Complete genome analysis of a novel intertypic recombinant human adenovirus causing epidemic keratoconjunctivitis in Japan

Journal of Clinical Microbiology

Volumn 49, Issue 2, 2011, Pages 484-490

  Kaneko, Hisatoshi ^a   Aoki, Koki ^b   Ohno, Shigeaki ^b   Ishiko, Hiroaki ^c   Fujimoto, Tsuguto ^d   Kikuchi, Masayuki ^e   Harada, Seiya ^f   Gonzalez, Gabriel ^g   Koyanagi, Kanako O ^g   Watanabe, Hidemi ^g   Suzutani, Tatsuo ^a  

^a FUKUSHIMA MEDICAL UNIVERSITY   (Japan)

^b HOKKAIDO UNIVERSITY GRADUATE SCHOOL OF MEDICINE   (Japan)

^c LSI MEDIENCE CORPORATION   (Japan)

^d NATIONAL INSTITUTE OF INFECTIOUS DISEASES   (Japan)

^e Sapporo City Institute of Public Health   (Japan)

^f Kumamoto Prefectural Institute of Public Health and Environmental Science   (Japan)

^g HOKKAIDO UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOVIRUS; ADENOVIRUS 15; ADENOVIRUS 26; ADENOVIRUS 29; ADENOVIRUS 9; ARTICLE; EPIDEMIC; GENE SEQUENCE; GENOME ANALYSIS; HUMAN; JAPAN; KERATOCONJUNCTIVITIS; MAJOR CLINICAL STUDY; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; PROMOTER REGION; SERODIAGNOSIS; VIRAL GENETICS; VIRUS GENOME; VIRUS ISOLATION; VIRUS STRAIN;

ADENOVIRIDAE INFECTIONS; ADENOVIRUSES, HUMAN; CLUSTER ANALYSIS; DNA, VIRAL; GENOME, VIRAL; HUMANS; JAPAN; KERATOCONJUNCTIVITIS; MOLECULAR EPIDEMIOLOGY; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY; VIRAL PROTEINS;

HUMAN ADENOVIRUS;

EID: 79951476166     PISSN: 00951137     EISSN: 1098660X     Source Type: Journal    
DOI: 10.1128/JCM.01044-10     Document Type: Article

References (38)

1. Adrian, T., B. Bastian, W. Benoist, J. C. Hierholzer, and R. Wigand. 1985. Characterization of adenovirus 15/H9 intermediate strains. Intervirology 23:15-22. (Pubitemid 15189594)
2. Adrian, T., B. Bastian, and V. Wagner. 1989. Restriction site mapping of adenovirus types 9 and 15 and genome types of intermediate adenovirus 15/H9. Intervirology 30:169-176. (Pubitemid 19169434)
3. Aoki, K., and Y. Tagawa. 2002. A twenty-one year surveillance of adenoviral conjunctivitis in Sapporo, Japan. Int. Ophthalmol. Clin. 42:49-54.
4. Aoki, K., et al. 2008. Epidemic keratoconjunctivitis due to the novel hexonchimeric- intermediate 22,37/H8 human adenovirus. J. Clin. Microbiol. 46: 3259-3269.
5. Ariga, T., et al. 2005. Five new genome types of adenovirus type 37 caused epidemic keratoconjunctivitis in Sapporo, Japan, for more than 10 years. J. Clin. Microbiol. 43:726-732.
6. Benko, M., B. Harrach, G. W. Bothe, and W. C. Russel. 2005. Family Adenoviridae, p. 213-228. In C. M. Fauquet, M. A. Mayo, J. Maniloff, U. Desselberger, and L. A. Ball (ed.), Virus taxonomy. Eighth report of the International Committee on Taxonomy of Viruses. Elsevier Academic Press, San Diego, CA.
7. Brudno, M., et al. 2003. LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA. Genome Res. 13:721-731. (Pubitemid 36511930)
8. Eiz, B., T. Adrian, and P. Pring-Akerblom. 1995. Immunological adenovirus variant strains of subgenus D: comparison of the hexon and fiber sequences. Virology 213:313-320.
9. Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
10. Ishiko, H., et al. 2008. Novel human adenovirus causing nosocomial epidemic keratoconjunctivitis. J. Clin. Microbiol. 46:2002-2008.
11. Ishiko, H., and K. Aoki. 2009. Spread of epidemic keratoconjunctivitis due to a novel serotype of human adenovirus in Japan. J. Clin. Microbiol. 47:2678-2679.
12. Jones, M. S., II, et al. 2007. New adenovirus species found in a patient presenting with gastroenteritis. J. Virol. 81:5978-5984.
13. Kaneko, H., T. Iida, K. Aoki, S. Ohno, and T. Suzutani. 2005. Sensitive and rapid detection of herpes simplex virus and varicella-zoster virus DNA by loop-mediated isothermal amplification. J. Clin. Microbiol. 43:3290-3296.
14. Kaneko, H., et al. 2009. Analysis of the complete genome sequence of epidemic keratoconjunctivitis-related human adenovirus type 8, 19, 37 and a novel serotype. J. Gen. Virol. 90:1471-1476.
15. Kaneko, H., et al. 2009. Nucleotide sequence variation in the hexon gene of human adenovirus type 8 and 37 strains from epidemic keratoconjunctivitis patients in Japan. J. Gen. Virol. 90:2260-2265.
16. Kaneko, H., et al. 2010. Epidemiological and virological features of epidemic keratoconjunctivitis due to new human adenovirus type 54 in Japan. Br. J. Ophthalmol. 95:32-36.
17. Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequence. J. Mol. Evol. 16:111-120.
18. Lole, K. S., et al. 1999. Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J. Virol. 73:152-160. (Pubitemid 28565356)
19. Lukashev, A. N., O. E. Ivanova, T. P. Eremeeva, and R. D. Iggo. 2008. Evidence of frequent recombination among human adenoviruses. J. Gen. Virol. 89:380-388.
20. Madisch, I., G. Harste, H. Pommer, and A. Heim. 2005. Phylogenetic analysis of the main neutralization and hemagglutination determinants of all human adenovirus prototypes as a basis for molecular classification and taxonomy. J. Virol. 79:15265-15276. (Pubitemid 43032309)
21. Miura-Ochiai, R., et al. 2007. Quantitative detection and rapid identification of human adenoviruses. J. Clin. Microbiol. 45:958-967.
22. Noda, M., Y. Miyamoto, Y. Ikeda, T. Matsuishi, and T. Ogino. 1991. Intermediate human adenovirus type 22/H10,19,37 as a new etiological agent of conjunctivitis. J. Clin. Microbiol. 29:1286-1289.
23. Norby, E. 1968. Comparative studies on the soluble components of adenovirus types 9 and 15 and the intermediate strain 9-15. J. Virol. 2:1200-1210.
24. Pring-Akerblom, P., and T. Adrian. 1995. Characterization of adenovirus subgenus D fiber genes. Virology 206:564-571.
25. Robinson, C. M., F. Shariati, A. F. Gillaspy, D. W. Dyer, and J. Chodosh. 2008. Genomic and bioinformatics analysis of human adenovirus type 37: new insights into corneal tropism. BMC Genomics 9:213.
26. Saitou, N., and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
27. Schrader, E., and R. Wigand. 1981. Neutralization of adenovirus infectivity and cytotoxin in various cell cultures. J. Virol. Methods 2:321-330. (Pubitemid 11125750)
28. Shimada, Y., et al. 2004. Molecular diagnosis of human adenoviruses d and e by a phylogeny-based classification method using a partial hexon sequence. J. Clin. Microbiol. 42:1577-1584.
29. Shinagawa, M., A. Matsuda, T. Ishiyama, H. Goto, and G. Sato. 1983. A rapid and simple method for preparation of adenovirus DNA from infected cells. Microbiol. Immunol. 27:817-822.
30. Swenson, P. D., G. Wadell, A. Allard, and J. C. Hierholzer. 2003. Adenoviruses, p. 1404-1417. In E. Murray, J. Baron, M. A. Pfaller, J. H. Jorgensen, and R. H. Yolken (ed.), Manual of clinical microbiology, vol. 2, 8th ed. ASM Press, Washington, DC.
31. Tamura, K., J. Dudley, M. Nei, and S. Kumar. 2007. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24:1596-1599.
32. Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
33. Walsh, M. P., et al. 2009. Evidence of molecular evolution driven by recombination events influencing tropism in a novel human adenovirus that causes epidemic keratoconjunctivitis. PLoS One 4:e5635.
34. Walsh, M. P., et al. 2010. Computational analysis identifies human adenovirus type 55 as a re-emergent acute respiratory disease pathogen. J. Clin. Microbiol. 48:991-993.
35. Wigand, R., et al. 1982. Adenoviridae: second report. Intervirology 18:169-176. (Pubitemid 12037466)
36. Wigand, R., D. Keller, and I. Werling. 1982. Immunological relationship among human adenoviruses of subgenus D. Arch. Virol. 72:199-209.
37. Wold, W. S. M., and M. S. Horowitz. 2007. Adenoviridae, p. 2395-2436. In D. M. Knipe et al. (ed.), Fields virology, vol. II, 5th ed. Lippincott Williams & Wilkins, Philadelphia, PA.
38. Yang, Z., et al. 2009. Genomic analyses of recombinant adenovirus type 11a in China. J. Clin. Microbiol. 47:3082-3090.