메뉴 건너뛰기




Volumn 60, Issue 2, 2011, Pages 218-225

Consequences of different null models on the tree shape bias of supertree methods

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOLOGICAL MODEL; CLASSIFICATION; METHODOLOGY; PHYLOGENY;

EID: 79951569162     PISSN: 10635157     EISSN: 1076836X     Source Type: Journal    
DOI: 10.1093/sysbio/syq086     Document Type: Article
Times cited : (5)

References (25)
  • 1
    • 0002844544 scopus 로고
    • Combining trees as a way of combining data sets for phylogenetic inference, and the desirability of combining gene trees
    • Baum B.R. 1992. Combining trees as a way of combining data sets for phylogenetic inference, and the desirability of combining gene trees. Taxon. 41:3-10.
    • (1992) Taxon. , vol.41 , pp. 3-10
    • Baum, B.R.1
  • 4
    • 0002168111 scopus 로고
    • Phylogenetics: The theory and practice of phyloge-netic systematics II [book review]
    • Colless D.H. 1982. Phylogenetics: the theory and practice of phyloge-netic systematics II [book review]. Syst. Zool. 31:100-104.
    • (1982) Syst. Zool. , vol.31 , pp. 100-104
    • Colless, D.H.1
  • 5
    • 34548566074 scopus 로고    scopus 로고
    • Majority-rule supertrees
    • Cotton J.A., Wilkinson M. 2007. Majority-rule supertrees. Syst. Biol. 56:445-452.
    • (2007) Syst. Biol. , vol.56 , pp. 445-452
    • Cotton, J.A.1    Wilkinson, M.2
  • 6
    • 0001464710 scopus 로고
    • The generation of random, binary unordered trees
    • Furnas G.W. 1984. The generation of random, binary unordered trees. J. Classif. 1:187-233.
    • (1984) J. Classif. , vol.1 , pp. 187-233
    • Furnas, G.W.1
  • 7
    • 0026293264 scopus 로고
    • Null models for the number of evolutionary steps in a character on a phylogenetic tree
    • Maddison W.P., Slatkin M. 1991. Null models for the number of evolutionary steps in a character on a phylogenetic tree. Evolution. 45:1184-1197.
    • (1991) Evolution. , vol.45 , pp. 1184-1197
    • Maddison, W.P.1    Slatkin, M.2
  • 8
    • 0034100582 scopus 로고    scopus 로고
    • Distributions of cherries for two models of trees
    • DOI 10.1016/S0025-5564(99)00060-7, PII S0025556499000607
    • McKenzie A., Steel. M. 2000. Distributions of cherries for two models of trees. Math. Biosci. 164:81-92. (Pubitemid 30159961)
    • (2000) Mathematical Biosciences , vol.164 , Issue.1 , pp. 81-92
    • McKenzie, A.1    Steel, M.2
  • 9
    • 0042014724 scopus 로고    scopus 로고
    • The asymmetric median tree - A new model for building consensus trees
    • PII S0166218X96000716
    • Phillips C.A., Warnow T.J. 1996. The asymmetric median tree-a new model for building consensus trees. Discr. Appl. Math. 71: 311-335. (Pubitemid 126391786)
    • (1996) Discrete Applied Mathematics , vol.71 , Issue.1-3 , pp. 311-335
    • Phillips, C.1    Warnow, T.J.2
  • 10
    • 9744250258 scopus 로고    scopus 로고
    • Strange bayes indeed: Uniform topological priors imply non-uniform clade priors
    • DOI 10.1016/j.ympev.2004.09.001, PII S1055790304002817
    • Pickett, K.M., Randle C.P. 2005. Strange Bayes indeed: uniform topo-logical priors imply non-uniform clade priors. Mol. Phylogenet. Evol. 34:203-211. (Pubitemid 39584205)
    • (2005) Molecular Phylogenetics and Evolution , vol.34 , Issue.1 , pp. 203-211
    • Pickett, K.M.1    Randle, C.P.2
  • 11
    • 0026822436 scopus 로고
    • Phylogenetic inference based on matrix representation of trees
    • Ragan M.A. 1992. Phylogenetic inference based on matrix representation of trees. Mol. Phylogenet. Evol. 1:53-58.
    • (1992) Mol. Phylogenet. Evol. , vol.1 , pp. 53-58
    • Ragan, M.A.1
  • 12
    • 0012324491 scopus 로고    scopus 로고
    • On combining cladograms
    • Rodrigo A.G. 1996. On combining cladograms. Taxon. 45:267-274.
    • (1996) Taxon. , vol.45 , pp. 267-274
    • Rodrigo, A.G.1
  • 13
    • 33747594798 scopus 로고
    • Vicariant patterns and historical explanation in bio-geography
    • Rosen D.E. 1978. Vicariant patterns and historical explanation in bio-geography. Syst. Zool. 27:159-188.
    • (1978) Syst. Zool. , vol.27 , pp. 159-188
    • Rosen, D.E.1
  • 14
    • 2942614199 scopus 로고    scopus 로고
    • An assessment of matrix representation with compatibility in supertree reconstruction
    • Bininda-Emonds, O.R.P., editor Dordrecht (The Netherlands) Kluwer Academic
    • Ross H.A., Rodrigo A.G. 2004. An assessment of matrix representation with compatibility in supertree reconstruction. In: Bininda-Emonds, O.R.P., editor. Phylogenetic supertrees: combining information to reveal the tree of life . Dordrecht (The Netherlands): Kluwer Academic, p. 35-63.
    • (2004) Phylogenetic Supertrees: Combining Information to Reveal the Tree of Life , pp. 35-63
    • Ross, H.A.1    Rodrigo, A.G.2
  • 15
    • 0001541744 scopus 로고    scopus 로고
    • A supertree method for rooted trees
    • Semple C., Steel M. 2000. A supertree method for rooted trees. Discr. Appl. Math. 105:147-158.
    • (2000) Discr. Appl. Math. , vol.105 , pp. 147-158
    • Semple, C.1    Steel, M.2
  • 17
    • 38249005073 scopus 로고
    • Distributions on bicoloured binary trees arising from the principle of parsimony
    • Steel M. 1993. Distributions on bicoloured binary trees arising from the principle of parsimony. Discr. Appl. Math. 41:245-261.
    • (1993) Discr. Appl. Math. , vol.41 , pp. 245-261
    • Steel, M.1
  • 18
    • 33646018298 scopus 로고    scopus 로고
    • On the impossibility of uniform priors on clades
    • Steel M., Pickett K.M. 2006. On the impossibility of uniform priors on clades. Mol. Phylogenet. Evol. 39:585-586.
    • (2006) Mol. Phylogenet. Evol. , vol.39 , pp. 585-586
    • Steel, M.1    Pickett, K.M.2
  • 19
    • 12044252586 scopus 로고
    • Distributions of tree comparison metrics- some new results
    • Steel M.A., Penny. D. 1993. Distributions of tree comparison metrics- some new results. Syst. Biol. 42:126-141.
    • (1993) Syst. Biol. , vol.42 , pp. 126-141
    • Steel, M.A.1    Penny., D.2
  • 21
    • 78751551151 scopus 로고    scopus 로고
    • Random tree-puzzle leads to the Yule-Harding distribution
    • Forthcoming doi:10.1093/molbev/msq212
    • Vinh L.S., Fuehrer A., von Haeseler A. Forthcoming 2010. Random tree-puzzle leads to the Yule-Harding distribution. Mol. Biol. Evol. doi:10.1093/molbev/msq212.
    • (2010) Mol. Biol. Evol.
    • Vinh, L.S.1    Fuehrer, A.2    Von Haeseler, A.3
  • 23
    • 34447284787 scopus 로고    scopus 로고
    • Properties of supertree methods in the consensus setting
    • Wilkinson M., Cotton J.A., Lapointe F.-J., Pisani D. 2007. Properties of supertree methods in the consensus setting. Syst Biol 56: 330-337.
    • (2007) Syst Biol , vol.56 , pp. 330-337
    • Wilkinson, M.1    Cotton, J.A.2    Lapointe, F.-J.3    Pisani, D.4
  • 24
    • 12444265837 scopus 로고    scopus 로고
    • The information content of trees and their matrix representations
    • DOI 10.1080/10635150490522737
    • Wilkinson M., Cotton J.A., Thorley J.L. 2004. The information content of trees and their matrix representations. Syst. Biol. 53: 989-1001. (Pubitemid 40141321)
    • (2004) Systematic Biology , vol.53 , Issue.6 , pp. 989-1001
    • Wilkinson, M.1    Cotton, J.A.2    Thorley, J.L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.