Anatomically anchored template-based level set segmentation: Application to quadriceps muscles in MR images from the osteoarthritis initiative

Journal of Digital Imaging

Volumn 24, Issue 1, 2011, Pages 28-43

  Prescott, Jeffrey W ^a   Best, Thomas M ^a   Swanson, Mark S ^a   Haq, Furqan ^a   Jackson, Rebecca D ^b   Gurcan, Metin N ^a  

^a OHIO STATE UNIVERSITY   (United States)

^b THE OHIO STATE UNIVERSITY WEXNER MEDICAL CENTER   (United States)

Author keywords

level sets; MRI; muscle segmentation; Osteoarthritis; templates

Indexed keywords

LEVEL SET; MRI; MUSCLE SEGMENTATION; OSTEOARTHRITIS; TEMPLATES;

ALGORITHMS; MAGNETIC RESONANCE; MAGNETIC RESONANCE IMAGING; MUSCLE; NUMERICAL METHODS;

IMAGE SEGMENTATION;

AGED; ALGORITHM; ARTICLE; AUTOMATED PATTERN RECOGNITION; COMPUTER ASSISTED DIAGNOSIS; FEMALE; HUMAN; MALE; METHODOLOGY; MIDDLE AGED; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; OSTEOARTHRITIS; QUADRICEPS FEMORIS MUSCLE; RADIOGRAPHY;

AGED; ALGORITHMS; FEMALE; HUMANS; IMAGE INTERPRETATION, COMPUTER-ASSISTED; MAGNETIC RESONANCE SPECTROSCOPY; MALE; MIDDLE AGED; OSTEOARTHRITIS; PATTERN RECOGNITION, AUTOMATED; QUADRICEPS MUSCLE;

EID: 79751534616     PISSN: 08971889     EISSN: 1618727X     Source Type: Journal    
DOI: 10.1007/s10278-009-9260-2     Document Type: Article

References (35)

1. DT Felson RC Lawrence PA Dieppe, et al. 2000 Osteoarthritis: new insights. Part 1: the disease and its risk factors Ann Intern Med 133 635 646 1:STN:280:DC%2BD3M%2Fht1SitA%3D%3D 11033593
2. Buckwalter JA, Einhorn TA, Simon SR, American Academy of Orthopaedic Surgeons: Orthopaedic Basic Science Biology and Biomechanics of the Musculoskeletal System, Rosemont: American Academy of Orthopaedic Surgeons, 2000
3. Kalunian K: (2007) Diagnosis and classification of osteoarthritis. UpToDate, http://www.uptodate.com/patients/content/topic.do?topicKey=~l4eaQOHX. LOG.a
4. KR Baker L Xu Y Zhang M Nevitt J Niu P Aliabadi W Yu D Felson 2004 Quadriceps weakness and its relationship to tibiofemoral and patellafemoral knee osteoarthritis in Chinese Arthritis Rheum 50 1815 1821 10.1002/art.20261 15188358 (Pubitemid 38725094)
5. CW Slemenda DK Heilman KD Brandt BP Katz SA Mazzuca EM Braunstein D Byrd 1998 Reduced quadriceps strength relative to body weight: a risk factor for knee osteoarthritis in women? Arthritis Rheum 41 1951 1959 1:STN:280: DyaK1M%2FislWktg%3D%3D 10.1002/1529-0131(199811)41:11<1951::AID-ART9>3.0. CO;2-9 9811049 (Pubitemid 28506684)
6. KD Brandt DK Heilman CW Slemenda BP Katz SA Mazzuca EM Braunstein D Byrd 1999 Quadriceps strength in women with radiographically progressive osteoarthritis of the knee and those with stable radiographic changes J Rheumatol 26 2431 2437 1:STN:280:DC%2BD3c%2Fit1ygsA%3D%3D 10555906 (Pubitemid 29528987)
7. C Cooper S Snow TE McAlindon S Kellingray B Stuart D Coggon PA Dieppe 2000 Risk factors for the incidence and progression of radiographic knee osteoarthritis Arthritis Rheum 43 995 1:STN:280:DC%2BD3c3nsFamsA%3D%3D 10.1002/1529-0131(200005)43:5<995::AID-ANR6>3.0.CO;2-1 10817551 (Pubitemid 30368175)
8. CS Klein CL Rice GD Marsh 2001 Normalized force, activation, and coactivation in the arm muscles of young and old men J Appl Physiol 91 3 1341 1349 1:STN:280:DC%2BD3MvmsVKqsA%3D%3D 11509534 (Pubitemid 32803931)
9. CI Morse JM Thom ND Reeves KM Birch MV Narici 2005 In vivo physiological cross-sectional area and specific force are reduced in the gastrocnemius of elderly men J Appl Physiol 99 3 1050 1055 10.1152/japplphysiol.01186.2004 15905324 (Pubitemid 41214522)
10. CI Morse H Degens DA Jones 2007 The validity of estimating quadriceps volume from single MRI cross-sections of young men Eur J Appl Physiol 100 267 274 10.1007/s00421-007-0429-4 17342544 (Pubitemid 46711600)
11. T Stammberger F Eckstein M Michaelis KH Englmeier M Reiser 1999 Interobserver reproducibility of quantitative cartilage measurements: comparison of B-spline snakes and manual segmentation Magn Reson Imaging 17 1033 1042 1:STN:280:DyaK1MzptFaqtw%3D%3D 10.1016/S0730-725X(99)00040-5 10463654 (Pubitemid 29420717)
12. J Duryea G Neumann MH Brem W Koh F Noorbakhsh RD Jackson J Yu CB Eaton P Lang 2007 Novel fast semi-automated software to segment cartilage for knee MR acquisitions Osteoarthr Cartil 15 5 487 492 1:STN:280:DC%2BD2s3ntVKruw%3D%3D 10.1016/j.joca.2006.11.002 17188525 (Pubitemid 46667719)
13. S Solloway CE Hutchinson JC Waterton CJ Taylor 1997 The use of active shape models for making thickness measurements of articular cartilage from MR images Magn Reson Med 37 943 952 1:STN:280:DyaK2szitFGgtQ%3D%3D 10.1002/mrm.1910370620 9178247 (Pubitemid 27270773)
14. JA Lynch S Zaim J Zhao A Stork C Peterfy HK Genant 2000 Cartilage segmentation of 3D MRO scans of the osteoarthritic knee combining user knowledge and active contours Proc SPIE 3979 925 35 10.1117/12.387758
15. AJ Gougoutas AJ Wheaton A Borthakur EM Shapiro BJ Kneeland JK Udupa R Reddy 2004 Cartilage volume quantification via Live Wire segmentation Acad Rad 11 12 1389 1395 10.1016/j.acra.2004.09.003 (Pubitemid 39642826)
16. D Steines C Cheng J Wong S Tsai P Napel P Lang 2000 Segmentation of osteoarthritic femoral cartilage using live wire Proc Int Soc Magn Reson Med 8 220
17. Kuk J, Ross R: Measurement of body composition in obesity. In: Kushner R, Bessesen D Eds. Contemporary Endocrinology: Treatment of the Obese Patient. Totowa: Humana Press, 2007
18. N Mitsiopoulos RN Baumgartner SB Heymsfield W Lyons D Gallagher R Ross 1998 Cadaver validation of skeletal muscle measurement by magnetic resonance imaging and computerized tomography J Appl Physiol 85 115 122 1:STN:280:DyaK1czhvFyisA%3D%3D 9655763 (Pubitemid 28334913)
19. P Gargiulo B Vatnsdal P Ingvarsson S Knútsdóttir V Gudmundsdóttir S Yngvason T Helgason 2008 Restoration of muscle volume and shape induced by electrical stimulation of denervated degenerated muscles: qualitative and quantitative measurement of changes in rectus femoris using computer tomography and image segmentation Artif Organs 32 8 609 613 10.1111/j.1525-1594.2008.00610.x 18782130
20. Nevitt MC, Felson DT, Lester G: The Osteoarthritis Initiative: Protocol for the Cohort Study, v. 1.1. June 21, 2006
21. J Kellgren J Lawrence 1957 Radiological assessment of osteoarthritis Ann Rheum Dis 16 494 501 1:STN:280:DyaG1c%2FktFeltQ%3D%3D 10.1136/ard.16.4.494 13498604
22. Haacke EM: Magnetic resonance imaging: Physical principles and sequence design, New York: Wiley, 1999
23. JG Sled AP Zijdenbos AC Evans 1998 A nonparametric method for automatic correction of intensity nonuniformity in MRI data IEEE Trans Med Imag 17 1 87 97 1:STN:280:DyaK1c3nvVCksA%3D%3D 10.1109/42.668698 (Pubitemid 128742012)
24. A Madabhushi JK Udupa 2005 Interplay between intensity standardization and inhomogeneity correction in mr image processing IEEE Trans Med Img 24 5 561 576 10.1109/TMI.2004.843256 (Pubitemid 40680118)
25. Prescott JW, Priddy M, Swanson MS, Haq F, Best TM, Powell K, Jackson R, Gurcan MN: An Automated Method for Intramuscular Fat Detection in Quadriceps Muscles for Osteoarthritis Diagnosis. EMBC 2009, Minneapolis, MN, Sept. 2-6, 2009
26. E Parzen 1962 On estimation of a probability density function and mode Ann Math Stat 33 3 1065 1076 10.1214/aoms/1177704472
27. Duda RO, Hart PE: Pattern Classification, New York: Wiley, 2001
28. Cover TM, Thomas JA: Elements of Information Theory, New York: Wiley, 1991
29. Gonzalez RC, Woods RE: Digital Image Processing, Upper Saddle River: Prentice Hall, 2002
30. Prescott JW, Swanson MS, Haq F, Best TM, Powell K, Jackson R, Gurcan MN: An Automated Method for Femur Segmentation for Osteoarthritis Research," EMBC 2009, Minneapolis, MN, Sept. 2-6, 2009
31. N Mitsiopoulos RN Baumgartner SB Hemsfield W Lyons D Gallagher R Ross 1998 Cadaver validation of skeletal muscle measurement by magnetic resonance imaging and computerized tomography J Appl Physiol 85 115 122 1:STN:280:DyaK1czhvFyisA%3D%3D 9655763 (Pubitemid 28334913)
32. P Perona J Malik 1990 Scale-space and edge detection using anisotropic diffusion IEEE Trans Patt Anal Mach Intell 12 7 629 639 10.1109/34.56205 (Pubitemid 20726016)
33. Li C, Xu C, Gui C, Fox MD: Level set evolution without re-initialization: a new variational formulation. IEEE Conf Comp Vis Patt Recog 1:430-436, 2005
34. AP Zijdenbos BM Dawant RA Margolin AC Palmer 1994 Morphometric analysis of white matter lesions in MR images: Method and validation IEEE Trans Med Imag 13 716 724 1:STN:280:DC%2BD1c%2FmsFCqsw%3D%3D 10.1109/42.363096
35. JR Landis GG Koch 1977 The measurement of observer agreement for categorical data Biometrics 33 1 159 174 1:STN:280:DyaE2s7jsFWqtA%3D%3D 10.2307/2529310 843571 (Pubitemid 8054849)