Identifying antimicrobial resistance genes of human clinical relevance within Salmonella isolated from food animals in Great Britain

Journal of Antimicrobial Chemotherapy

Volumn 66, Issue 3, 2011, Pages 550-559

  Anjum, Muna F ^a   Choudhary, Suman ^a   Morrison, Victoria ^a   Snow, Lucy C ^a   Mafura, Muriel ^a   Slickers, Peter ^b   Ehricht, Ralf ^b   Woodward, Martin J ^a  

^a VETERINARY LABORATORIES AGENCY   (United Kingdom)

^b Alere Technologies GmbH   (Germany)

Author keywords

Gene chip; Integrons; Livestock; Multiple resistances

Indexed keywords

AMIKACIN; AMOXICILLIN PLUS CLAVULANIC ACID; AMPICILLIN; APRAMYCIN; CEFOTAXIME; CEFTAZIDIME; CHLORAMPHENICOL; CIPROFLOXACIN; COTRIMOXAZOLE; FURAZOLIDONE; GENTAMICIN; NALIDIXIC ACID; NEOMYCIN; STREPTOMYCIN; SULFONAMIDE; TETRACYCLINE;

ANIMAL FOOD; ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIAL GENE; BACTERIUM CONJUGATION; BACTERIUM ISOLATE; CATTLE; CLINICAL ASSESSMENT; CONTROLLED STUDY; DISK DIFFUSION; GENE CHIP; GENE CLUSTER; GENETIC RESISTANCE; HUMAN; INTEGRON; NONHUMAN; PHENOTYPE; PLASMID; POULTRY; SALMONELLA ENTERICA; SALMONELLA GENOMIC ISLAND 1 GENE; SALMONELLA TYPHIMURIUM; SEROTYPE; SWINE; UNITED KINGDOM;

ANIMALS; ANTI-BACTERIAL AGENTS; CONJUGATION, GENETIC; DNA, BACTERIAL; DRUG RESISTANCE, BACTERIAL; GENES, BACTERIAL; GENOMIC ISLANDS; GREAT BRITAIN; LIVESTOCK; MICROARRAY ANALYSIS; MICROBIAL SENSITIVITY TESTS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PLASMIDS; SALMONELLA ENTERICA; SALMONELLA INFECTIONS, ANIMAL;

EID: 79951532219     PISSN: 03057453     EISSN: 14602091     Source Type: Journal    
DOI: 10.1093/jac/dkq498     Document Type: Article

References (38)

1. Carattoli A. Plasmid-mediated antimicrobial resistance in Salmonella enterica. Curr Issues Mol Biol 2003; 5: 113-22.
2. Parry CM, Threlfall EJ. Antimicrobial resistance in typhoidal and nontyphoidal salmonellae. Curr Opin Infect Dis 2008; 21: 531-8.
3. Chopra I, Roberts M. Tetracycline antibiotics: mode of action, applications, molecular biology, and epidemiology of bacterial resistance. Microbiol Mol Biol Rev 2001; 65: 232-60.
4. Frana TS, Carlson SA, Griffith RW. Relative distribution and conservation of genes encoding aminoglycoside-modifying enzymes in Salmonella enterica serotype Typhimurium phage type DT104. Appl Environ Microbiol 2001; 67: 445-8.
5. Skold O. Resistance to trimethoprim and sulfonamides. Vet Res 2001; 32: 261-73.
6. Threlfall EJ. Antimicrobial drug resistance in Salmonella: problems and perspectives in food-and water-borne infections. FEMS Microbiol Rev 2002; 26: 141-8.
7. Su LH, Chiu CH, Chu C et al. Antimicrobial resistance in nontyphoid Salmonella serotypes: a global challenge. Clin Infect Dis 2004; 39: 546-51.
8. Rayamajhi N, Kang SG, Kang ML et al. Assessment of antibiotic resistance phenotype and integrons in Salmonella enterica serovar Typhimurium isolated from swine. J Vet Med Sci 2008; 70: 1133-7.
9. Gebreyes WA, Altier C. Molecular characterization of multidrugresistant Salmonella enterica subsp. enterica serovar Typhimurium isolates from swine. J Clin Microbiol 2002; 40: 2813-22.
10. Batchelor M, Hopkins KL, Liebana E et al. Development of a miniaturised microarray-based assay for the rapid identification of antimicrobial resistance genes in Gram-negative bacteria. Int J Antimicrob Agents 2008; 31: 440-51.
11. Hopkins KL, Batchelor MJ, Anjum M et al. Comparison of antimicrobial resistance genes in nontyphoidal salmonellae of serotypes Enteritidis, Hadar, and Virchow from humans and food-producing animals in England and Wales. Microb Drug Resist 2007; 13: 281-8.
12. EFSA. Report on the analysis of the baseline study on the prevalence of Salmonella in holdings of laying hen flocks of Gallus gallus. EFSA J 2007; 97: 1-84.
13. EFSA. Report of the Task Force on Zoonoses Data Collection on the analysis of the baseline survey on the prevalence of Salmonella in turkey flocks, in the EU, 2006-2007-Part A: Salmonella prevalence estimates. EFSA J 2008; 134: 1-91.
14. EFSA. Report of the Task Force on Zoonoses Data Collection on the analysis of the baseline survey on the prevalence of Salmonella in slaughter pigs, in the EU, 2006-2007. EFSA J 2008; 135: 1-111.
15. EFSA. Report of the Task Force on Zoonoses Data Collection on the analysis of the baseline survey on the prevalence of Salmonella in broiler flocks of Gallus gallus, in the EU, 2005-2006-Part A: Salmonella prevalence estimates. EFSA J 2007; 98: 1-85.
16. National Committee for Clinical Laboratory Standards. Performance Standards for Antimicrobial Disk and Dilution Susceptibility Tests for Bacteria Isolated from Animals: Approved Standard M31-A. NCCLS, Wayne, PA, USA, 1999.
17. Anjum MF, Mafura M, Slickers P et al. Pathotyping Escherichia coli by using miniaturized DNA microarrays. Appl Environ Microbiol 2007; 73: 5692-7.
18. Liebana E, Gibbs M, Clouting C et al. Characterization of b-lactamases responsible for resistance to extended-spectrum cephalosporins in Escherichia coli and Salmonella enterica strains from food-producing animals in the United Kingdom. Microb Drug Resist 2004; 10: 1-9.
19. Kado CI, Liu ST. Rapid procedure for detection and isolation of large and small plasmids. J Bacteriol 1981; 145: 1365-73.
20. Eaves DJ, Randall L, Gray DT et al. Prevalence of mutations within the quinolone resistance-determining region of gyrA, gyrB, parC, and parE and association with antibiotic resistance in quinolone-resistant Salmonella enterica. Antimicrob Agents Chemother 2004; 48: 4012-5.
21. Boyd DA, Peters GA, Ng L et al. Partial characterization of a genomic island associated with the multidrug resistance region of Salmonella enterica Typhymurium DT104. FEMS Microbiol Lett 2000; 189: 285-91.
22. Cavaco LM, Aarestrup FM. Evaluation of quinolones for use in detection of determinants of acquired quinolone resistance, including the new transmissible resistance mechanisms qnrA, qnrB, qnrS, and aac(6′)Ib-cr, in Escherichia coli and Salmonella enterica and determinations of wild-type distributions. J Clin Microbiol 2009; 47: 2751-8.
23. Wiedemann B, Heisig P. Mechanisms of quinolone resistance. Infection 1994; 22 Suppl 2: S73-9.
24. Rodriguez-Martinez JM, Cano ME, Velasco C et al. Plasmid-mediated quinolone resistance: an update. J Infect Chemother 2010; doi:10.1007/s10156-010-0120-2.
25. Boyd D, Cloeckaert A, Chaslus-Dancla E et al. Characterization of variant Salmonella genomic island 1 multidrug resistance regions from serovars Typhimurium DT104 and Agona. Antimicrob Agents Chemother 2002; 46: 1714-22.
26. Enne VI, Bennett PM. Methods to determine antibiotic resistance gene silencing. Methods Mol Biol 2010; 642: 29-44.
27. Meakins S, Fisher IS, Berghold C et al. Antimicrobial drug resistance in human nontyphoidal Salmonella isolates in Europe 2000-2004: a report from the Enter-net International Surveillance Network. Microb Drug Resist 2008; 14: 31-5.
28. Jacoby GA, Walsh KE, Walker VJ. Identification of extended-spectrum, AmpC, and carbapenem-hydrolyzing b-lactamases in Escherichia coli and Klebsiella pneumoniae by disk tests. J Clin Microbiol 2006; 44: 1971-6.
29. Hopkins KL, Kirchner M, Guerra B et al. Multiresistant Salmonella enterica serovar 4,[5],12:i:-in Europe: a new pandemic strain? Euro Surveill 2010; 15: pii=19580.
30. Lucarelli C, Dionisi AM, Torpdahl M et al. Evidence for a second genomic island conferring multidrug resistance in a clonal group of strains of Salmonella enterica serovar Typhimurium and its monophasic variant circulating in Italy, Denmark, and the United Kingdom. J Clin Microbiol 2010; 48: 2103-9.
31. Boyd D, Peters GA, Cloeckaert A et al. Complete nucleotide sequence of a 43-kilobase genomic island associated with the multidrug resistance region of Salmonella enterica serovar Typhimurium DT104 and its identification in phage type DT120 and serovar Agona. J Bacteriol 2001; 183: 5725-32.
32. Doublet B, Weill FX, Fabre L et al. Variant Salmonella genomic island 1 antibiotic resistance gene cluster containing a novel 3′-N-aminoglycoside acetyltransferase gene cassette, aac(3)-Id, in Salmonella enterica serovar Newport. Antimicrob Agents Chemother 2004; 48: 3806-12.
33. Doublet B, Lailler R, Meunier D et al. Variant Salmonella genomic island 1 antibiotic resistance gene cluster in Salmonella enterica serovar Albany. Emerg Infect Dis 2003; 9: 585-91.
34. Ebner P, Garner K, Mathew A. Class 1 integrons in various Salmonella enterica serovars isolated from animals and identification of genomic island SGI1 in Salmonella enterica var. Meleagridis. J Antimicrob Chemother 2004; 53: 1004-9.
35. Vinue L, Saenz Y, Rojo-Bezares B et al. Genetic environment of sul genes and characterisation of integrons in Escherichia coli isolates of blood origin in a Spanish hospital. Int J Antimicrob Agents 2010; 35: 492-6.
36. Saenz Y, Vinue L, Ruiz E et al. Class 1 integrons lacking qacED1 and sul1 genes in Escherichia coli isolates of food, animal and human origins. Vet Microbiol 2010; 144: 493-7.
37. Carattoli A, Bertini A, Villa L et al. Identification of plasmids by PCR-based replicon typing. J Microbiol Methods 2005; 63: 219-28.
38. Guardabassi L, Courvalin P. Modesofantimicrobial action andmechanisms of bacterial resistances. In: Aarestrup F, ed. Antimicrobial Resistance in Bacteria of Animal Origin.Washington, DC: ASM Press, 2006; 1-19.