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Volumn 11, Issue SUPPL. 1, 2011, Pages 20-30

Development of 54 novel single-nucleotide polymorphism (SNP) assays for sockeye and coho salmon and assessment of available SNPs to differentiate stocks within the Columbia River

Author keywords

Coho; Oncorhynchus kisutch; Oncorhynchus nerka; Single nucleotide polymorphism; Sockeye; Taqman

Indexed keywords

PRIMER DNA;

EID: 79951729226     PISSN: 1755098X     EISSN: 17550998     Source Type: Journal    
DOI: 10.1111/j.1755-0998.2011.02977.x     Document Type: Article
Times cited : (24)

References (28)
  • 1
    • 18644369220 scopus 로고
    • Fish Physiology
    • In: (eds Hoar WS & Randall DJ), Vol VIII Academic Press, New York NY.
    • Allendorf FW, Utter FM (1979) Population genetics. In: Fish Physiology (eds Hoar WS & Randall DJ), Vol VIII, pp. 407-454. Academic Press, New York NY.
    • (1979) Population genetics , pp. 407-454
    • Allendorf, F.W.1    Utter, F.M.2
  • 2
    • 33646199882 scopus 로고    scopus 로고
    • The power of single-nucleotide polymorphisms for large scale parentage inference
    • Anderson E, Garza JC (2006) The power of single-nucleotide polymorphisms for large scale parentage inference. Genetics, 172, 2567-2582.
    • (2006) Genetics , vol.172 , pp. 2567-2582
    • Anderson, E.1    Garza, J.C.2
  • 4
    • 0003576389 scopus 로고    scopus 로고
    • GENETIX 4.05, logiciel sous WindowsTM pour la génétique des Populations
    • Laboratoire Génome, Populations, Interactions, CNRS UMR 5171, Université de Montpellier II, Montpellier, France.
    • Belkhir K, Borsa P, Chikhi L, Raufaste M, Bonhomme F (2004) GENETIX 4.05, logiciel sous WindowsTM pour la génétique des Populations. Laboratoire Génome, Populations, Interactions, CNRS UMR 5171, Université de Montpellier II, Montpellier, France.
    • (2004)
    • Belkhir, K.1    Borsa, P.2    Chikhi, L.3    Raufaste, M.4    Bonhomme, F.5
  • 6
    • 41349107215 scopus 로고    scopus 로고
    • Identification of novel single nucleotide polymorphisms in chinook salmon and variation among life history types
    • Campbell NR, Narum SR (2008) Identification of novel single nucleotide polymorphisms in chinook salmon and variation among life history types. Transactions of the American Fisheries Society, 137, 96-106.
    • (2008) Transactions of the American Fisheries Society , vol.137 , pp. 96-106
    • Campbell, N.R.1    Narum, S.R.2
  • 7
    • 58949087260 scopus 로고    scopus 로고
    • Characterization of 22 novel single nucleotide polymorphism markers in steelhead and rainbow trout
    • Campbell NR, Overturf K, Narum SR (2009) Characterization of 22 novel single nucleotide polymorphism markers in steelhead and rainbow trout. Molecular Ecology Resources, 9, 318-322.
    • (2009) Molecular Ecology Resources , vol.9 , pp. 318-322
    • Campbell, N.R.1    Overturf, K.2    Narum, S.R.3
  • 8
    • 33751324379 scopus 로고    scopus 로고
    • Thirty-two single-nucleotide polymorphism markers for highthroughput genotyping of sockeye salmon
    • Elfstrom CM, Smith CT, Seeb JE (2006) Thirty-two single-nucleotide polymorphism markers for highthroughput genotyping of sockeye salmon. Molecular Ecology Notes, 6, 1255-1259.
    • (2006) Molecular Ecology Notes , vol.6 , pp. 1255-1259
    • Elfstrom, C.M.1    Smith, C.T.2    Seeb, J.E.3
  • 9
    • 85007110786 scopus 로고    scopus 로고
    • Arlequin ver. 3.0: an integrated software package for population genetics data analysis
    • Excoffier L, Laval G, Schneider S (2005) Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online, 1, 47-50.
    • (2005) Evolutionary Bioinformatics Online , vol.1 , pp. 47-50
    • Excoffier, L.1    Laval, G.2    Schneider, S.3
  • 10
    • 34447542642 scopus 로고    scopus 로고
    • Pacific salmon extinctions: quantifying lost and remaining diversity
    • Gustafson RG, Waples RS, Myers JM et al. (2007) Pacific salmon extinctions: quantifying lost and remaining diversity. Conservation Biology, 21, 1009-1020.
    • (2007) Conservation Biology , vol.21 , pp. 1009-1020
    • Gustafson, R.G.1    Waples, R.S.2    Myers, J.M.3
  • 11
    • 79751498508 scopus 로고    scopus 로고
    • Summer-Fall distribution of stocks of immature sockeye salmon in the Bering sea as revealed by single-nucleotide polymorphisms
    • Habicht C, Seeb LW, Myers KW, Farley E, Seeb JE (2010) Summer-Fall distribution of stocks of immature sockeye salmon in the Bering sea as revealed by single-nucleotide polymorphisms. Transactions of the American Fisheries Society, 139, 1171-1191.
    • (2010) Transactions of the American Fisheries Society , vol.139 , pp. 1171-1191
    • Habicht, C.1    Seeb, L.W.2    Myers, K.W.3    Farley, E.4    Seeb, J.E.5
  • 12
    • 36549021060 scopus 로고    scopus 로고
    • Genome wide in situ capture for selective resequencing
    • Hodges E, Xuan Z, Balija V et al. (2007) Genome wide in situ capture for selective resequencing. Nature Genetics, 39, 1522-1527.
    • (2007) Nature Genetics , vol.39 , pp. 1522-1527
    • Hodges, E.1    Xuan, Z.2    Balija, V.3
  • 13
    • 79951765890 scopus 로고    scopus 로고
    • Single nucleotide polymorphisms identified in sockeye salmon. Report to Northern Endowment Fund, Project NF 2006 I 4.
    • Miller KM, Beacham TD (2007) Single nucleotide polymorphisms identified in sockeye salmon. Report to Northern Endowment Fund, Project NF 2006 I 4.
    • (2007)
    • Miller, K.M.1    Beacham, T.D.2
  • 14
    • 1642271573 scopus 로고    scopus 로고
    • SNP-Workshop-Group SNPs in ecology, evolution and conservation. Trends in Ecology & Evolutiond,
    • Morin PA, Luikart G, Wayne RK, SNP-Workshop-Group (2004) SNPs in ecology, evolution and conservation. Trends in Ecology & Evolutiond, 19, 208-216.
    • (2004) , vol.19 , pp. 208-216
    • Morin, P.A.1    Luikart, G.2    Wayne, R.K.3
  • 16
    • 79951729280 scopus 로고    scopus 로고
    • Snake river sockeye salmon captive broodstock program research element: annual progress report. Idaho Department of Fish and Game, Document ID# P109483.
    • Peterson M, Plaster K, Redfield L, Heindel J, Kline P (2008) Snake river sockeye salmon captive broodstock program research element: annual progress report. Idaho Department of Fish and Game, Document ID# P109483.
    • (2008)
    • Peterson, M.1    Plaster, K.2    Redfield, L.3    Heindel, J.4    Kline, P.5
  • 17
    • 0000262278 scopus 로고
    • GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism
    • Raymond M, Rousset F (1995) GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. Journal of Heredity, 86, 248-249.
    • (1995) Journal of Heredity , vol.86 , pp. 248-249
    • Raymond, M.1    Rousset, F.2
  • 18
    • 71949101266 scopus 로고    scopus 로고
    • Single nucleotide polymorphism discovery in rainbow trout by deep sequencing of a reduced representation library
    • Sanchez CC, Smith TPL, Wiedmann RT et al. (2009) Single nucleotide polymorphism discovery in rainbow trout by deep sequencing of a reduced representation library. BMC Genomics, 10, 559-567.
    • (2009) BMC Genomics , vol.10 , pp. 559-567
    • Sanchez, C.C.1    Smith, T.P.L.2    Wiedmann, R.T.3
  • 19
    • 79951758510 scopus 로고    scopus 로고
    • Transcriptome sequencing and high-resolution melt analysis advance SNP discovery in duplicated salmonids
    • in press) ., Doi:
    • Seeb JE, Pascal CE, Grau ED et al. (in press) Transcriptome sequencing and high-resolution melt analysis advance SNP discovery in duplicated salmonids. Molecular Ecology Resources, Doi: .
    • Molecular Ecology Resources
    • Seeb, J.E.1    Pascal, C.E.2    Grau, E.D.3
  • 20
    • 33646177325 scopus 로고    scopus 로고
    • Use of sequence data from rainbow trout and Atlantic salmon for SNP detection in Pacific salmon
    • Smith CT, Elfstrom CM, Seeb LW, Seeb JE (2005a) Use of sequence data from rainbow trout and Atlantic salmon for SNP detection in Pacific salmon. Molecular Ecology, 14, 4193-4203.
    • (2005) Molecular Ecology , vol.14 , pp. 4193-4203
    • Smith, C.T.1    Elfstrom, C.M.2    Seeb, L.W.3    Seeb, J.E.4
  • 22
    • 20144371461 scopus 로고    scopus 로고
    • Characterization of 13 single nucleotide polymorphism markers for chum salmon
    • Smith CT, Baker J, Park L et al. (2005c) Characterization of 13 single nucleotide polymorphism markers for chum salmon. Molecular Ecology Resources, 5, 259-262.
    • (2005) Molecular Ecology Resources , vol.5 , pp. 259-262
    • Smith, C.T.1    Baker, J.2    Park, L.3
  • 24
    • 0242691208 scopus 로고    scopus 로고
    • A comparison of Bayesian methods for haplotype reconstruction from population genotype data
    • Stephens M, Donnelly P (2003) A comparison of Bayesian methods for haplotype reconstruction from population genotype data. The American Journal of Human Genetics, 73, 1162-1169.
    • (2003) The American Journal of Human Genetics , vol.73 , pp. 1162-1169
    • Stephens, M.1    Donnelly, P.2
  • 25
    • 0029666825 scopus 로고    scopus 로고
    • Molecular genetic evidence for parallel life-history evolution within a Pacific salmon (Sockeye salmon and kokanee, Oncorhynchus nerka)
    • Taylor EB, Foote CJ, Wood CC (1996) Molecular genetic evidence for parallel life-history evolution within a Pacific salmon (Sockeye salmon and kokanee, Oncorhynchus nerka). Evolution, 50, 401-416.
    • (1996) Evolution , vol.50 , pp. 401-416
    • Taylor, E.B.1    Foote, C.J.2    Wood, C.C.3
  • 26
    • 84959820724 scopus 로고
    • Genetic variability and relationships in Pacific salmon and related trout based on protein variations
    • Utter FM, Allendorf FW, Hodgens HO (1973) Genetic variability and relationships in Pacific salmon and related trout based on protein variations. Systemic Zoology, 22, 257-270.
    • (1973) Systemic Zoology , vol.22 , pp. 257-270
    • Utter, F.M.1    Allendorf, F.W.2    Hodgens, H.O.3
  • 27
    • 34147100128 scopus 로고    scopus 로고
    • Genetic analyses provide insight into the early ocean stock distribution and survival of juvenile coho salmon off the coasts of Washington and Oregon
    • Van Doornik DM, Teel DJ, Kuligowski DR, Morgan CA, Casillas E (2007) Genetic analyses provide insight into the early ocean stock distribution and survival of juvenile coho salmon off the coasts of Washington and Oregon. North American Journal of Fisheries Management, 27, 220-237.
    • (2007) North American Journal of Fisheries Management , vol.27 , pp. 220-237
    • Van Doornik, D.M.1    Teel, D.J.2    Kuligowski, D.R.3    Morgan, C.A.4    Casillas, E.5
  • 28
    • 0030458847 scopus 로고    scopus 로고
    • Allozyme variability of Oncorhynchus nerka in the Pacific northwest, with special consideration to populations of Redfish lake, Idaho
    • Winans GA, Aebersold PB, Waples RS (1996) Allozyme variability of Oncorhynchus nerka in the Pacific northwest, with special consideration to populations of Redfish lake, Idaho. Transactions of the American Fisheries Society, 125, 645-663.
    • (1996) Transactions of the American Fisheries Society , vol.125 , pp. 645-663
    • Winans, G.A.1    Aebersold, P.B.2    Waples, R.S.3


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