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Volumn 12, Issue SUPPL. 1, 2011, Pages

PicXAA-R: Efficient structural alignment of multiple RNA sequences using a greedy approach

Author keywords

[No Author keywords available]

Indexed keywords

GREEDY APPROACHES; LIVING ORGANISMS; LOCAL SIMILARITY; MULTIPLE SEQUENCES; NON-CODING RNAS; PROTEIN SEQUENCE ALIGNMENTS; RNA SEQUENCES; STRUCTURAL ALIGNMENTS;

EID: 79951529676     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-12-S1-S38     Document Type: Article
Times cited : (18)

References (48)
  • 1
    • 0035656688 scopus 로고    scopus 로고
    • Non-coding RNA genes and the modern RNA world
    • 10.1038/35103511, 11733745
    • Eddy SR. Non-coding RNA genes and the modern RNA world. Nat. Rev. Genet. 2001, 2:919-929. 10.1038/35103511, 11733745.
    • (2001) Nat. Rev. Genet. , vol.2 , pp. 919-929
    • Eddy, S.R.1
  • 2
    • 0037123632 scopus 로고    scopus 로고
    • An expanding universe of noncoding RNAs
    • 10.1126/science.1072249, 12016301
    • Storz G. An expanding universe of noncoding RNAs. Science 2002, 296:1260-1263. 10.1126/science.1072249, 12016301.
    • (2002) Science , vol.296 , pp. 1260-1263
    • Storz, G.1
  • 3
    • 33845474731 scopus 로고    scopus 로고
    • Non-coding RNAs: lost in translation?
    • 10.1016/j.gene.2006.09.028, 17113247
    • Costa FF. Non-coding RNAs: lost in translation?. Gene 2007, 386:1-10. 10.1016/j.gene.2006.09.028, 17113247.
    • (2007) Gene , vol.386 , pp. 1-10
    • Costa, F.F.1
  • 4
    • 0022146059 scopus 로고
    • Simultaneous Solution of the RNA Folding, Alignment and Protosequence Problems
    • Sankoff D. Simultaneous Solution of the RNA Folding, Alignment and Protosequence Problems. SIAM Journal on Applied Mathematics 1985, 45(5):810-825.
    • (1985) SIAM Journal on Applied Mathematics , vol.45 , Issue.5 , pp. 810-825
    • Sankoff, D.1
  • 5
    • 0035873307 scopus 로고    scopus 로고
    • Discovering common stem-loop motifs in unaligned RNA sequences
    • 10.1093/nar/29.10.2135, 55461, 11353083
    • Gorodkin J, Stricklin SL, Stormo GD. Discovering common stem-loop motifs in unaligned RNA sequences. Nucleic Acids Res. 2001, 29:2135-2144. 10.1093/nar/29.10.2135, 55461, 11353083.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 2135-2144
    • Gorodkin, J.1    Stricklin, S.L.2    Stormo, G.D.3
  • 6
    • 16344363338 scopus 로고    scopus 로고
    • Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%
    • 10.1093/bioinformatics/bti279, 15657094
    • Havgaard JH, Lyngso RB, Stormo GD, Gorodkin J. Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%. Bioinformatics 2005, 21:1815-1824. 10.1093/bioinformatics/bti279, 15657094.
    • (2005) Bioinformatics , vol.21 , pp. 1815-1824
    • Havgaard, J.H.1    Lyngso, R.B.2    Stormo, G.D.3    Gorodkin, J.4
  • 7
    • 35748971022 scopus 로고    scopus 로고
    • Fast pairwise structural RNA alignments by pruning of the dynamical programming matrix
    • 10.1371/journal.pcbi.0030193, 2014794, 17937495
    • Havgaard JH, Torarinsson E, Gorodkin J. Fast pairwise structural RNA alignments by pruning of the dynamical programming matrix. PLoS Comput. Biol. 2007, 3:1896-1908. 10.1371/journal.pcbi.0030193, 2014794, 17937495.
    • (2007) PLoS Comput. Biol. , vol.3 , pp. 1896-1908
    • Havgaard, J.H.1    Torarinsson, E.2    Gorodkin, J.3
  • 8
    • 0036295198 scopus 로고    scopus 로고
    • Dynalign: an algorithm for finding the secondary structure common to two RNA sequences
    • 10.1006/jmbi.2001.5351, 11902836
    • Mathews DH, Turner DH. Dynalign: an algorithm for finding the secondary structure common to two RNA sequences. J. Mol. Biol. 2002, 317:191-203. 10.1006/jmbi.2001.5351, 11902836.
    • (2002) J. Mol. Biol. , vol.317 , pp. 191-203
    • Mathews, D.H.1    Turner, D.H.2
  • 9
    • 19544374354 scopus 로고    scopus 로고
    • Predicting a set of minimal free energy RNA secondary structures common to two sequences
    • 10.1093/bioinformatics/bti349, 15731207
    • Mathews DH. Predicting a set of minimal free energy RNA secondary structures common to two sequences. Bioinformatics 2005, 21:2246-2253. 10.1093/bioinformatics/bti349, 15731207.
    • (2005) Bioinformatics , vol.21 , pp. 2246-2253
    • Mathews, D.H.1
  • 10
    • 25444433586 scopus 로고    scopus 로고
    • Accelerated probabilistic inference of RNA structure evolution
    • 10.1186/1471-2105-6-73, 1090553, 15790387
    • Holmes I. Accelerated probabilistic inference of RNA structure evolution. BMC Bioinformatics 2005, 6:73. 10.1186/1471-2105-6-73, 1090553, 15790387.
    • (2005) BMC Bioinformatics , vol.6 , pp. 73
    • Holmes, I.1
  • 11
    • 13244260785 scopus 로고    scopus 로고
    • Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction
    • 10.1186/1471-2105-5-71, 442121, 15180907
    • Dowell RD, Eddy SR. Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction. BMC Bioinformatics 2004, 5:71. 10.1186/1471-2105-5-71, 442121, 15180907.
    • (2004) BMC Bioinformatics , vol.5 , pp. 71
    • Dowell, R.D.1    Eddy, S.R.2
  • 12
    • 34547844102 scopus 로고    scopus 로고
    • Murlet: a practical multiple alignment tool for structural RNA sequences
    • 10.1093/bioinformatics/btm146, 17459961
    • Kiryu H, Tabei Y, Kin T, Asai K. Murlet: a practical multiple alignment tool for structural RNA sequences. Bioinformatics 2007, 23:1588-1598. 10.1093/bioinformatics/btm146, 17459961.
    • (2007) Bioinformatics , vol.23 , pp. 1588-1598
    • Kiryu, H.1    Tabei, Y.2    Kin, T.3    Asai, K.4
  • 13
    • 46249114849 scopus 로고    scopus 로고
    • A max-margin model for efficient simultaneous alignment and folding of RNA sequences
    • Do CB, Foo CS, Batzoglou S. A max-margin model for efficient simultaneous alignment and folding of RNA sequences. Bioinformatics 2008, 24:68-76.
    • (2008) Bioinformatics , vol.24 , pp. 68-76
    • Do, C.B.1    Foo, C.S.2    Batzoglou, S.3
  • 14
    • 42449109109 scopus 로고    scopus 로고
    • PARTS: probabilistic alignment for RNA joinT secondary structure prediction
    • 10.1093/nar/gkn043, 2367733, 18304945
    • Harmanci AO, Sharma G, Mathews DH. PARTS: probabilistic alignment for RNA joinT secondary structure prediction. Nucleic Acids Res. 2008, 36:2406-2417. 10.1093/nar/gkn043, 2367733, 18304945.
    • (2008) Nucleic Acids Res. , vol.36 , pp. 2406-2417
    • Harmanci, A.O.1    Sharma, G.2    Mathews, D.H.3
  • 15
    • 33745612985 scopus 로고    scopus 로고
    • STRAL: progressive alignment of non-coding RNA using base pairing probability vectors in quadratic time
    • 10.1093/bioinformatics/btl142, 16613908
    • Dalli D, Wilm A, Mainz I, Steger G. STRAL: progressive alignment of non-coding RNA using base pairing probability vectors in quadratic time. Bioinformatics 2006, 22:1593-1599. 10.1093/bioinformatics/btl142, 16613908.
    • (2006) Bioinformatics , vol.22 , pp. 1593-1599
    • Dalli, D.1    Wilm, A.2    Mainz, I.3    Steger, G.4
  • 16
    • 34247598415 scopus 로고    scopus 로고
    • Inferring noncoding RNA families and classes by means of genome-scale structure-based clustering
    • 10.1371/journal.pcbi.0030065, 1851984, 17432929
    • Will S, Reiche K, Hofacker IL, Stadler PF, Backofen R. Inferring noncoding RNA families and classes by means of genome-scale structure-based clustering. PLoS Comput. Biol 2007, 3:e65. 10.1371/journal.pcbi.0030065, 1851984, 17432929.
    • (2007) PLoS Comput. Biol , vol.3
    • Will, S.1    Reiche, K.2    Hofacker, I.L.3    Stadler, P.F.4    Backofen, R.5
  • 17
    • 75849160582 scopus 로고    scopus 로고
    • CentroidAlign: fast and accurate aligner for structured RNAs by maximizing expected sum-of-pairs score
    • 10.1093/bioinformatics/btp580, 19808876
    • Hamada M, Sato K, Kiryu H, Mituyama T, Asai K. CentroidAlign: fast and accurate aligner for structured RNAs by maximizing expected sum-of-pairs score. Bioinformatics 2009, 25:3236-3243. 10.1093/bioinformatics/btp580, 19808876.
    • (2009) Bioinformatics , vol.25 , pp. 3236-3243
    • Hamada, M.1    Sato, K.2    Kiryu, H.3    Mituyama, T.4    Asai, K.5
  • 18
    • 5044242515 scopus 로고    scopus 로고
    • Alignment of RNA base pairing probability matrices
    • 10.1093/bioinformatics/bth229, 15073017
    • Hofacker IL, Bernhart SH, Stadler PF. Alignment of RNA base pairing probability matrices. Bioinformatics 2004, 20:2222-2227. 10.1093/bioinformatics/bth229, 15073017.
    • (2004) Bioinformatics , vol.20 , pp. 2222-2227
    • Hofacker, I.L.1    Bernhart, S.H.2    Stadler, P.F.3
  • 19
    • 33744945759 scopus 로고    scopus 로고
    • Identification of consensus RNA secondary structures using suffix arrays
    • 10.1186/1471-2105-7-244, 1475642, 16677380
    • Anwar M, Nguyen T, Turcotte M. Identification of consensus RNA secondary structures using suffix arrays. BMC Bioinformatics 2006, 7:244. 10.1186/1471-2105-7-244, 1475642, 16677380.
    • (2006) BMC Bioinformatics , vol.7 , pp. 244
    • Anwar, M.1    Nguyen, T.2    Turcotte, M.3
  • 20
    • 41749122381 scopus 로고    scopus 로고
    • A fast structural multiple alignment method for long RNA sequences
    • 10.1186/1471-2105-9-33, 2375124, 18215258
    • Tabei Y, Kiryu H, Kin T, Asai K. A fast structural multiple alignment method for long RNA sequences. BMC Bioinformatics 2008, 9:33. 10.1186/1471-2105-9-33, 2375124, 18215258.
    • (2008) BMC Bioinformatics , vol.9 , pp. 33
    • Tabei, Y.1    Kiryu, H.2    Kin, T.3    Asai, K.4
  • 21
    • 44349140636 scopus 로고    scopus 로고
    • R-Coffee: a method for multiple alignment of non-coding RNA
    • 10.1093/nar/gkn174, 2396437, 18420654
    • Wilm A, Higgins DG, Notredame C. R-Coffee: a method for multiple alignment of non-coding RNA. Nucleic Acids Res. 2008, 36:e52. 10.1093/nar/gkn174, 2396437, 18420654.
    • (2008) Nucleic Acids Res. , vol.36
    • Wilm, A.1    Higgins, D.G.2    Notredame, C.3
  • 22
    • 48449091838 scopus 로고    scopus 로고
    • R-Coffee: a web server for accurately aligning noncoding RNA sequences
    • 10.1093/nar/gkn278, 2447777, 18483080
    • Moretti S, Wilm A, Higgins DG, Xenarios I, Notredame C. R-Coffee: a web server for accurately aligning noncoding RNA sequences. Nucleic Acids Res. 2008, 36:W10-13. 10.1093/nar/gkn278, 2447777, 18483080.
    • (2008) Nucleic Acids Res. , vol.36
    • Moretti, S.1    Wilm, A.2    Higgins, D.G.3    Xenarios, I.4    Notredame, C.5
  • 23
    • 34548348538 scopus 로고    scopus 로고
    • Accurate multiple sequence-structure alignment of RNA sequences using combinatorial optimization
    • 10.1186/1471-2105-8-271, 1955456, 17662141
    • Bauer M, Klau GW, Reinert K. Accurate multiple sequence-structure alignment of RNA sequences using combinatorial optimization. BMC Bioinformatics 2007, 8:271. 10.1186/1471-2105-8-271, 1955456, 17662141.
    • (2007) BMC Bioinformatics , vol.8 , pp. 271
    • Bauer, M.1    Klau, G.W.2    Reinert, K.3
  • 24
    • 24044519380 scopus 로고    scopus 로고
    • MARNA: multiple alignment and consensus structure prediction of RNAs based on sequence structure comparisons
    • 10.1093/bioinformatics/bti550, 15972285
    • Siebert S, Backofen R. MARNA: multiple alignment and consensus structure prediction of RNAs based on sequence structure comparisons. Bioinformatics 2005, 21:3352-3359. 10.1093/bioinformatics/bti550, 15972285.
    • (2005) Bioinformatics , vol.21 , pp. 3352-3359
    • Siebert, S.1    Backofen, R.2
  • 25
    • 0034623005 scopus 로고    scopus 로고
    • T-Coffee: A novel method for fast and accurate multiple sequence alignment
    • 10.1006/jmbi.2000.4042, 10964570
    • Notredame C, Higgins DG, Heringa J. T-Coffee: A novel method for fast and accurate multiple sequence alignment. J. Mol. Biol. 2000, 302:205-217. 10.1006/jmbi.2000.4042, 10964570.
    • (2000) J. Mol. Biol. , vol.302 , pp. 205-217
    • Notredame, C.1    Higgins, D.G.2    Heringa, J.3
  • 26
    • 44149125756 scopus 로고    scopus 로고
    • Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework
    • 10.1186/1471-2105-9-212, 2387179, 18439255
    • Katoh K, Toh H. Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework. BMC Bioinformatics 2008, 9:212. 10.1186/1471-2105-9-212, 2387179, 18439255.
    • (2008) BMC Bioinformatics , vol.9 , pp. 212
    • Katoh, K.1    Toh, H.2
  • 27
    • 34548131258 scopus 로고    scopus 로고
    • RNA Sampler: a new sampling based algorithm for common RNA secondary structure prediction and structural alignment
    • 10.1093/bioinformatics/btm272, 17537756
    • Xu X, Ji Y, Stormo GD. RNA Sampler: a new sampling based algorithm for common RNA secondary structure prediction and structural alignment. Bioinformatics 2007, 23:1883-1891. 10.1093/bioinformatics/btm272, 17537756.
    • (2007) Bioinformatics , vol.23 , pp. 1883-1891
    • Xu, X.1    Ji, Y.2    Stormo, G.D.3
  • 28
    • 36949011603 scopus 로고    scopus 로고
    • MASTR: multiple alignment and structure prediction of non-coding RNAs using simulated annealing
    • 10.1093/bioinformatics/btm525, 18006551
    • Lindgreen S, Gardner PP, Krogh A. MASTR: multiple alignment and structure prediction of non-coding RNAs using simulated annealing. Bioinformatics 2007, 23:3304-3311. 10.1093/bioinformatics/btm525, 18006551.
    • (2007) Bioinformatics , vol.23 , pp. 3304-3311
    • Lindgreen, S.1    Gardner, P.P.2    Krogh, A.3
  • 29
    • 56649119162 scopus 로고    scopus 로고
    • Specific alignment of structured RNA: stochastic grammars and sequence annealing
    • 10.1093/bioinformatics/btn495, 2732270, 18796475
    • Bradley RK, Pachter L, Holmes I. Specific alignment of structured RNA: stochastic grammars and sequence annealing. Bioinformatics 2008, 24:2677-2683. 10.1093/bioinformatics/btn495, 2732270, 18796475.
    • (2008) Bioinformatics , vol.24 , pp. 2677-2683
    • Bradley, R.K.1    Pachter, L.2    Holmes, I.3
  • 30
    • 14644430471 scopus 로고    scopus 로고
    • ProbCons: Probabilistic consistency-based multiple sequence alignment
    • 10.1101/gr.2821705, 546535, 15687296
    • Do CB, Mahabhashyam MS, Brudno M, Batzoglou S. ProbCons: Probabilistic consistency-based multiple sequence alignment. Genome Res. 2005, 15:330-340. 10.1101/gr.2821705, 546535, 15687296.
    • (2005) Genome Res. , vol.15 , pp. 330-340
    • Do, C.B.1    Mahabhashyam, M.S.2    Brudno, M.3    Batzoglou, S.4
  • 31
    • 33751004142 scopus 로고    scopus 로고
    • Probalign: multiple sequence alignment using partition function posterior probabilities
    • 10.1093/bioinformatics/btl472, 16954142
    • Roshan U, Livesay DR. Probalign: multiple sequence alignment using partition function posterior probabilities. Bioinformatics 2006, 22:2715-2721. 10.1093/bioinformatics/btl472, 16954142.
    • (2006) Bioinformatics , vol.22 , pp. 2715-2721
    • Roshan, U.1    Livesay, D.R.2
  • 32
    • 59549102237 scopus 로고    scopus 로고
    • Sequence progressive alignment, a framework for practical large-scale probabilistic consistency alignment
    • 10.1093/bioinformatics/btn630, 19056777
    • Paten B, Herrero J, Beal K, Birney E. Sequence progressive alignment, a framework for practical large-scale probabilistic consistency alignment. Bioinformatics 2009, 25:295-301. 10.1093/bioinformatics/btn630, 19056777.
    • (2009) Bioinformatics , vol.25 , pp. 295-301
    • Paten, B.1    Herrero, J.2    Beal, K.3    Birney, E.4
  • 34
    • 77956098140 scopus 로고    scopus 로고
    • PicXAA: greedy probabilistic construction of maximum expected accuracy alignment of multiple sequences
    • 10.1093/nar/gkq255, 2926610, 20413579
    • Sahraeian SM, Yoon BJ. PicXAA: greedy probabilistic construction of maximum expected accuracy alignment of multiple sequences. Nucleic Acids Res. 2010, 38:4917-4928. 10.1093/nar/gkq255, 2926610, 20413579.
    • (2010) Nucleic Acids Res. , vol.38 , pp. 4917-4928
    • Sahraeian, S.M.1    Yoon, B.J.2
  • 35
    • 33846659941 scopus 로고    scopus 로고
    • Multiple alignment by sequence annealing
    • 10.1093/bioinformatics/btl311, 17237099
    • Schwartz AS, Pachter L. Multiple alignment by sequence annealing. Bioinformatics 2007, 23:e24-29. 10.1093/bioinformatics/btl311, 17237099.
    • (2007) Bioinformatics , vol.23
    • Schwartz, A.S.1    Pachter, L.2
  • 37
    • 70349131635 scopus 로고    scopus 로고
    • Improved RNA secondary structure prediction by maximizing expected pair accuracy
    • 10.1261/rna.1643609, 2743040, 19703939
    • Lu ZJ, Gloor JW, Mathews DH. Improved RNA secondary structure prediction by maximizing expected pair accuracy. RNA 2009, 15:1805-1813. 10.1261/rna.1643609, 2743040, 19703939.
    • (2009) RNA , vol.15 , pp. 1805-1813
    • Lu, Z.J.1    Gloor, J.W.2    Mathews, D.H.3
  • 38
    • 33847262911 scopus 로고    scopus 로고
    • Robust prediction of consensus secondary structures using averaged base pairing probability matrices
    • 10.1093/bioinformatics/btl636, 17182698
    • Kiryu H, Kin T, Asai K. Robust prediction of consensus secondary structures using averaged base pairing probability matrices. Bioinformatics 2007, 23:434-441. 10.1093/bioinformatics/btl636, 17182698.
    • (2007) Bioinformatics , vol.23 , pp. 434-441
    • Kiryu, H.1    Kin, T.2    Asai, K.3
  • 39
    • 33747874580 scopus 로고    scopus 로고
    • CONTRAfold: RNA secondary structure prediction without physics-based models
    • 10.1093/bioinformatics/btl246, 16873527
    • Do CB, Woods DA, Batzoglou S. CONTRAfold: RNA secondary structure prediction without physics-based models. Bioinformatics 2006, 22:e90-98. 10.1093/bioinformatics/btl246, 16873527.
    • (2006) Bioinformatics , vol.22
    • Do, C.B.1    Woods, D.A.2    Batzoglou, S.3
  • 40
    • 0003516147 scopus 로고    scopus 로고
    • Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids
    • Cambridge University Press
    • Durbin R, Eddy SR, Krogh A, Mitchison G. Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids. 1998, Cambridge University Press.
    • (1998)
    • Durbin, R.1    Eddy, S.R.2    Krogh, A.3    Mitchison, G.4
  • 41
    • 0025264854 scopus 로고
    • The equilibrium partition function and base pair binding probabilities for RNA secondary structure
    • 10.1002/bip.360290621, 1695107
    • McCaskill JS. The equilibrium partition function and base pair binding probabilities for RNA secondary structure. Biopolymers 1990, 29:1105-1119. 10.1002/bip.360290621, 1695107.
    • (1990) Biopolymers , vol.29 , pp. 1105-1119
    • McCaskill, J.S.1
  • 42
    • 66349124254 scopus 로고    scopus 로고
    • Predictions of RNA secondary structure by combining homologous sequence information
    • 10.1093/bioinformatics/btp228, 2687982, 19478007
    • Hamada M, Sato K, Kiryu H, Mituyama T, Asai K. Predictions of RNA secondary structure by combining homologous sequence information. Bioinformatics 2009, 25:i330-338. 10.1093/bioinformatics/btp228, 2687982, 19478007.
    • (2009) Bioinformatics , vol.25
    • Hamada, M.1    Sato, K.2    Kiryu, H.3    Mituyama, T.4    Asai, K.5
  • 43
    • 34248374330 scopus 로고    scopus 로고
    • An enhanced RNA alignment benchmark for sequence alignment programs
    • 10.1186/1748-7188-1-19, 1635699, 17062125
    • Wilm A, Mainz I, Steger G. An enhanced RNA alignment benchmark for sequence alignment programs. Algorithms Mol Biol 2006, 1:19. 10.1186/1748-7188-1-19, 1635699, 17062125.
    • (2006) Algorithms Mol Biol , vol.1 , pp. 19
    • Wilm, A.1    Mainz, I.2    Steger, G.3
  • 44
    • 36949040355 scopus 로고    scopus 로고
    • Biclustering as a method for RNA local multiple sequence alignment
    • 10.1093/bioinformatics/btm485, 2228335, 17921494
    • Wang S, Gutell RR, Miranker DP. Biclustering as a method for RNA local multiple sequence alignment. Bioinformatics 2007, 23:3289-3296. 10.1093/bioinformatics/btm485, 2228335, 17921494.
    • (2007) Bioinformatics , vol.23 , pp. 3289-3296
    • Wang, S.1    Gutell, R.R.2    Miranker, D.P.3
  • 45
    • 14044272835 scopus 로고    scopus 로고
    • Fast and reliable prediction of noncoding RNAs
    • 10.1073/pnas.0409169102, 548974, 15665081
    • Washietl S, Hofacker IL, Stadler PF. Fast and reliable prediction of noncoding RNAs. Proc. Natl. Acad. Sci. U.S.A. 2005, 102:2454-2459. 10.1073/pnas.0409169102, 548974, 15665081.
    • (2005) Proc. Natl. Acad. Sci. U.S.A. , vol.102 , pp. 2454-2459
    • Washietl, S.1    Hofacker, I.L.2    Stadler, P.F.3
  • 46
    • 0036301332 scopus 로고    scopus 로고
    • Secondary structure prediction for aligned RNA sequences
    • 10.1016/S0022-2836(02)00308-X, 12079347
    • Hofacker IL, Fekete M, Stadler PF. Secondary structure prediction for aligned RNA sequences. J. Mol. Biol. 2002, 319:1059-1066. 10.1016/S0022-2836(02)00308-X, 12079347.
    • (2002) J. Mol. Biol. , vol.319 , pp. 1059-1066
    • Hofacker, I.L.1    Fekete, M.2    Stadler, P.F.3
  • 47
    • 0043123153 scopus 로고    scopus 로고
    • Vienna RNA secondary structure server
    • 10.1093/nar/gkg599, 169005, 12824340
    • Hofacker IL. Vienna RNA secondary structure server. Nucleic Acids Res. 2003, 31:3429-3431. 10.1093/nar/gkg599, 169005, 12824340.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3429-3431
    • Hofacker, I.L.1


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