Segmentation of dense 2D bacilli populations

Proceedings - 2010 Digital Image Computing: Techniques and Applications, DICTA 2010

Volumn , Issue , 2010, Pages 82-86

  Vallotton, Pascal ^a   Turnbull, Lynne ^b   Whitchurch, Cynthia ^b   Mililli, Lisa ^c  

^a CSIRO   (Australia)

^b UNIVERSITY OF TECHNOLOGY SYDNEY   (Australia)

^c MONASH UNIVERSITY   (Australia)

Author keywords

Bacteria; Bayesian; Image analysis; Motility; Phenotype; Probability; Segmentation

Indexed keywords

2-D SYSTEMS; BAYESIAN; HIGH RESOLUTION; IMAGE FEATURES; MOTILITY; PHASE-CONTRAST IMAGE; PHENOTYPE; PROBABILISTIC MODELS; SEGMENTATION; TEST IMAGES;

BACILLI; BACTERIOLOGY; BAYESIAN NETWORKS; BIOLOGY; IMAGE ANALYSIS; VIRUSES;

IMAGE SEGMENTATION;

EID: 79951599221     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/DICTA.2010.23     Document Type: Conference Paper

References (16)

1. C. L. Woldringh, Is Escherichia coli getting old? Bioessays, vol. 27, pp. 770-774, Aug 2005. (Pubitemid 41297399)
2. A. B. Semmler, C. B. Whitchurch, and J. S. Mattick, A re-examination of twitching motility in Pseudomonas aeruginosa Microbiology, vol. 145, pp. 2863-73, 1999.
3. Q. L. Wang, J. Niemi, C. M. Tan, L. C. You, and M. West, Image Segmentation and Dynamic Lineage Analysis in Single-Cell Fluorescence Microscopy, Cytometry Part A, vol. 77A, pp. 101-110, Jan.
4. J. Xie, S. Khan, and M. Shan, Automatic Tracking of Escherichia Coli in Phase-Contrast Microscopy Video, IEEE Transactions on Biomedical Engineering, vol. 56, pp. 390-399, Feb 2009.
5. K. Hoshi and R. Shingai, Computer-driven automatic identification of locomotion states in Caenorhabditis elegans, Journal of Neuroscience Methods, vol. 157, pp. 355-363, Oct 2006. (Pubitemid 44331975)
6. E. B. Steager, C. B. Kim, and M. J. Kim, Dynamics of pattern formation in bacterial swarms, Physics of Fluids, vol. 20, p. 5, Jul 2008.
7. P. Vallotton, C. Sun, D. Wang, P. Ranganathan, L. Turnbull, and C. Whitchurch, Segmentation and tracking of individual Pseudomonas aeruginosa bacteria in dense populations of motile cells. In Image and Vision Computing New Zealand (IVCNZ) Wellington, New Zealand, 2009.
8. R. Kimmel and A. M. Bruckstein, Regularized Laplacian zero crossings as optimal edge integrators, International Journal of Computer Vision, vol. 53, pp. 225-243, Jul-Aug 2003.
9. P. Soille, Morphological Image Analysis, 2 ed, Springer, 2004.
10. L. L. Burrows, Weapons of mass retraction, Mol Microbiol. vol. 57, pp. 878-88. 2005. (Pubitemid 41139853)
11. S. Ross, Introduction to Probability Models: Academic Press, 2006.
12. E. Ben-Jacob, Learning from bacteria about natural information processing, Ann N Y Acad Sci., vol. 1178, pp. 78-90. 2009.
13. N. Chia, C. R. Woese, and N. Goldenfeld, A collective mechanism for phase variation in biofilms, Proc. Natl. Acad. Sci. U S A. vol. 105, pp. 14597-602. Epub 2008 Sep 17. 2008.
14. G. Ebersbach and C. Jacobs-Wagner, Exploration into the spatial and temporal mechanisms of bacterial polarity, Trends Microbiol. vol. 15, pp. 101-8. Epub 2007 Feb 1, 2007. (Pubitemid 46356980)
15. O. A. Igoshin, A. Mogilner, R. D. Welch, D. Kaiser, and G. Oster, Pattern formation and traveling waves in myxobacteria: theory and modeling, Proc. Natl. Acad. Sci. U S A., vol. 98, pp. 14913-8. 2001. (Pubitemid 34013944)
16. W. Margolin, Sculpting the bacterial cell, Curr Biol., vol. 19, pp. R812-22. 2009.