.3
  • 21
    • 36248939215 scopus 로고    scopus 로고
    • Population structure and partial anadromy in Oncorhynchus mykiss from Kamchatka: relevance for conservation strategies around the Pacific Rim
    • McPhee MV, Utter F, Stanford JA et al. (2007) Population structure and partial anadromy in Oncorhynchus mykiss from Kamchatka: relevance for conservation strategies around the Pacific Rim. Ecology of Freshwater Fish, 16, 539-547.
    • (2007) Ecology of Freshwater Fish , vol.16 , pp. 539-547
    • McPhee, M.V.1    Utter, F.2    Stanford, J.A.3
  • 22
    • 3242723429 scopus 로고    scopus 로고
    • A distinctive microsatellite locus that differentiates ocean-type from stream-type Chinook salmon in the interior Columbia River basin
    • Narum SR, Powell MS, Talbot AJ (2004) A distinctive microsatellite locus that differentiates ocean-type from stream-type Chinook salmon in the interior Columbia River basin. Transactions of the American Fisheries Society, 133, 1051-1055.
    • (2004) Transactions of the American Fisheries Society , vol.133 , pp. 1051-1055
    • Narum, S.R.1    Powell, M.S.2    Talbot, A.J.3
  • 23
    • 47649120138 scopus 로고    scopus 로고
    • Differentiating salmon populations at broad and fine geographical scales with microsatellites and single nucleotide polymorphisms
    • Narum SR, Banks M, Beacham TD et al. (2008) Differentiating salmon populations at broad and fine geographical scales with microsatellites and single nucleotide polymorphisms. Molecular Ecology, 17, 3464-3477.
    • (2008) Molecular Ecology , vol.17 , pp. 3464-3477
    • Narum, S.R.1    Banks, M.2    Beacham, T.D.3
  • 24
    • 0018147653 scopus 로고
    • Estimation of average heterozygosity and genetic distance from a small number of individuals
    • Nei M (1978) Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics, 89, 583-590.
    • (1978) Genetics , vol.89 , pp. 583-590
    • Nei, M.1
  • 25
    • 41349118678 scopus 로고    scopus 로고
    • Endangered and threatened species: final listing determinations for 10 distinct population segments of West Coast Steelhead
    • NOAA-National Oceanographic and Atmospheric Administration .,
    • NOAA-National Oceanographic and Atmospheric Administration (2006) Endangered and threatened species: final listing determinations for 10 distinct population segments of West Coast Steelhead. US Federal Register 71, 833-862.
    • (2006) US Federal Register , vol.71 , pp. 833-862
  • 26
    • 0035011120 scopus 로고    scopus 로고
    • First documented case of anadromy in a population of introduced rainbow trout in Patagonia, Argentina
    • Pascual M, Bentzen P, Rossi CR et al. (2001) First documented case of anadromy in a population of introduced rainbow trout in Patagonia, Argentina. Transactions of the American Fisheries Society, 130, 53-67.
    • (2001) Transactions of the American Fisheries Society , vol.130 , pp. 53-67
    • Pascual, M.1    Bentzen, P.2    Rossi, C.R.3
  • 27
    • 35448968277 scopus 로고    scopus 로고
    • Population genetics of steelhead (Oncorhynchus mykiss) in the Klamath River
    • Pearse DE, Donohoe CJ, Garza JC (2007) Population genetics of steelhead (Oncorhynchus mykiss) in the Klamath River. Environmental Biology of Fishes, 80, 377-387.
    • (2007) Environmental Biology of Fishes , vol.80 , pp. 377-387
    • Pearse, D.E.1    Donohoe, C.J.2    Garza, J.C.3
  • 28
    • 69249205500 scopus 로고    scopus 로고
    • Over the falls? Rapid evolution of ecotypic differentiation in steelhead/rainbow trout (Oncorhynchus mykiss)
    • Pearse DE, Hayes SA, Bond MH et al. (2009) Over the falls? Rapid evolution of ecotypic differentiation in steelhead/rainbow trout (Oncorhynchus mykiss) Journal of Heredity, 100, 515-525.
    • (2009) Journal of Heredity , vol.100 , pp. 515-525
    • Pearse, D.E.1    Hayes, S.A.2    Bond, M.H.3
  • 29
    • 58049215494 scopus 로고    scopus 로고
    • A second generation genetic map for rainbow trout (Oncorhynchus mykiss)
    • 9, doi:10.1186/1471-2156-9-74.
    • Rexroad CE, Palti Y, Gahr SA, Vallejo RL (2008) A second generation genetic map for rainbow trout (Oncorhynchus mykiss). BMC Genetics, 9, doi:10.1186/1471-2156-9-74.
    • (2008) BMC Genetics
    • Rexroad, C.E.1    Palti, Y.2    Gahr, S.A.3    Vallejo, R.L.4
  • 30
    • 36849080837 scopus 로고    scopus 로고
    • GENEPOP '007: a complete re-implementation of the GENEPOP software for Windows and Linux
    • Rousset F (2008) GENEPOP '007: a complete re-implementation of the GENEPOP software for Windows and Linux. Molecular Ecology Resources, 8, 103-106.
    • (2008) Molecular Ecology Resources , vol.8 , pp. 103-106
    • Rousset, F.1
  • 31
    • 0033990048 scopus 로고    scopus 로고
    • Bioinformatics Methods and Protocols: Methods in Molecular Biology
    • In: (eds Krawetz S & Misener S) Humana Press, Totowa, NJ.
    • Rozen S, Skaletsky HJ (2000) Primer3 on the WWW for general users and for biologist programmers. In: Bioinformatics Methods and Protocols: Methods in Molecular Biology (eds Krawetz S & Misener S), pp. 365-386. Humana Press, Totowa, NJ.
    • (2000) Primer3 on the WWW for general users and for biologist programmers , pp. 365-386
    • Rozen, S.1    Skaletsky, H.J.2
  • 32
    • 0035865322 scopus 로고    scopus 로고
    • A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms
    • Sachidanandam R, Weissman D, Schmidt SC et al. (2001) A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms. Nature, 409, 928-933.
    • (2001) Nature , vol.409 , pp. 928-933
    • Sachidanandam, R.1    Weissman, D.2    Schmidt, S.C.3
  • 33
    • 38049125551 scopus 로고    scopus 로고
    • Development of a standardized DNA database for Chinook salmon
    • Seeb LW, Antonovich A, Banks MA et al. (2007) Development of a standardized DNA database for Chinook salmon. Fisheries, 32, 540-552.
    • (2007) Fisheries , vol.32 , pp. 540-552
    • Seeb, L.W.1    Antonovich, A.2    Banks, M.A.3
  • 34
    • 0002283527 scopus 로고
    • The life histories of the steelhead rainbow trout (Salmo gairdneri gairdneri) and silver salmon (Oncorhynchus kisutch) with special reference to Waddell Creek, California, and recommendations regarding their management
    • Shapovalov LEO, Taft AC (1954) The life histories of the steelhead rainbow trout (Salmo gairdneri gairdneri) and silver salmon (Oncorhynchus kisutch) with special reference to Waddell Creek, California, and recommendations regarding their management. California Department of Fish and Game Fish Bulletin, 98, 5-375.
    • (1954) California Department of Fish and Game Fish Bulletin , vol.98 , pp. 5-375
    • Shapovalov, L.E.O.1    Taft, A.C.2
  • 35
    • 33646177325 scopus 로고    scopus 로고
    • Use of sequence data from rainbow trout and Atlantic salmon for SNP detection in Pacific salmon
    • Smith CT, Elfstrom CM, Seeb LW, Seeb JE (2005) Use of sequence data from rainbow trout and Atlantic salmon for SNP detection in Pacific salmon. Molecular Ecology, 14, 4193-4203.
    • (2005) Molecular Ecology , vol.14 , pp. 4193-4203
    • Smith, C.T.1    Elfstrom, C.M.2    Seeb, L.W.3    Seeb, J.E.4
  • 36
    • 0035983148 scopus 로고    scopus 로고
    • A review on SNP and other types of molecular markers and their use in animal genetics
    • Vignal A, Milan D, SanCristobal M, Eggen A (2002) A review on SNP and other types of molecular markers and their use in animal genetics. Genetics Selection Evolution, 34, 275-305.
    • (2002) Genetics Selection Evolution , vol.34 , pp. 275-305
    • Vignal, A.1    Milan, D.2    SanCristobal, M.3    Eggen, A.4
  • 37
    • 0032524383 scopus 로고    scopus 로고
    • Large-scale identification, mapping, and genotyping of single-nucleotide polymorphisms in the human genome
    • Wang DG, Fan JB, Siao CJ et al. (1998) Large-scale identification, mapping, and genotyping of single-nucleotide polymorphisms in the human genome. Science, 280, 1077-1082.
    • (1998) Science , vol.280 , pp. 1077-1082
    • Wang, D.G.1    Fan, J.B.2    Siao, C.J.3
  • 38
    • 0021566877 scopus 로고
    • Estimating F-statistics for the analysis of population structure
    • Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution, 38, 1358-1370.
    • (1984) Evolution , vol.38 , pp. 1358-1370
    • Weir, B.S.1    Cockerham, C.C.2
  • 39
    • 0035047177 scopus 로고    scopus 로고
    • Genetic characterization of hybridization and introgression between anadromous rainbow trout (Oncorhynchus mykiss irideus) and coastal cutthroat trout (O. clarki clarki)
    • Young WP, Ostberg CO, Keim P, Thorgaard GH (2001) Genetic characterization of hybridization and introgression between anadromous rainbow trout (Oncorhynchus mykiss irideus) and coastal cutthroat trout (O. clarki clarki). Molecular Ecology, 10, 921-930.
    • (2001) Molecular Ecology , vol.10 , pp. 921-930
    • Young, W.P.1    Ostberg, C.O.2    Keim, P.3    Thorgaard, G.H.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.