Developmental transcriptome of Aplysia californica'

Journal of Experimental Zoology Part B: Molecular and Developmental Evolution

Volumn 316 B, Issue 2, 2011, Pages 113-134

  Heyland, Andreas ^a   Vue, Zer ^b   Voolstra, Christian R ^b,c   Medina, Mónica ^b   Moroz, Leonid L ^d  

^a UNIVERSITY OF GUELPH   (Canada)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c KING ABDULLAH UNIVERSITY OF SCIENCE AND TECHNOLOGY   (Saudi Arabia)

^d UNIVERSITY OF FLORIDA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

ANIMAL; APLYSIA; ARTICLE; CHEMISTRY; CLUSTER ANALYSIS; DNA MICROARRAY; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETIC TRANSCRIPTION; GENETICS; METABOLISM; METHODOLOGY; MORPHOGENESIS; PHYSIOLOGY; PRENATAL DEVELOPMENT; REPRODUCIBILITY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SIGNAL TRANSDUCTION;

ANIMALS; APLYSIA; BODY PATTERNING; CLUSTER ANALYSIS; DNA; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, DEVELOPMENTAL; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; REPRODUCIBILITY OF RESULTS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SIGNAL TRANSDUCTION; TRANSCRIPTION, GENETIC;

APLYSIA; APLYSIA CALIFORNICA; CAENORHABDITIS ELEGANS; CHORDATA; DANIO RERIO; DROSOPHILA MELANOGASTER; ECDYSOZOA; MOLLUSCA;

EID: 79951574787     PISSN: 15525007     EISSN: 15525015     Source Type: Journal    
DOI: 10.1002/jez.b.21383     Document Type: Article

References (81)

1. Addadi L, Weiner S. 1992. Control and design principles in biological mineralization. Angew Chem Int Ed Engl 31:153-169.
2. Andeol Y. 1994. Early transcription in different animal species-implication for transition from maternal to zygotic control in development. Roux's Arch Dev Biol 204:3-10.
3. Arbeitman MN, Furlong EEM, Imam F, Johnson E, Hull BH, Baker BS, Krasnov MA, Scott MP, Davis RW, White KP. 2002. Gene expression during the life cycle of Drosophila melanogaster. Science 297:2270-2275.
4. Arch S. 1972. Biosynthesis of egg-laying hormone (Elh) in bag cell neurons of Aplysia californica. J Gen Physiol 60:102-119.
5. Bendtsen JD, Jensen LJ, Blom N, Von Heijne G, Brunak S. 2004. Feature-based prediction of non-classical and leaderless protein secretion. Protein Eng Des Sel 17:349-356.
6. Blochmann F. 1883. Beitraege zur Kenntnis der Entwicklung der Gastropoden. Z Wiss Zool 38:392-410.
7. Bluthgen N, Brand K, Cajavec B, Swat M, Herzel H, Beule D. 2005. Biological profiling of gene groups utilizing gene ontology. Genome Inform 16:106-115.
8. Cai Y, Chia W, Yang X. 2001. A family of snail-related zinc finger proteins regulates two distinct and parallel mechanisms that mediate Drosophila neuroblast asymmetric divisions. EMBO J 20:1704-1714.
9. Capo TR, Bardales AT, Gillette PR, Lara MR, Schmale MC, Serafy JE. 2009. Larval growth, development, and survival of laboratory-reared Aplysia californica: effects of diet and veliger density. Comp Biochem Physiol C Toxicol Pharmacol 149:215-223.
10. Chia FS, Rice ME. 1978. Settlement and metamorphosis of marine invertebrate larvae. New York: Elsevier. 290p.
11. Chiu AY, Hunkapiller MW, Heller E, Stuart DK, Hood LE, Strumwasser F. 1979. Purification and primary structure of the neuropeptide egg-laying hormone of Aplysia californica. Proc Natl Acad Sci USA 76:6656-6660.
12. Couper JM, Leise EM. 1996. Serotonin injections induce metamorphosis in larvae of the gastropod mollusc Ilyanassa obsoleta. Biol Bull 191:178-186.
13. Davidson EH. 2001. Genomic regulatory systems: development and evolution. San Diego: Academic Press.
14. Dickinson AJG, Croll RP. 2001. Neurocalcin-like immunoreactivity in embryonic stages of Aplysia californica and Lymnaea stagnalis. Invertebr Biol 120:206-216.
15. Dickinson AJG, Croll RP, Voronezhskaya EE. 2000. Development of embryonic cells containing serotonin, catecholamines, and FMRFamide-related peptides in Aplysia californica. Biol Bull 199:305-315.
16. Diefenbach TJ, Koehncke NK, Goldberg JI. 1991. Characterization and development of rotational behavior in Helisoma Embryos-role of endogenous serotonin. J Neurobiol 22:922-934.
17. Fessler JH, Kramerova I, Kramerov A, Chen Y, Fessler LI. 2004. Papilin, a novel component of basement membranes, in relation to ADAMTS metalloproteases and ECM development. Int J Biochem Cell Biol 36:1079-1084.
18. Fiedler TJ, Hudder A, McKay SJ, Shivkumar S, Capo TR, Schmale MC, Walsh PJ. 2010. The transcriptome of the early life history stages of the California sea hare Aplysia californica. Comp Biochem Physiol Part D Genom Proteom 5:165-170.
19. Floyd PD, Li L, Rubakhin SS, Sweedler JV, Horn CC, Kupfermann I, Alexeeva VY, Ellis TA, Dembrow NC, Weiss KR, Vilim FS. 1999. Insulin prohormone processing, distribution, and relation to metabolism in Aplysia californica. J Neurosci 19:7732-7741.
20. Gerencser GA, Loo SY, Zhang J. 2003. Thyroid hormone-induced sulfate absorption in Aplysia californica gut is mediated by protein synthesis. Can J Physiol Pharmacol 81:405-408.
21. Glanzman DL. 1995. The cellular basis of classical conditioning in Aplysia californica-it's less simple than you think. Trends Neurosci 18:30-36.
22. Gotz S, Garcia-Gomez JM, Terol J, Williams TD, Nagaraj SH, Nueda MJ, Robles M, Talon M, Dopazo J, Conesa A. 2008. High-throughput functional annotation and data mining with the Blast2GO suite. Nucleic Acids Res 36:3420-3435.
23. Hall JD, Lloyd PE. 1990. Involvement of pedal peptide in locomotion in Aplysia: modulation of foot muscle contractions. J Neurobiol 21:858-868.
24. Hannemann F, Bichet A, Ewen KM, Bernhardt R. 2007. Cytochrome P450 systems-biological variations of electron transport chains. Biochim Biophys Acta 1770:330-344.
25. He J, Dai X, Zhao X. 2007. PLAN: a web platform for automating high-throughput BLAST searches and for managing and mining results. BMC Bioinform 8:53.
26. Heyland A, Moroz LL. 2005. Cross-kingdom hormonal signaling: an insight from thyroid hormone functions in marine larvae. J Exp Biol 208:4355-4361.
27. Heyland A, Moroz LL. 2006. The signaling architecture underlying metamorphic transitions across animal phyla. Integr Comp Biol 46:743-759.
28. Heyland A, Hodin J, Reitzel AM. 2005. Hormone signaling in evolution and development: a non-model system approach. Bioessays 27:64-75.
29. Heyland A, Price DA, Bodnarova M, Moroz LL. 2006. Thyroid hormone metabolism and thyroid peroxidase function in two non-chordate animals. J Exp Zool (Mol Dev Evol) 306:551-566.
30. Jackson DJ, McDougall C, Green K, Simpson F, Worheide G, Degnan BM. 2006. A rapidly evolving secretome builds and patterns a sea shell. BMC Biol 4:40.
31. Jackson DJ, Worheide G, Degnan BM. 2007. Dynamic expression of ancient and novel molluscan shell genes during ecological transitions. BMC Evol Biol 7:160.
32. Kandel ER. 1979. Behavioral biology of Aplysia: a contribution to the comparative study of opisthobranch molluscs. New York: Freeman.
33. Kandel ER, Kriegstein A, Schacher S. 1980. Development of the central nervous system of Aplysia in terms of the differentiation of its specific identifiable cells. Neuroscience 5:2033-2063.
34. Kempf SC, Page LR. 2005. Anti-tubulin labeling reveals ampullary neuron ciliary bundles in opisthobranch larvae and a new putative neural structure associated with the apical ganglion. Bio Bull 208:169-182.
35. Kriegstein AR. 1977. Development of the nervous system of Aplysia californica. Proc Natl Acad Sci USA 74:375-378.
36. Kriegstein AR, Castellucci V, Kandel ER. 1974. Metamorphosis of Aplysia californica in laboratory culture. Proc Natl Acad Sci USA 71:3654-3658.
37. Kroger N. 2009. Biochemistry. The molecular basis of nacre formation. Science 325:1351-1352.
38. Leonard JL, Edstrom JP. 2004. Parallel processing in an identified neural circuit: the Aplysia californica gill-withdrawal response model system. Biol Rev Camb Philos Soc 79:1-59.
39. Li TR, White KP. 2003. Tissue-specific gene expression and ecdysone-regulated genomic networks in Drosophila. Dev Cell 5:59-72.
40. Li L, Floyd PD, Rubakhin SS, Romanova EV, Jing J, Alexeeva VY, Dembrow NC, Weiss KR, Vilim FS, Sweedler JV. 2001. Cerebrin prohormone processing, distribution and action in Aplysia californica. J Neurochem 77:1569-1580.
41. Linder P. 2000. Quick guide: DEAD-box proteins. Curr Biol 10:R887.
42. Linder P. 2006. Dead-box proteins: a family affair: active and passive players in RNP-remodeling. Nucleic Acids Res 34:4168-4180.
43. Livingston BT, Killian CE, Wilt F, Cameron A, Landrum MJ, Ermolaeva O, Sapojnikov V, Maglott DR, Buchanan AM, Ettensohn CA. 2006. A genome-wide analysis of biomineralization-related proteins in the sea urchin Strongylocentrotus purpuratus. Dev Biol 300:335-348.
44. Mackie GO, Singla CL, Thiriot-Quievreux C. 1976. Nervous control of ciliary activity in gastropod larvae. Biol Bull 151:182-199.
45. Mann K, Weiss IM, Andre S, Gabius HJ, Fritz M. 2000. The amino-acid sequence of the abalone (Haliotis laevigata) nacre protein perlucin. Detection of a functional C-type lectin domain with galactose/mannose specificity. Eur J Biochem 267:5257-5264.
46. Marin F, Luquet G. 2004. Molluscan shell proteins. Comptes Rendus Palevol 3:469-492.
47. Marin F, Luquet G, Marie B, Medakovic D. 2008. Molluscan shell proteins: primary structure, origin, and evolution. Curr Top Dev Biol 80:209-276.
48. Marois R, Carew TJ. 1997a. Fine structure of the apical ganglion and its serotonergic cells in the larva of Aplysia californica. Biol Bull 192:388-398.
49. Marois R, Carew TJ. 1997b. Ontogeny of serotonergic neurons in Aplysia californica. J Comp Neurol 386:477-490.
50. Marois R, Carew TJ. 1997c. Projection patterns and target tissues of the serotonergic cells in larval Aplysia californica. J Comp Neurol 386:491-506.
51. Mathavan S, Lee SG, Mak A, Miller LD, Murthy KR, Govindarajan KR, Tong Y, Wu YL, Lam SH, Yang H, Ruan Y, Korzh V, Gong Z, Liu ET, Lufkin T. 2005. Transcriptome analysis of zebrafish embryogenesis using microarrays. PLoS Genet 1:260-276.
52. Melkonyan HS, Chang WC, Shapiro JP, Mahadevappa M, Fitzpatrick PA, Kiefer MC, Tomei LD, Umansky SR. 1997. SARPs: a family of secreted apoptosis-related proteins. Proc Natl Acad Sci USA 94:13636-13641.
53. Michenfelder M, Fu G, Lawrence C, Weaver JC, Wustman BA, Taranto L, Evans JS, Morse DE. 2003. Characterization of two molluscan crystal-modulating biomineralization proteins and identification of putative mineral binding domains. Biopolymers 70:522-533.
54. Miyamoto H, Miyoshi F, Kohno J. 2005. The carbonic anhydrase domain protein nacrein is expressed in the epithelial cells of the mantle and acts as a negative regulator in calcification in the mollusc Pinctada fucata. Zool Sci 22:311-315.
55. Moroz LL, Ju J, Russo JJ, Puthanveetti S, Kohn A, Medina M, Walsh PJ, Birren B, Lander ES, Kandel ER. 2004. Sequencing the Aplysia genome: a model for single cell, real-time and comparative genomics. (National Human Genome Research Institute online at .)
56. Moroz LL, Edwards JR, Puthanveettil SV, Kohn AB, Ha T, Heyland A, Knudsen B, Sahni A, Yu F, Liu L, Jezzini S, Lovell P, Iannucculli W, Chen M, Nguyen T, Sheng H, Shaw R, Kalachikov S, Panchin YV, Farmerie W, Russo JJ, Ju J, Kandel ER. 2006. Neuronal transcriptome of Aplysia: neuronal compartments and circuitry. Cell 127:1453-1467.
57. Nielsen KK, Nielsen JE, Madrid SM, Mikkelsen JD. 1997. Characterization of a new antifungal chitin-binding peptide from sugar beet leaves. Plant Physiol 113:83-91.
58. Page LR. 2002. Comparative structure of the larval apical sensory organ in gastropods and hypotheses about function and developmental evolution. Invertebr Reprod Dev 41:193-200.
59. Page LR. 2003. Gastropod ontogenetic torsion: developmental remnants of an ancient evolutionary change in body plan. J Exp Zool (Mol Dev Evol) 297:11-26.
60. Panchin YV. 2005. Evolution of gap junction proteins: the pannexin alternative. J Exp Biol 208:1415-1419.
61. Pearson WL, Lloyd PE. 1989. Immunocytological localization of pedal peptide in the central nervous system and periphery of Aplysia. J Neurosci 9:318-325.
62. Pertseva MN, Shpakov AO. 2002. Conservatism of the insulin signaling system in evolution of invertebrate and vertebrate animals. J Evol Biochem Physiol 38:547-561.
63. Pimentel B, de la Rosa EJ, de Pablo F. 1996. Insulin acts as an embryonic growth factor for Drosophila neural cells. Biochem Biophys Res Commun 226:855-861.
64. Rassart E, Bedirian A, Do Carmo S, Guinard O, Sirois J, Terrisse L, Milne R. 2000. Apolipoprotein D. Biochim Biophys Acta 1482:185-198.
65. Ren M, Drivas G, D'Eustachio P, Rush MG. 1993. Ran/TC4: a small nuclear GTP-binding protein that regulates DNA synthesis. J Cell Biol 120:313-323.
66. Rifkin SA, Kim J, White KP. 2003. Evolution of gene expression in the Drosophila melanogaster subgroup. Nat Genet 33:138-144.
67. Robb SM, Ross E, Sanchez Alvarado A. 2008. SmedGD: the Schmidtea mediterranea genome database. Nucleic Acids Res 36:D599-D606.
68. Rubakhin SS, Li L, Moroz TP, Sweedler JV. 1999. Characterization of the Aplysia californica cerebral ganglion F cluster. J Neurophysiol 81:1251-1260.
69. Suarez-Castillo EC, Garcia-Arraras JE. 2007. Molecular evolution of the ependymin protein family: a necessary update. BMC Evol Biol 7:23.
70. Theil EC. 2003. Ferritin: at the crossroads of iron and oxygen metabolism. J Nutr 133:1549S-1553S.
71. Thornton JW, Need E, Crews D. 2003. Resurrecting the ancestral steroid receptor: ancient origin of estrogen signaling. Science 301:1714-1717.
72. Tsai PS, Sun B, Rochester JR, Wayne NL. 2010. Gonadotropin-releasing hormone-like molecule is not an acute reproductive activator in the gastropod, Aplysia californica. Gen Comp Endocrinol 166:280-288.
73. Von Stetina SE, Watson JD, Fox RM, Olszewski KL, Spencer WC, Roy PJ, Miller 3rd DM. 2007. Cell-specific microarray profiling experiments reveal a comprehensive picture of gene expression in the C. elegans nervous system. Genome Biol 8:R135.
74. Walters ET, Bodnarova M, Billy AJ, Dulin MF, Diaz-Rios M, Miller MW, Moroz LL. 2004. Somatotopic organization and functional properties of mechanosensory neurons expressing sensorin-a mRNA in Aplysia californica. J Comp Neurol 471:219-240.
75. White KP, Rifkin SA, Hurban P, Hogness DS. 1999. Microarray analysis of Drosophila development during metamorphosis. Science 286:2179-2184.
76. Wilkins AS. 2001. The evolution of developmental pathways. Sunderland, MA: Sinauer Associates, Inc.
77. Williams EA, Degnan BM, Gunter H, Jackson DJ, Woodcroft BJ, Degnan SM. 2009. Widespread transcriptional changes pre-empt the critical pelagic-benthic transition in the vetigastropod Haliotis asinina. Mol Ecol 18:1006-1025.
78. Wollesen T, Wanninger A, Klussmann-Kolb A. 2007. Neurogenesis of cephalic sensory organs of Aplysia californica. Cell Tissue Res 330:361-379.
79. Wollesen T, Wanninger A, Klussmann-Kolb A. 2008. Myogenesis in Aplysia californica (Cooper, 1863) (Mollusca, Gastropoda, Opisthobranchia) with special focus on muscular remodeling during metamorphosis. J Morphol 269:776-789.
80. Zhang C, Zhang R. 2006. Matrix proteins in outer shells of molluscs. Mar Biotechnol 8:572-586.
81. 2+ channel/ryanodine receptor: modulation by endogenous effectors, drugs and disease states. Pharmacol Rev 49:1.51.