Comparative molecular and morphological phylogenetic analyses of taxa in the Chaetocerotaceae (Bacillariophyta)

Phycologia

Volumn 49, Issue 5, 2010, Pages 471-500

  Kooistra, Wiebe H C F ^a   Sarno, Diana ^a   Hernández Becerril, David U ^b   Assmy, Philipp ^c,d   Di Prisco, Carmen ^a   Montresor, Marina ^a  

^a STAZIONE ZOOLOGICA ANTON DOHRN   (Italy)

^b UNIVERSIDAD NACIONAL AUTÓNOMA DE MÉXICO   (Mexico)

^c ALFRED WEGENER INSTITUTE FOR POLAR AND MARINE RESEARCH   (Germany)

^d UNIVERSITY OF BREMEN   (Germany)

Author keywords

Bacteriastrum; Chaetoceros; Cladistics; LSU rRNA gene; Morphology; Phylogeny

Indexed keywords

BACILLARIOPHYTA; BACTERIASTRUM; CHAETOCEROS; CHAETOCEROS (PHAEOCEROS); CHAETOCEROS CURVISETUS; CHAETOCEROS DEBILIS; CHAETOCEROS DIADEMA; CHAETOCEROS LORENZIANUS; CHAETOCEROS PERUVIANUS; CHAETOCEROS SOCIALIS; CHAETOCEROTACEAE; HEMIAULUS HAUCKII; HYALOCHAETE;

EID: 79951703487     PISSN: 00318884     EISSN: None     Source Type: Journal    
DOI: 10.2216/09-59.1     Document Type: Article

References (57)

1. Alverson A.J. 2008. Molecular systematics and the diatom species. Protist 159: 339-353.
2. Alverson A.J., Cannone J.J., Gutell R.R. & Theriot E.C. 2006. The evolution of elongate shape in diatoms. Journal of Phycology 41: 655-668. (Pubitemid 43810111)
3. Amato A., Kooistra W.H.C.F., Levialdi Ghiron J.H., Mann D.G., Pröschold T. & Montresor M. 2007. Reproductive isolation among sympatric cryptic species in marine diatoms. Protist 158: 193-207. (Pubitemid 46467505)
4. Assmy P., HernÁndez-Becerril D.U. & Montresor M. 2008. Morphological variability and life cycle traits of the type species of the diatom genus Chaetoceros, C. dichaeta. Journal of Phycology 44: 152-163. (Pubitemid 351225089)
5. Behnke A., Friedl T., Chepurnov V.A. & Mann D.G. 2004. Reproductive compatibility and rDNA sequence analyses in the Sellaphora pupula species complex (Bacillariophyta). Journal of Phycology 40: 193-208. (Pubitemid 38241650)
6. Beszteri B., John U. & Medlin L.K. 2007. An assessment of cryptic genetic diversity within the Cyclotella meneghiniana species complex (Bacillariophyta) based on nuclear and plastid genes, and amplified fragment length polymorphisms. European Journal of Phycology 42: 47-60.
7. Brunel J. 1966. Normalisation de la terminologie des soies dans le genre Chaetoceros. Naturaliste Canadien 93: 849-860.
8. Cupp E.E. 1943. Marine plankton diatoms of the west coast of North America. Bulletin of the Scripps Institution of Oceanography 5: 1-238.
9. Drebes G. 1972. The life history of the centric diatom Bacteriastrum hyalinum Lauder. Nova Hedwigia Beiheft 39: 95-110.
10. Evans K.M., Wortley A.H., Simpson G.E., Chepurnov V.A. & Mann D.G. 2008. A molecular systematic approach to explore diversity within the Sellaphora pupula species complex (Bacillariophyta). Journal of Phycology 44: 215-231. (Pubitemid 351225110)
11. Evensen D.L. & Hasle G.R. 1975. The morphology of some Chaetoceros (Bacillariophyceae) species as seen in the electron microscopes. Nova Hedwigia Beiheft 53: 153-174.
12. Ferrario M.E., HernÁndez-Becerril D.U. & Garibotti I. 2004. Morphological study of the marine planktonic diatom Chaetoceros castracanei Karsten (Bacillariophyceae) from Antarctic waters, with a discussion on its possible taxonomic relationships. Botanica Marina 47: 349-355. (Pubitemid 39320542)
13. Fryxell G.A. & Hasle G.R. 2003. Taxonomy of harmful diatoms. in: Manual on harmful marine microalgae (Ed. by G.M. Hallegraeff, D.M. Anderson & A.D. Cembella), pp. 465-509. UNESCO, Paris.
14. Gran H.H. 1897. Protophyta: Diatomaceae, Silicoflagellata and Cilioflagellata. Christiania. Den Norske Nordhavs-Expedition 1876-78, Hefte 24.
15. Gran H.H. 1908. XIX. Diatomeen. In: Nordisches Plankton Botanischer Teil: X1X:1-146 (Ed. by K. Brandt & C. Apstein), Neudruck A. Asher & Co., Amsterdam.
16. Hargraves P.E. 1979. Studies on marine plankton Diatoms. IV. Morphology of Chaetoceros resting spores. Nova Hedwigia Beiheft 64: 99-120.
17. Hasle G.R. & Syvertsen E.E. 1997. Marine diatoms. In: Identifying marine phytoplankton (Ed. by C.R. Tomas), pp. 5-385. Academic press, san Diego.
18. Hendey N.I. 1964. An introductory account of the smaller algae of British coastal waters. Part. V. Bacillariophyceae. Fisheries investigation, series iv. London.
19. HernÁndez-Becerril D.U. 1991. Note on the morphology of Chaetoceros didymus and C. protuberans, with some considerations on their taxonomy. Diatom Research 6: 289-297.
20. HernÁndez-Becerril D.U. 1992. Two new species of the diatom genus Chaetoceros (Bacillariophyta). Plant Systematics and Evolution 181: 217-226.
21. HernÁndez-Becerril D.U. 1993a. Note on the morphology of two planktonic Chaetoceros species: C. bacteriastroides and C. seychellarus, with comments on their taxonomy and distribution. Botanical Journal of the Linnean Society 111: 117-128.
22. HernÁndez-Becerril D.U. 1993b. Study of the morphology and distribution of two planktonic diatom: Chaetoceros paradoxus and C. filiferus (Bacillariophyceae). Cryptogamic Botany 3: 169-175.
23. HernÁndez-Becerril D.U. 1996. A morphological study of Chaetoceros species (Bacillariophyta) from the plankton of the Pacific Ocean of Mexico. Bulletin of the Natural History Museum, London (Botany) 26: 1-73.
24. HernÁndez-Becerril D.U. 1999. Chaetoceros sumatranus,a member of Chaetoceros section Coarctati, sect. nov. (Bacillariophyceae). Cryptogamie, Algologie 20: 95-104.
25. HernÁndez-Becerril D.U. & Flores Granados C. 1998. species of the diatom genus Chaetoceros (Bacillariophyceae) in the plankton from the southern Gulf of Mexico. Botanica Marina 41: 505-519. (Pubitemid 28453493)
26. Hillis D.M. & Huelsenbeck J.P. 1992. Signal, noise, and reliability in molecular phylogenetic analyses. Journal of Heredity 83: 189-195. (Pubitemid 23097535)
27. Jensen K.G. & Moestrup Ø. 1998. The genus Chaetoceros (Bacillariophyceae) in inner Danish coastal waters. Opera Botanica 133: 1-68.
28. KOOISTRA W.H.C.F., Sarno D., Balzano S., Gu H., Andersen R.A. & Zingone A. 2008. Global diversity and biogeography of Skeletonema species (Bacillariophyta). Protist 159: 177-193. (Pubitemid 351406512)
29. Lundholm N., Moestrup Ø., Kotaki Y., Hoef-Emden K., Scholin C. & Miller P. 2006. Inter- and intraspecific variation of the Pseudo-nitzschia delicatissima complex (Bacillariophyceae) illustrated by rRNA probes, morphological data and phylogenetic analyses. Journal of Phycology 42: 464-481.
30. Maddison W.P. & Maddison D.R. 1997. MacClade: Analysis of phylogeny and character evolution version 3.07. Sinauer Associates, Sunderland, MA.
31. Marino D., Montresor M. & Zingone A. 1987. Miraltia throndsenii gen. nov., sp. nov., a planktonic diatom from the Gulf of Naples. Diatom Research 2: 205-211.
32. Marino D., GiuffrÉ G., Montresor M. & Zingone A. 1991. An electron microscope investigation on Chaetoceros minimus (Levander) comb. nov. and new observations on C. throndsenii (Marino, Montresor and Zingone) comb. nov. Diatom Research 6: 317-326.
33. Medlin L.K., Sato S., Mann D.G. & Kooistra W.C.H.F. 2008. Molecular evidence confirms sister relationship of Ardissonea, Climacosphenia and Toxarium within the bipolar centric diatoms Bacillariophyta, Mediophyceae, and cladistic analyses confirm that extremely elongated shape has arisen twice in the diatoms. Journal of Phycology 44: 1340-1348.
34. Montresor M., Sgrosso S., Procaccini G. & Kooistra W.H.C.F. 2003. Intraspecific diversity in Scrippsiella trochoidea (Dinophyceae): evidence for cryptic species. Phycologia 42: 56-70. (Pubitemid 36333443)
35. Ostenfeld CH. 1903. Phytoplankton from the sea around the Faeroes. In: Botany of the Faeroes II (Ed. by E. Warming), pp. 558-612. Det Nordiske Forlag, Copenhagen.
36. Ostenfeld CH. 1912. A revision of the marine species of Chaetoceras Ehbg. sect. Simplicia Ostf. Meddelelser fra Kommissionen for Danmarks Fiskeri- og Havundersøgelser: serie Plankton, 1. C.A. Reitzel, Copenhagen. 11 + 24 pls pp.
37. Pavillard J. 1924. Observations sur les Diatomées, 4ème série. Le genre Bacteriastrum. Bulletin de la Société: Botanique de France 71: 1084-1090.
38. Pickett-Heaps J.D. 1998a. Cell division and morphogenesis of the centric diatom Chaetoceros decipiens (Bacillariophyceae) I. Living cells. Journal of Phycology 34: 989-994. (Pubitemid 29032834)
39. Pickett-Heaps J.D. 1998b. Cell division and morphogenesis of the centric diatom Chaetoceros decipiens (Bacillariophyceae) II. Electron microscopy and a new paradigm for tip growth. Journal of Phycology 34: 995-1004. (Pubitemid 29032835)
40. Posada D. & Crandall K.A. 2001. Selecting the best-fit model of nucleotide substitution. Systematic Biology 50: 580-601.
41. Rampen S.W., Schouten S., Panoto F.E., Brink M., Andersen R.A., Muyzer G., Abbas B. & Sinninge-DamstÉ J.S. 2009. Phylogenetic position of Attheya longicornis and Attheya septentrionalis (Bacillariophyta). Journal of Phycology 45: 444-453.
42. Rines J.E.B. 1999. Morphology and taxonomy of Chaetoceros contortus Schütt 1895, with preliminary observations on Chaetoceros compressus Lauder 1864 (subgenus Hyalochaete, section Compressa). Botanica Marina 42: 539-551. (Pubitemid 30003378)
43. Rines J.E.B. & Hargraves P.E. 1988. The Chaetoceros Ehrenberg (Bacillariophyceae) flora of Narragansett Bay, Rhode island, U.S.A. Bibliotheca Phycologica 79: 1-196.
44. Rines J.E.B. & Hargraves P.E. 1990. Morphology and taxonomy of Chaetoceros compressus Lauder var. hirtisetus var. nova, with preliminary consideration of closely related taxa. Diatom Research 5: 113-127.
45. Rines J.E.B. & Theriot E.C. 2003. Systematics of Chaetocerotaceae (Bacillariophyceae). I. A phylogenetic analysis of the family. Phycological Research 51: 83-98. (Pubitemid 36953113)
46. Rines J.E.B., Boonruang P. & Theriot E.C. 2000. Chaetoceros phuketensis sp. nov. (Bacillariophyceae). A new species from the Andaman Sea. Phycological Research 48: 161-168.
47. Ross R., Sims P.A. & Hasle G.R. 1977. Observations on some species of the Hemiauloideae. Nova Hedwigia Beihefte 54: 179-214.
48. Round F.E., Crawford R.M. & Mann D.G. 1990. The diatoms. Biology & morphology of the genera. Cambridge University Press, Cambridge.
49. Sar E.A., HernÁndez-Becerril D.U. & Sunesen I. 2002. A morphological study of Chaetoceros tenuissimus Meunier, a little- known planktonic diatom, with a discussion of the section Simplicia, subgenus Hyalochaete. Diatom Research 17: 327-335. (Pubitemid 35474192)
50. Sarno D., Zingone A. & Marino D. 1997. Bacteriastrum parallelum sp. nov., a new diatom from the Gulf of naples, and new observations on B. furcatum (Chaetocerotaceae, Bacillariophyta). Phycologia 36: 257-266.
51. Sarno D., Kooistra W.H.C.F., Medlin L.K., Percopo I. & Zingone A. 2005. Diversity in the genus Skeletonema (Bacillariophyceae): II. An assessment of the taxonomy of S. costatum-like species, with the description of four new species. Journal of Phycology 41: 151-176. (Pubitemid 40263635)
52. Sarno D., Kooistra W.H.C.F., Balzano S., Hargraves P.E. & Zingone A. 2007. Diversity in the genus Skeletonema (Bacillariophyceae): III. Phylogenetic position and morphological variability of Skeletonema costatum and Skeletonema grevillei, with the description of Skeletonema ardens sp. nov. Journal of Phycology 43: 156-170. (Pubitemid 46232949)
53. Smayda T.J. & Boleyn B.J. 1966. Experimental observations on the flotation of marine diatoms. III. Bacteriastrum hyalinum and Chaetoceros lauderi. Limnology and Oceanography 11: 35-44.
54. Smetacek V. 1985. Role of sinking in diatom life-history cycles: ecological, evolutionary and geological significance. Marine Biology 84: 239-251.
55. Swofford D.L. 2002. PAUP*, Phylogenetic Analysis Using Parsimony (*and other methods) version 4. Sinauer Associates, Sunderland, MA.
56. Vanormelingen P., Chepurnov V.A., Mann D.G., Sabbe K. & Vyverman W. 2008. Genetic divergence and reproductive barriers among morphologically heterogeneous sympatric clones of Eunotia bilunaris sensu lato (Bacillariophyta). Protist 159: 73-90. (Pubitemid 350213526)
57. Verity P.G. & Smetacek V. 1996. Organism life cycles, predation, and the structure of marine pelagic ecosystems. Marine Ecology Progress Series 130: 277-293.