Effects of single nucleotide changes on the binding and activity of RNA aptamers to human papillomavirus 16 E7 oncoprotein

Biochemical and Biophysical Research Communications

Volumn 405, Issue 3, 2011, Pages 417-421

  Nicol, Clare ^a   Bunka, David H J ^a   Blair, G Eric ^a   Stonehouse, Nicola J ^a  

^a UNIVERSITY OF LEEDS   (United Kingdom)

Author keywords

HPV16 E7; RNA aptamer; SELEX

Indexed keywords

PEPTIDE APTAMER; PROTEIN E7; SINGLE STRANDED RNA;

ARTICLE; BINDING AFFINITY; CONTROLLED STUDY; HUMAN; HUMAN CELL; HUMAN PAPILLOMAVIRUS TYPE 16; IN VITRO STUDY; MOLECULAR EVOLUTION; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN FUNCTION; PROTEIN INTERACTION; SINGLE NUCLEOTIDE POLYMORPHISM;

APTAMERS, NUCLEOTIDE; BASE SEQUENCE; DIRECTED MOLECULAR EVOLUTION; HUMAN PAPILLOMAVIRUS 16; HUMANS; MOLECULAR SEQUENCE DATA; NUCLEOTIDES; PAPILLOMAVIRUS E7 PROTEINS; SELECTION, GENETIC; SELEX APTAMER TECHNIQUE;

HUMAN PAPILLOMAVIRUS - 16; HUMAN PAPILLOMAVIRUS TYPE 16;

EID: 79951578013     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2011.01.044     Document Type: Article

References (19)

1. Bernard H.-U., Burk R.D., Chen Z., van Doorslaer K., Hausen H.z., de Villiers E.-M. Classification of papillomaviruses (PVs) based on 189 PV types and proposal of taxonomic amendments. Virology 2010, 401:70-79.
2. de Villiers E.-M., Fauquet C., Broker T.R., Bernard H.-U., zur Hausen H. Classification of papillomaviruses. Virology 2004, 324:17-27.
3. de Sanjose S., Quint W.G.V., Alemany L., Geraets D.T., Klaustermeier J.E., Lloveras B., Tous S., Felix A., Bravo L.E., Shin H.-R., et al. Human papillomavirus genotype attribution in invasive cervical cancer: a retrospective cross-sectional worldwide study. The Lancet Oncology 2010, 11:1048-1056.
4. Doorbar J. Molecular biology of human papillomavirus infection and cervical cancer. Clinical Science 2006, 110:525-541.
5. Hermann T., Patel D.J. Adaptive recognition by nucleic acid aptamers. Science 2000, 287:820-825.
6. Ellington A.D., Szostak J.W. In vitro selection of RNA molecules that bind specific ligands. Nature 1990, 346:818-822.
7. Robertson D.L., Joyce G.F. Selection in vitro of an RNA enzyme that specifically cleaves single-stranded DNA. Nature 1990, 344:467-468.
8. Tuerk C., Gold L. Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science 1990, 249:505-510.
9. James W. Aptamers in the virologists' toolkit. The Journal of General Virology 2007, 88:351-364.
10. Ellingham M., Bunka D.H.J., Rowlands D.J., Stonehouse N.J. Selection and characterization of RNA aptamers to the RNA-dependent RNA polymerase from foot-and-mouth disease virus. RNA 2006, 12:1970-1979.
11. Robinson M.A., Wood J.P.A., Capaldi S.A., Baron A.J., Gell C., Smith D.A., Stonehouse N.J. Affinity of molecular interactions in the bacteriophage phi29 DNA packaging motor. Nucleic Acids Research 2006, 34:2698-2709.
12. Liu X., Clements A., Zhao K., Marmorstein R. Structure of the human Papillomavirus E7 oncoprotein and its mechanism for inactivation of the retinoblastoma tumor suppressor. The Journal of Biological Chemistry 2006, 281:578-586.
13. Liu X., Marmorstein R. Structure of the retinoblastoma protein bound to adenovirus E1A reveals the molecular basis for viral oncoprotein inactivation of a tumor suppressor. Genes & Development 2007, 21:2711-2716.
14. Kim H.-Y., Ahn B.-Y., Cho Y. Structural basis for the inactivation of retinoblastoma tumor suppressor by SV40 large T antigen. The EMBO Journal 2001, 20:295-304.
15. Munakata T., Nakamura M., Liang Y., Li K., Lemon S.M. Down-regulation of the retinoblastoma tumor suppressor by the hepatitis C virus NS5B RNA-dependent RNA polymerase. Proceedings of the National Academy of Sciences of the United States of America 2005, 102:18159-18164.
16. Mayer G. The chemical biology of aptamers. Angewandte Chemie International Edition 2009, 48:2672-2689.
17. Boukamp P., Petrussevska R.T., Breitkreutz D., Hornung J., Markham A., Fusenig N.E. Normal keratinization in a spontaneously immortalized aneuploid human keratinocyte cell line. The Journal of Cell Biology 1988, 106:761-771.
18. Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Research 2003, 31:3406-3415.
19. Gardner P., Giegerich R. A comprehensive comparison of comparative RNA structure prediction approaches. BMC Bioinformatics 2004, 5:140.