X-MATE: A flexible system for mapping short read data

Bioinformatics

Volumn 27, Issue 4, 2011, Pages 580-581

  Wood, David L A ^a   Xu, Qinying ^a   Pearson, John V ^a   Cloonan, Nicole ^a   Grimmond, Sean M ^a  

^a UNIVERSITY OF QUEENSLAND   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOLOGY; CHROMOSOME MAP; COMPUTER PROGRAM; GENETIC DATABASE; METHODOLOGY; SEQUENCE ANALYSIS;

CHROMOSOME MAPPING; COMPUTATIONAL BIOLOGY; DATABASES, GENETIC; SEQUENCE ANALYSIS, RNA; SOFTWARE;

EID: 79951533217     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btq698     Document Type: Article

References (7)

1. Cloonan, N. et al. (2009) RNA-MATE: a recursive mapping strategy for high-throughput RNA-sequencing data. Bioinformatics, 25, 2615-2616.
2. Goecks, J. et al. (2010) Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol., 11, R86.
3. Hashimoto, T. et al., (2009) Probabilistic resolution of multi-mapping reads inmassively parallel sequencing data using MuMRescueLite. Bioinformatics, 25, 2613-2614.
4. Kent, W.J. et al. (2002) The human genome browser at UCSC. Genome Res., 12, 996-1006.
5. Li, H. et al. (2009) The sequence alignment/map format and SAMtools. Bioinformatics, 25, 2078-2079.
6. Pepke, S. et al. (2009) Computation for ChIP-seq and RNA-seq studies. Nature. Methods, 6, S22-S32.
7. Trapnell, C. and Salzberg, S.L. (2009) How to map billions of short reads onto genomes. Nat. Biotechnol., 27, 455-457.