Identification and characterization of endoglucanases for fungicidal activity in Anabaena laxa (Cyanobacteria)

Journal of Applied Phycology

Volumn 23, Issue 1, 2011, Pages 73-81

  Gupta, Vishal ^a   Natarajan, Chitra ^a   Kumar, Kanika ^b   Prasanna, Radha ^a  

^a INDIAN AGRICULTURAL RESEARCH INSTITUTE   (India)

^b NATIONAL RESEARCH CENTRE ON PLANT BIOTECHNOLOGY   (India)

Author keywords

Cyanobacteria; Endoglucanase; Fungicidal activity; Pythium aphanidermatum

Indexed keywords

ANABAENA; ANABAENA LAXA; CYANOBACTERIA; ESCHERICHIA COLI; PYTHIUM; PYTHIUM APHANIDERMATUM;

EID: 79951554029     PISSN: 09218971     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10811-010-9539-1     Document Type: Article

References (59)

1. Altschul SF, Gish W, Mille W, Meyers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
2. Beguin P, Millet J, Chauvaux S, Salamitou S, Tokatlidis K, Navas J, Fujino T, Lemaire M, Raynaud O, Daniel MK, Aubert JP (1992) Bacterial cellulases. Biochem Soc Trans 20: 42-46.
3. Bendtsen JD, Neilsen H, Heijne GV, Brunak S (2004) Improved prediction of signal peptides: SignalP 3. 0. J Mol Biol 340: 783-795.
4. Chang BY, Shyu YT, Doi RH (1992) The interaction between Bacillus subtilis sigma-A factor and RNA polymerase with promoters. Biochimie 74: 601-612.
5. Chang WT, Chen YC, Jao CL (2007) Fungicidal activity and enhancement of plant growth by Bacillus cereus grown on shellfish chitin wastes. Biores Technol 98: 1224-1230.
6. Choi YJ, Kim EJ, Piao Z, Yun YC, Shin YC (2004) Purification and characterization of chitosanase from Bacillus sp. strain KCTC 0377BP and its application for the production of chitosan oligosaccharides. Appl Environ Microbiol 70: 4522-4531.
7. Coutinho PM, Henrisaat B (1999) Carbohydrate-active enzymes: an integrated database approach. In: Gilbert HJ, Davies GJ, Henrisaat B, Svensson B (eds) Recent advances in carbohydrate bioengineering. The Royal Society of Chemistry, Cambridge, pp 3-12.
8. Endo Y, Yokoyama M, Morimoto M, Shirai K, Chikamatsu G, Kato N, Tsukagoshi N, Kato M, Kobayashi T (2008) Novel promoter sequence required for inductive expression of the Aspergillus nidulans endoglucanase gene eglA. Biosci Biotechnol Biochem 72: 312-320.
9. Gao XA, Ju WT, Jung WJ, Park RD (2007) Purification and characterization of chitosanase from Bacillus cereus D-11. Carbohydr Polym 72: 513-520.
10. Geelen D, Montagu VM, Holsters M (1995) Cloning of an Azorhizobium caulinodans endoglucanase gene and analysis of its role in symbiosis. Appl Environ Microbiol 61: 3304-3310.
11. Ghosh TK, Bailey HJ, Bisaria VS, Enari TM (1983) Measurement of cellulase activity. In: International union of pure and applied chemistry commission of biotechnology. Final recommendation, pp 1-13.
12. Han SO, Yukawa H, Inui M, Doi RH (2003) Transcription of Clostridium cellulovorans cellulosomal cellulase and hemicellulase genes. J Bacteriol 185: 2520-2527.
13. Harley CB, Reynolds RP (1987) Analysis of E. coli promoter sequences. Nucleic Acids Res 15: 2343-2361.
14. Hara Y, Hinoki Y, Shimoi H, Ito K (2003) Cloning and sequence analysis of endoglucanase genes from an industrial fungus, Aspergillus kawachii. Biosci Biotechnol Biochem 67: 2010-2013.
15. Hedges A, Wolfe RS (1974) Extracellular enzyme from Myxcobacter AL-1 that exhibits both β-1, 4-glucanase and chitosanase activities. J Bacteriol 120: 844-853.
16. Henrissat B, Driguez H, Viet C, Schulein M (1985) Synergism of cellulases from Trichoderma reesei in the degradation of cellulose. Biotechnol 3: 722-726.
17. Henrissat B, Claeyssens M, Tomme P, Lemesle L, Mornon JP (1989) Cellulase families revealed by hydrophobic cluster analysis. Gene 81: 83-95.
18. Hill TW, Loprete DM, Kim NV, Mokhtari SPB, Hardin LV (2002) Proteolytic release of membrane-bound endo-(1, 4)-β-glucanase activity associated with cell wall softening in Achlya ambisexualis. Can J Microbiol 48: 93-98.
19. Hong IP, Jang HK, Lee SY, Choi SG (2003) Clone and characterization of a bifunctional cellulase-chitosanase gene from Bacillus licheniformis NBL420. J Microbiol Biotechnol 13: 35-42.
20. Ike M, Ko Y, Yokoyama K, Sumitani JI, Kawaguchi T, Ogasawara W, Okada H, Morikawa Y (2007) Cellobiohydrolase I (Cel7A) from Trichoderma reesei has chitosanase activity. J Mol Cat B: Enzymatic 47: 159-163.
21. Inoue T, Murashima K, Azuma J, Sugimoto A, Slaytor M (1997) Cellulose and xylan utilization in the lower termite Reticulitermes speratus. J Insect Physiol 43: 235-242.
22. Jaiswal P, Prasanna R, Singh PK (2008) Cyanobacterial bioactive molecules-an overview of their "cidal" properties. Can J Microbiol 54: 701-717.
23. Kaushik BD (1987) Laboratory methods for blue green algae. Associated Publishing, New Delhi.
24. Kimoto H, Kusaoke H, Yamamoto I, Fujii Y, Onodera T, Taketo A (2002) Biochemical and genetic properties of Paenibacillus glycosyl hydrolase having chitosanase activity and discoidin domain. J Biol Chem 277: 14695-14702.
25. Kurakake M, Yo-u S, Nakagawa K, Sugihara M, Komaki T (2000) Properties of chitosanase from Bacillus cereus S1. Curr Microbiol 40: 6-9.
26. Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A (2007) ClustalW and ClustalX version 2. Bioinformatics 23: 2947-2948.
27. Ledger TN, Jaubert S, Bosselut N, Abad P, Rosso MN (2006) Characterization of a new β-1, 4-endoglucanase gene from the root-knot nematode Meloidogyne incognita and evolutionary scheme for phytonematode family 5 glycosyl hydrolases. Gene 382: 121-128.
28. Lima AOS, Quecine MC, Fungaro MHP, Andreote FD, Maccheroni JW, Araujo WL, Silva-Filho MC, Pizzirani-Kleiner AA, Azevedo JL (2005) Molecular characterization of a β-1, 4-endoglucanase from a endophytic Bacillus pumilus strain. Appl Microbiol Biotechnol 68: 57-65.
29. Liu J, Xia WS (2005) Characterization of chitosanase from cellulase produced by Trichoderma viride. Chinese J Biochem Mol Biol 21: 713-716.
30. Liu J, Xia WS (2006) Purification and characterization of a bifunctional enzyme with chitosanase and cellulase activity from commercial cellulase. Biochem Eng J 30: 82-87.
31. Loprete DM, Hill TW (2002) Isolation and characterization of an endo-(1, 4)-β-glucanase secreted by Achlya ambisexualis. Mycologia 94: 908-911.
32. Manjunath M, Prasanna R, Lata N, Dureja P, Singh R, Kumar A, Jaggi S, Kaushik BD (2010) Biocontrol potential of cyanobacterial metabolites against damping off disease caused by Pythium aphanidermatum in solanaceous vegetables. Arch Phytopathol Plant Protect 43: 666-677.
33. Meyer F, Goesmann A, McHardy AC (2003) GenDB- an open source genome annotation system for prokaryote genomes. Nucleic Acids Res 31: 2187-2195.
34. Miller GL (1959) Use of dinitrosalicylic acid reagent for determination of reducing sugar. Anal Chem 31: 426-428.
35. Mitsutomi M, Isono M, Uchiyama A, Nikaidou N, Ikegami T, Watanabe T (1998) Chitosanase activity of the enzyme previous reported as β-1, 3/β-1, 4-glucanase from Bacillus circulans WL-12. Biosci Biotechnol Biochem 62: 2107-2114.
36. Namikoshi M, Rinehart KL (1996) Bioactive compounds produced by cyanobacteria. J Indus Microbiol Biotechnol 17: 373-384.
37. Nayak S, Prasanna R, Prasanna BM, Sahoo DB (2009) Genotypic and phenotypic diversity of Anabaena isolates from diverse rice agroecologies of India. J Basic Microbiol 49: 65-177.
38. Ohmiya Y, Takeda T, Nakamura S, Sakai F, Hayashi T (1995) Purification and properties of wall-bound endo-1, 4 glucanase from suspension-cultured poplar cells. Plant Cell Physiol 36: 607-614.
39. Park JK, Shimono K, Ochiai N, Shigeru K, Kurita M, Ohta Y, Tanaka K, Matsuda H, Kawamukai M (1999) Purification, characterization and gene analysis of a chitosanase (ChoA) from Matsuebacter chitosanotabidus 3001. J Bacteriol 181: 6642-6649.
40. Peberdy JF (1990) Fungal cell walls-a review. In: Kuhn OJ, Trinci APJ, Jung MJ, Goosey MW, Copping LG (eds) Biochemistry of cell walls and membranes in fungi. Springer, Berlin, pp 5-30.
41. Pedraza-Reyes M (1997) The bifunctional enzyme chitosanase-cellulase produced by the gram negative microorganism Myxobacter sp. AL-1 is highly similar to Bacillus subtilis endo-glucanases. Arch Microbiol 168: 321-327.
42. Posta K, Beki E, Wilson DB, Kukolya J, Hornok L (2004) Cloning, characterization and phylogenetic relationships of cel5B, a new endoglucanase encoding gene from Thermobifida fusca. J Basic Microbiol 44: 383-399.
43. Prasanna R, Lata N, Tripathi R, Gupta V, Middha S, Joshi M, Ancha R, Kaushik BD (2008) Evaluation of fungicidal activity of extracellular filtrates of cyanobacteria-possible role of hydrolytic enzymes. J Basic Microbiol 48: 186-194.
44. Prasanna R, Gupta V, Natarajan C, Chaudhary V (2010a) Bioprospecting for genes involved in the production of chitosanases and microcystin-like compounds in Anabaena strains. World J Microbiol Biotechnol 26: 717-724.
45. Prasanna R, Sood A, Jaiswal P, Nayak S, Gupta V, Chaudhary V, Joshi M, Natarajan C (2010b) Rediscovering cyanobacteria as valuable sources of bioactive compounds. Appl Biochem Microbiol 46: 133-147.
46. Rajnish KN, Choudhary KGM, Gunasekaran P (2008) Functional characterization of a putative endo-β-1, 4-glucanase gene in the genome of Zymomonas mobilis. Biotechnol Lett 30: 1461-1467.
47. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor.
48. Saito A, Takaaki O, Daisuke M, Hiroko F, Kanako T, Shin-Ya N, Takeshi W, Yoshiho N, Akikazu A (2009) Molecular characterization and antifungal activity of a family 46 chitosanase from Amycolatopsis sp. CsO-2. FEMS Microbiol Lett 293: 79-84.
49. Shi P, Yao G, Yang P, Li N, Luo H, Bai Y, Wang Y, Yao B (2010) Cloning, characterization, and antifungal activity of an endo-1, 3-β-D-glucanase from Streptomyces sp. S27. Appl Microbiol Biotechnol 85: 1483-1490.
50. Sode K, Hatano N, Tatara M (1995) Cloning of a marine cyanobacterial promoter for foreign gene expression using a promoter probe vector. Appl Biochem Biotechnol 59: 349-360.
51. Stanier RY, Kunisawa R, Mandal M, Cohen-Bazire G (1971) Purification and properties of unicellular blue green algae (Order: Chroococcales). Bacteriol Rev 35: 171-305.
52. Tanabe T, Morinaga K, Fukamizo T (2003) Novel chitosanase from Streptomyces griseus HUT 6037 with transglycosylation activity. Biosci Biotechnol Biochem 67: 354-364.
53. Teather RM, Wood PJ (1982) Use of Congo Red polysaccharide interactions in enumeration and characterization of cellulolytic bacteria from bovine rumen. Appl Environ Microbiol 43: 777-780.
54. Theberge M, Lacaze P, Shareck F, Morosoli R, Kluepfel D (1992) Purification and characterization of an endoglucanase from Streptomyces lividans 66 and DNA sequence of the gene. Appl Environ Microbiol 58: 815-820.
55. Wang SL, Yieh TC, Shih IL (1999) Production of antifungal compounds by Pseudomonas aeruginosa K-187 using shrimp and crab shell powder as a carbon source. Enzyme Microb Technol 25: 142-148.
56. Warne SE, deHaseth PL (1993) Promoter recognition by Escherichia coli RNA polymerase. Effects of single base pair deletions and insertions in the spacer DNA separating the -10 and -35 regions are dependent on spacer DNA sequence. Biochem 32: 6134-6140.
57. Watson BJ, Zhang H, Longmire AG, Moon YH, Hutcheson SW (2009) Processive endoglucanases mediate degradation of cellulose by Saccharophagus degradans. J Bacteriol 191: 5697-5705.
58. Wong DDWS, Chan VJ, McCormack AA, Batt SB (2009) A novel xyloglucan-specific endo-β-1, 4-glucanase: biochemical properties and inhibition studies. Appl Microbiol Biotechnol. doi: 10. 1007/s00253-009-2364-2.
59. Wood TM (1992) Fungal cellulases. Biochem Soc Trans 20: 46-53.