-
1
-
-
0025092693
-
Ulcerative colitis and colorectal cancer: A population-based study
-
Ekbom, A.; Helmick, C.; Zack, M.; Adami, H. O. Ulcerative colitis and colorectal cancer. A population-based study. N. Engl. J. Med. 1990, 323 (18), 1228-33. (Pubitemid 20366527)
-
(1990)
New England Journal of Medicine
, vol.323
, Issue.18
, pp. 1228-1233
-
-
Ekbom, A.1
Helmick, C.2
Zack, M.3
Adami, H.-O.4
-
2
-
-
0020079113
-
Cancer morbidity in ulcerative colitis
-
Prior, P.; Gyde, S. N.; Macartney, J. C.; Thompson, H.; Waterhouse, J. A.; Allan, R. N. Cancer morbidity in ulcerative colitis. Gut 1982, 23 (6), 490-7. (Pubitemid 12119347)
-
(1982)
Gut
, vol.23
, Issue.6
, pp. 490-497
-
-
Prior, P.1
Gyde, S.N.2
Macartney, J.C.3
-
3
-
-
0026663080
-
DNA aneuploidy in colonic biopsies predicts future development of dysplasia in ulcerative colitis
-
Rubin, C. E.; Haggitt, R. C.; Burmer, G. C.; Brentnall, T. A.; Stevens, A. C.; Levine, D. S.; Dean, P. J.; Kimmey, M.; Perera, D. R.; Rabinovitch, P. S. DNA aneuploidy in colonic biopsies predicts future development of dysplasia in ulcerative colitis. Gastroenterology 1992, 103 (5), 1611-20.
-
(1992)
Gastroenterology
, vol.103
, Issue.5
, pp. 1611-1620
-
-
Rubin, C.E.1
Haggitt, R.C.2
Burmer, G.C.3
Brentnall, T.A.4
Stevens, A.C.5
Levine, D.S.6
Dean, P.J.7
Kimmey, M.8
Perera, D.R.9
Rabinovitch, P.S.10
-
4
-
-
0021017589
-
Dysplasia in inflammatory bowel disease: Standardized classification with provisional clinical applications
-
Riddell, R. H.; Goldman, H.; Ransohoff, D. F.; Appelman, H. D.; Fenoglio, C. M.; Haggitt, R. C.; Ahren, C.; Correa, P.; Hamilton, S. R.; Morson, B. C. et al., Dysplasia in inflammatory bowel disease: standardized classification with provisional clinical applications. Hum. Pathol. 1983, 14 (11), 931-68.
-
(1983)
Hum. Pathol
, vol.14
, Issue.11
, pp. 931-968
-
-
Riddell, R.H.1
Goldman, H.2
Ransohoff, D.F.3
Appelman, H.D.4
Fenoglio, C.M.5
Haggitt, R.C.6
Ahren, C.7
Correa, P.8
Hamilton, S.R.9
Morson, B.C.10
-
5
-
-
40549107755
-
A landscape of peaks and valleys
-
America, A. H.; Cordewener, J. H.; Comparative, L. C.-M. S. a landscape of peaks and valleys. Proteomics 2008, 8 (4), 731-49.
-
(2008)
Proteomics
, vol.8
, Issue.4
, pp. 731-749
-
-
America, A.H.1
Cordewener, J.H.2
Comparative, L.C.-M.S.3
-
6
-
-
38649095599
-
An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data
-
DOI 10.1021/pr700758r
-
Mueller, L. N.; Brusniak, M. Y.; Mani, D. R.; Aebersold, R. An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data. J. Proteome Res. 2008, 7 (1), 51-61. (Pubitemid 351171115)
-
(2008)
Journal of Proteome Research
, vol.7
, Issue.1
, pp. 51-61
-
-
Mueller, L.N.1
Brusniak, M.-Y.2
Mani, D.R.3
Aebersold, R.4
-
7
-
-
58149299336
-
Significance analysis of spectral count data in label-free shotgun proteomics
-
Choi, H.; Fermin, D.; Nesvizhskii, A. Significance Analysis of Spectral Count Data in Label-free Shotgun Proteomics. Mol. Cell. Proteomics 2008, 7 (12), 2373-85.
-
(2008)
Mol. Cell. Proteomics
, vol.7
, Issue.12
, pp. 2373-2385
-
-
Choi, H.1
Fermin, D.2
Nesvizhskii, A.3
-
8
-
-
49749115277
-
Comparison of a label-free quantitative proteomic method based on peptide ion current area to the isotope coded affinity tag method
-
Ryu, S.; Gallis, B.; Goo, Y.; Shaffer, S. A.; Radulovic, D.; Goodlett, D. Comparison of a Label-Free Quantitative Proteomic Method Based on Peptide Ion Current Area to the Isotope Coded Affinity Tag Method. Cancer Inform. 2008, 6, 243-255.
-
(2008)
Cancer Inform
, vol.6
, pp. 243-255
-
-
Ryu, S.1
Gallis, B.2
Goo, Y.3
Shaffer, S.A.4
Radulovic, D.5
Goodlett, D.6
-
9
-
-
27644543078
-
Comparison of label-free methods for quantifying human proteins by shotgun proteomics
-
DOI 10.1074/mcp.M500084-MCP200
-
Old, W.; Meyer-Arendt, K.; Aveline-Wolf, L.; Pierce, K.; Mendoza, A.; Sevinsky, J.; Resing, K.; Ahn, N. Comparison of Label-free Methods for Quantifying Human Proteins by Shotgun Proteomics. Mol. Cell. Proteomics 2005, 4, 1487-1502. (Pubitemid 41555475)
-
(2005)
Molecular and Cellular Proteomics
, vol.4
, Issue.10
, pp. 1487-1502
-
-
Old, W.M.1
Meyer-Arendt, K.2
Aveline-Wolf, L.3
Pierce, K.G.4
Mendoza, A.5
Sevinsky, J.R.6
Resing, K.A.7
Ahn, N.G.8
-
10
-
-
77951049868
-
Proteins that underlie neoplastic progression of ulcerative colitis
-
Brentnall, T. A.; Pan, S.; Bronner, M. P.; Crispin, D. A.; Mirzaei, H.; Cooke, K.; Tamura, Y.; Nikolskaya, T.; Jebailey, L.; Goodlett, D. R.; McIntosh, M.; Aebersold, R.; Rabinovitch, P. S.; Chen, R. Proteins That Underlie Neoplastic Progression of Ulcerative Colitis. Proteomics Clin. Appl. 2009, 3 (11), 1326-1337.
-
(2009)
Proteomics Clin. Appl
, vol.3
, Issue.11
, pp. 1326-1337
-
-
Brentnall, T.A.1
Pan, S.2
Bronner, M.P.3
Crispin, D.A.4
Mirzaei, H.5
Cooke, K.6
Tamura, Y.7
Nikolskaya, T.8
Jebailey, L.9
Goodlett, D.R.10
McIntosh, M.11
Aebersold, R.12
Rabinovitch, P.S.13
Chen, R.14
-
11
-
-
0032695798
-
Pancolonic chromosomal instability precedes dysplasia and cancer in ulcerative colitis
-
Rabinovitch, P. S.; Dziadon, S.; Brentnall, T. A.; Emond, M. J.; Crispin, D. A.; Haggitt, R. C.; Bronner, M. P. Pancolonic chromosomal instability precedes dysplasia and cancer in ulcerative colitis. Cancer Res. 1999, 59 (20), 5148-53. (Pubitemid 29503975)
-
(1999)
Cancer Research
, vol.59
, Issue.20
, pp. 5148-5153
-
-
Rabinovitch, P.S.1
Dziadon, S.2
Brentnall, T.A.3
Emond, M.J.4
Crispin, D.A.5
Haggitt, R.C.6
Bronner, M.P.7
-
12
-
-
0036646079
-
Automation of nanoscale microcapillary liquid chromatography-tandem mass spectrometry with a vented column
-
DOI 10.1021/ac025529o
-
Licklider, L. J.; Thoreen, C. C.; Peng, J.; Gygi, S. P. Automation of nanoscale microcapillary liquid chromatography-tandem mass spectrometry with a vented column. Anal. Chem. 2002, 74, 3076-3083. (Pubitemid 34755220)
-
(2002)
Analytical Chemistry
, vol.74
, Issue.13
, pp. 3076-3083
-
-
Licklider, L.J.1
Thoreen, C.C.2
Peng, J.3
Gygi, S.P.4
-
13
-
-
3142702204
-
TANDEM: Matching proteins with tandem mass spectra
-
DOI 10.1093/bioinformatics/bth092
-
Craig, R.; Beavis, R. C. TANDEM: matching proteins with tandem mass spectra. Bioinformatics 2004, 20 (9), 1466-7. (Pubitemid 38931421)
-
(2004)
Bioinformatics
, vol.20
, Issue.9
, pp. 1466-1467
-
-
Craig, R.1
Beavis, R.C.2
-
14
-
-
33746930864
-
A uniform proteomics MS/MS analysis platform utilizing open XML file formats
-
Keller, A.; Eng, J. K.; Zhang, N.; Li, X. J.; Aebersold, R. A uniform proteomics MS/MS analysis platform utilizing open XML file formats. Mol. Syst. Biol. 2005, 1, 1-8.
-
(2005)
Mol. Syst. Biol
, vol.1
, pp. 1-8
-
-
Keller, A.1
Eng, J.K.2
Zhang, N.3
Li, X.J.4
Aebersold, R.5
-
15
-
-
0037108887
-
Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
-
DOI 10.1021/ac025747h
-
Keller, A.; Nesvizhskii, A. I.; Kolker, E.; Aebersold, R. Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. Anal. Chem. 2002, 74 (20), 5383-92. (Pubitemid 35215372)
-
(2002)
Analytical Chemistry
, vol.74
, Issue.20
, pp. 5383-5392
-
-
Keller, A.1
Nesvizhskii, A.I.2
Kolker, E.3
Aebersold, R.4
-
16
-
-
34547156610
-
A platform for accurate mass and time analyses of mass spectrometry data
-
DOI 10.1021/pr070146y
-
May, D.; Fitzgibbon, M.; Liu, Y.; Holzman, T.; Eng, J.; Kemp, C. J.; Whiteaker, J.; Paulovich, A.; McIntosh, M. A Platform for Accurate Mass and Time Analyses of Mass Spectrometry Data. J. Proteome Res. 2007, 6, 2685-94. (Pubitemid 47122364)
-
(2007)
Journal of Proteome Research
, vol.6
, Issue.7
, pp. 2685-2694
-
-
May, D.1
Fitzgibbon, M.2
Liu, Y.3
Holzman, T.4
Eng, J.5
Kemp, C.J.6
Whiteaker, J.7
Paulovich, A.8
McIntosh, M.9
-
17
-
-
33747180294
-
A suite of algorithms for the comprehensive analysis of complex protein mixtures using high-resolution LC-MS
-
DOI 10.1093/bioinformatics/btl276
-
Bellew, M.; Coram, M.; Fitzgibbon, M.; Igra, M.; Randolph, T.; Wang, P.; May, D.; Eng, J.; Fang, R.; Lin, C.; Chen, J.; Goodlett, D.; Whiteaker, J.; Paulovich, A.; McIntosh, M. A suite of algorithms for the comprehensive analysis of complex protein mixtures using high-resolution LC-MS. Bioinformatics 2006, 22 (15), 1902-9. (Pubitemid 44283036)
-
(2006)
Bioinformatics
, vol.22
, Issue.15
, pp. 1902-1909
-
-
Bellew, M.1
Coram, M.2
Fitzgibbon, M.3
Igra, M.4
Randolph, T.5
Wang, P.6
May, D.7
Eng, J.8
Fang, R.9
Lin, C.10
Chen, J.11
Goodlett, D.12
Whiteaker, J.13
Paulovich, A.14
McIntosh, M.15
-
18
-
-
61349134858
-
Peptide sequence confidence in accurate mass and time analysis and its use in complex proteomics experiments
-
May, D.; Liu, Y.; Law, W.; Fitzgibbon, M.; Wang, H.; Hanash, S.; McIntosh, M. Peptide Sequence Confidence in Accurate Mass and Time Analysis and Its Use in Complex Proteomics Experiments. J. Proteome Res. 2008, 7, 5148-56.
-
(2008)
J. Proteome Res
, vol.7
, pp. 5148-5156
-
-
May, D.1
Liu, Y.2
Law, W.3
Fitzgibbon, M.4
Wang, H.5
Hanash, S.6
McIntosh, M.7
-
19
-
-
33747838164
-
Normalization regarding non-random missing values in high-throughput mass spectrometry data
-
Wang, P.; Tang, H.; Zhang, H.; Whiteaker, J.; Paulovich, A. G.; McIntosh, M. Normalization regarding non-random missing values in high-throughput mass spectrometry data. Proc. Pac. Symp. Biocomput. 2006, 11, 315-326.
-
(2006)
Proc. Pac. Symp. Biocomput
, vol.11
, pp. 315-326
-
-
Wang, P.1
Tang, H.2
Zhang, H.3
Whiteaker, J.4
Paulovich, A.G.5
McIntosh, M.6
-
20
-
-
77949676526
-
A guided tour of the trans-proteomic pipeline
-
Deutsch, E. W.; Mendoza, A.; Shteynberg, D.; Farrah, T.; Lam, H.; Tasman, N.; Sun, Z.; Nilsson, E.; Pratt, B.; Prazen, B.; Eng, J.; Martin, D.; Nesvizhskii, A.; Aebersold, R. A guided tour of the Trans- Proteomic Pipeline. Proteomics 2010, 10, 1-10.
-
(2010)
Proteomics
, vol.10
, pp. 1-10
-
-
Deutsch, E.W.1
Mendoza, A.2
Shteynberg, D.3
Farrah, T.4
Lam, H.5
Tasman, N.6
Sun, Z.7
Nilsson, E.8
Pratt, B.9
Prazen, B.10
Eng, J.11
Martin, D.12
Nesvizhskii, A.13
Aebersold, R.14
-
21
-
-
63049118268
-
Brainspecific proteins decline in the cerebrospinal fluid of humans with Huntington's disease
-
Fang, Q.; Strand, A.; Law, W.; Faca, V. M.; Fitzgibbon, M. P.; Hamel, N.; Houle, B.; Liu, X.; May, D. H.; Poschmann, G.; Roy, L.; Stuhler, K.; Ying, W.; Zhang, J.; Zheng, Z.; Bergeron, J. J.; Hanash, S.; He, F.; Leavitt, B. R.; Meyer, H. E.; Qian, X.; McIntosh, M. W. Brainspecific proteins decline in the cerebrospinal fluid of humans with Huntington's disease. Mol. Cell. Proteomics 2008, 8 (3), 451-66.
-
(2008)
Mol. Cell. Proteomics
, vol.8
, Issue.3
, pp. 451-466
-
-
Fang, Q.1
Strand, A.2
Law, W.3
Faca, V.M.4
Fitzgibbon, M.P.5
Hamel, N.6
Houle, B.7
Liu, X.8
May, D.H.9
Poschmann, G.10
Roy, L.11
Stuhler, K.12
Ying, W.13
Zhang, J.14
Zheng, Z.15
Bergeron, J.J.16
Hanash, S.17
He, F.18
Leavitt, B.R.19
Meyer, H.E.20
Qian, X.21
McIntosh, M.W.22
more..
-
23
-
-
67650351489
-
A comparison of labeling and labelfree mass spectrometry-based proteomics approaches
-
Patel, V. J.; Thalassinos, K.; Slade, S. E.; Connolly, J. B.; Crombie, A.; Murrell, J. C.; Scrivens, J. H. A comparison of labeling and labelfree mass spectrometry-based proteomics approaches. J. Proteome Res. 2009, 8 (7), 3752-9.
-
(2009)
J. Proteome Res.
, vol.8
, Issue.7
, pp. 3752-3759
-
-
Patel, V.J.1
Thalassinos, K.2
Slade, S.E.3
Connolly, J.B.4
Crombie, A.5
Murrell, J.C.6
Scrivens, J.H.7
-
24
-
-
0038005018
-
DAVID: Database for annotation visualization and integrated discovery
-
Dennis, G., Jr.; Sherman, B. T.; Hosack, D. A.; Yang, J.; Gao, W.; Lane, H. C.; Lempicki, R. A. DAVID: Database for Annotation, Visualization, and Integrated Discovery. Genome Biol. 2003, 4 (5), P3.
-
(2003)
Genome Biol
, vol.4
, Issue.5
-
-
Dennis Jr., G.1
Sherman, B.T.2
Hosack, D.A.3
Yang, J.4
Gao, W.5
Lane, H.C.6
Lempicki, R.A.7
-
25
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
Huang da, W.; Sherman, B. T.; Lempicki, R. A. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc. 2009, 4 (1), 44-57.
-
(2009)
Nat. Protoc
, vol.4
, Issue.1
, pp. 44-57
-
-
Huang Da, W.1
Sherman, B.T.2
Lempicki, R.A.3
-
27
-
-
41049085170
-
Choose your own path: Specificity in Ras GTPase signaling
-
DOI 10.1039/b716887j
-
Goldfinger, L. E. Choose your own path: specificity in Ras GTPase signaling. Mol. Biosyst. 2008, 4 (4), 293-9. (Pubitemid 351422584)
-
(2008)
Molecular BioSystems
, vol.4
, Issue.4
, pp. 293-299
-
-
Goldfinger, L.E.1
-
28
-
-
20344385260
-
Targeting apoptosis pathways in cancer therapy
-
Ghobrial, I. M.; Witzig, T. E.; Adjei, A. A. Targeting apoptosis pathways in cancer therapy. CA Cancer J. Clin. 2005, 55 (3), 178-94. (Pubitemid 40826487)
-
(2005)
Ca-A Cancer Journal for Clinicians
, vol.55
, Issue.3
, pp. 178-194
-
-
Ghobrial, I.M.1
Witzig, T.E.2
Adjei, A.A.3
-
29
-
-
67349088746
-
TRAP1, a novel mitochondrial chaperone responsible for multidrug resistance and protection from apoptotis in human colorectal carcinoma cells
-
Costantino, E.; Maddalena, F.; Calise, S.; Piscazzi, A.; Tirino, V.; Fersini, A.; Ambrosi, A.; Neri, V.; Esposito, F.; Landriscina, M. TRAP1, a novel mitochondrial chaperone responsible for multidrug resistance and protection from apoptotis in human colorectal carcinoma cells. Cancer Lett. 2009, 279 (1), 39-46.
-
(2009)
Cancer Lett
, vol.279
, Issue.1
, pp. 39-46
-
-
Costantino, E.1
Maddalena, F.2
Calise, S.3
Piscazzi, A.4
Tirino, V.5
Fersini, A.6
Ambrosi, A.7
Neri, V.8
Esposito, F.9
Landriscina, M.10
-
30
-
-
23044504066
-
Altered ErbB receptor signaling and gene expression in cisplatin-resistant ovarian cancer
-
DOI 10.1158/0008-5472.CAN-04-2684
-
Macleod, K.; Mullen, P.; Sewell, J.; Rabiasz, G.; Lawrie, S.; Miller, E.; Smyth, J. F.; Langdon, S. P. Altered ErbB receptor signaling and gene expression in cisplatin-resistant ovarian cancer. Cancer Res. 2005, 65 (15), 6789-800. (Pubitemid 41060717)
-
(2005)
Cancer Research
, vol.65
, Issue.15
, pp. 6789-6800
-
-
Macleod, K.1
Mullen, P.2
Sewell, J.3
Rabiasz, G.4
Lawrie, S.5
Miller, E.6
Smyth, J.F.7
Langdon, S.P.8
-
31
-
-
73949083526
-
Cytoprotective mitochondrial chaperone TRAP-1 as a novel molecular target in localized and metastatic prostate cancer
-
Leav, I.; Plescia, J.; Goel, H. L.; Li, J.; Jiang, Z.; Cohen, R. J.; Languino, L. R.; Altieri, D. C. Cytoprotective mitochondrial chaperone TRAP-1 as a novel molecular target in localized and metastatic prostate cancer. Am. J. Pathol. , 176 (1), 393-401.
-
Am. J. Pathol
, vol.176
, Issue.1
, pp. 393-401
-
-
Leav, I.1
Plescia, J.2
Goel, H.L.3
Li, J.4
Jiang, Z.5
Cohen, R.J.6
Languino, L.R.7
Altieri, D.C.8
|