A region in the C-terminal domain of ribosomal protein SA required for binding of SA to the human 40S ribosomal subunit

Biochimie

Volumn 93, Issue 3, 2011, Pages 612-617

  Malygin, Alexey A ^a   Babaylova, Elena S ^a   Loktev, Valery B ^b   Karpova, Galina G ^a  

^a INSTITUTE OF CHEMICAL BIOLOGY AND FUNDAMENTAL MEDICINE   (Russian Federation)

^b STATE RESEARCH CENTER OF VIROLOGY AND BIOTECHNOLOGY VECTOR   (Russian Federation)

Author keywords

18S rRNA hairpin 40; Hydroxyl radical footprinting of ribosomal subunit; Ribosomal protein p40 CTD; Ribosomal protein SA

Indexed keywords

AMINO ACID; HYDROXYL RADICAL; LAMININ RECEPTOR; MUTANT PROTEIN; NUCLEOTIDE DERIVATIVE; RIBOSOMAL PROTEIN S2P; RIBOSOMAL PROTEIN SA; RIBOSOME PROTEIN; RNA 18S; UNCLASSIFIED DRUG;

40S RIBOSOMAL SUBUNIT; ARTICLE; CARBOXY TERMINAL SEQUENCE; CRYOELECTRON MICROSCOPY; MOLECULAR MODEL; PROTEIN DOMAIN; PROTEIN PROTEIN INTERACTION; RIBOSOME SUBUNIT; RNA SEQUENCE;

AMINO ACID SEQUENCE; BASE SEQUENCE; BINDING SITES; HUMANS; HYDROXYL RADICAL; MOLECULAR SEQUENCE DATA; PROTEIN BINDING; PROTEIN STRUCTURE, TERTIARY; RECEPTORS, LAMININ; RIBOSOMAL PROTEINS; RIBOSOME SUBUNITS, SMALL, EUKARYOTIC; RNA, RIBOSOMAL, 18S; SEQUENCE DELETION; SPECIES SPECIFICITY;

BACTERIA (MICROORGANISMS); EUKARYOTA; MAMMALIA;

EID: 79951515012     PISSN: 03009084     EISSN: 61831638     Source Type: Journal    
DOI: 10.1016/j.biochi.2010.12.005     Document Type: Article

References (29)

1. J.R. Warner, and K.B. McIntosh How common are extraribosomal functions of ribosomal proteins? Mol. Cell. 34 2009 3 11
2. H. Lesot, U. Kuhl, and K.V. Mark Isolation of a laminin-binding protein from muscle cell membranes EMBO. J. 2 1983 861 865
3. D. Auth, and G. Brawerman A 33 kDa polypeptide with homology to the laminin receptor: component of translation machinery Proc. Natl. Acad. Sci. U S A 89 1992 4368 4372
4. E. Ardini, G. Pesole, E. Tagliabue, A. Magnifico, V. Castronovo, M.E. Sobel, M.I. Colnaghi, and S. Menard The 67 kDa laminin receptor originated from a ribosomal protein that acquired a dual function during evolution Mol. Biol. Evol. 15 1998 1017 1025 (Pubitemid 28364455)
5. R. Rieger, F. Edenhofer, C.I. Lasmezas, and S. Weiss The human 37 kDa laminin receptor precursor interacts with the prion protein in eukaryotic cells Nat. Med. 3 1997 1383 1388 (Pubitemid 28011039)
6. J. Nelson, N.V. McFerran, G. Pivato, E. Chambers, C. Doherty, D. Steele, and D.J. Timson The 67 kDa laminin receptor: structure, function and role in disease Biosci. Rep. 28 2008 33 48
7. D.J. Taylor, B. Devkota, A.D. Huang, M. Topf, E. Narayanan, A. Sali, S.C. Harvey, and J. Frank Comprehensive molecular structure of the eukaryotic ribosome Structure 17 2009 1591 1604
8. A. Ben-Shem, L. Jenner, G. Yusupova, and M. Yusupov Crystal structure of the eukaryotic ribosome Science 330 2010 1203 1209
9. M. Garcia-Hernandez, E. Davies, T.I. Baskin, and P.E. Staswick Association of plant p40 protein with ribosomes is enhanced when polyribosomes form during periods of active tissue growth Plant. Physiol. 111 1996 559 568 (Pubitemid 126640501)
10. A.A. Malygin, E.I. Bondarenko, V.A. Ivanisenko, E.V. Protopopova, G.G. Karpova, and V.B. Loktev C-terminal fragment of human laminin-binding protein contains a receptor domain for Venezuelan equine encephalitis and tick-borne encephalitis viruses Biochem (Mosc). 74 2009 1328 1336
11. L. Valasek, A.A. Mathew, B.S. Shin, K.H. Nielsen, B. Szamecz, and A.G. Hinnebusch The yeast eIF3 subunits TIF32/a, NIP1/c, and eIF5 make critical connections with the 40S ribosome in vivo Genes. Dev. 17 2003 786 799 (Pubitemid 36359196)
12. A.A. Malygin, Z.V. Bochkaeva, E.I. Bondarenko, O.A. Kosinova, V.B. Loktev, I.N. Shatsky, and G. Karpova Binding of the IRES of hepatitis C virus RNA to the 40S ribosomal subunit: role of protein p40 Mol. Biol. (Mosk). 43 2009 1070 1076
13. E. Laletina, D. Graifer, A. Malygin, A. Ivanov, I. Shatsky, and G. Karpova Proteins surrounding hairpin IIIe of the hepatitis C virus internal ribosome entry site on the human 40S ribosomal subunit Nucleic. Acids. Res. 34 2006 2027 2036 (Pubitemid 44314201)
14. E. Babailova, D. Graifer, A. Malygin, J. Stahl, I. Shatsky, and G. Karpova Positioning of subdomain IIId and apical loop of domain II of the hepatitis C on the human 40S ribosome Nucleic. Acids. Res. 37 2009 1141 1151
15. G. Yusupova, L. Jenner, B. Rees, D. Moras, and M. Yusupov Structural basis for messenger RNA movement on the ribosome Nature 444 2006 391 394 (Pubitemid 44764117)
16. P. Chandramouli, M. Topf, J.F. Menetret, N. Eswar, J.J. Cannone, R.R. Gutell, A. Sali, and C.W. Akey Structure of the mammalian 80S ribosome at 8.7 A resolution Structure 16 2008 535 548 (Pubitemid 351467748)
17. O.A. Kosinova, A.A. Malygin, E.S. Babailova, and G.G. Karpova Binding of human ribosomal protein p40 and its truncated mutants to the small ribosomal subunit Mol. Biol. (Mosk.) 42 2008 1023 1029
18. A. Malygin, O. Baranovskaya, A. Ivanov, and G. Karpova Expression and purification of human ribosomal proteins S3, S5, S10, S19, and S26 Protein. Expr. Purif. 28 2003 57 62 (Pubitemid 36453178)
19. N.B. Matasova, S.V. Myltseva, M.A. Zenkova, D.M. Graifer, S.N. Vladimirov, and G.G. Karpova Isolation of ribosomal subunits containing intact rRNA from human placenta: estimation of functional activity of 80S ribosomes Anal. Biochem. 198 1991 219 223
20. T. Powers, and H.F. Noller Hydroxyl radical footprinting of ribosomal proteins on 16S rRNA RNA 1 1995 194 209
21. D.E. Brodersen, W.M. Clemons Jr., A.P. Carter, B.T. Wimberly, and V. Ramakrishnan Crystal structure of the 30S ribosomal subunit from Thermus thermophilus: structure of the proteins and their interactions with 16S RNA J. Mol. Biol. 316 2002 725 768 (Pubitemid 34729252)
22. K.V. Jamieson, J. Wu, S.R. Hubbard, and D. Meruelo Crystal structure of the human laminin receptor precursor J. Biol. Chem. 283 2008 3002 3005
23. B. Siridechadilok, C.S. Fraser, R.J. Hall, J.A. Doudna, and E. Nogales Structural roles for human translation factor eIF3 in initiation of protein synthesis Science 310 2005 1513 1515 (Pubitemid 41746350)
24. R.C. Edgar MUSCLE: multiple sequence alignment with high accuracy and high throughput Nucleic. Acids. Res. 32 2004 1792 1797 (Pubitemid 38832724)
25. M. Selmer, C.M. Dunham, F.V. Murphy, A. Weixlbaumer, S. Petry, A.C. Kelley, J.R. Weir, and V. Ramakrishnan Structure of the 70S ribosome complexed with mRNA and tRNA Science 313 2006 1935 1942 (Pubitemid 44497996)
26. B.T. Wimberly, D.E. Brodersen, W.M. Clemons Jr., R.J. Morgan-Warren, A.P. Carter, C. Vonrhein, T. Hartsch, and V. Ramakrishnan Structure of the 30S ribosomal subunit Nature 407 2000 327 339
27. J.J. Cannone, S. Subramanian, M.N. Schnare, J.R. Collett, L.M. D'Souza, Y. Du, B. Feng, N. Lin, L.V. Madabusi, K.M. Muller, N. Pande, Z. Shang, N. Yu, and R.R. Gutell The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs, BMC Bioinformatics 3 2002 2
28. R. Brimacombe RNA-protein interactions in the Escherichia coli ribosome Biochimie 73 1991 927 936
29. W.L. DeLano The PyMOL Molecular Graphics System 2002 DeLano Scientific San Carlos CA USA