Effect of inter-subject variation on the accuracy of atlas-based segmentation applied to human brain structures

Progress in Biomedical Optics and Imaging - Proceedings of SPIE

Volumn 7623, Issue PART 1, 2010, Pages

  Doan, Nhat Trung ^a,b   Orban De Xivry, Jonathan ^a   MacQ, Benoît ^a  

^a UNIVERSITÉ CATHOLIQUE DE LOUVAIN   (Belgium)

^b LEIDEN UNIVERSITY MEDICAL CENTER   (Netherlands)

Author keywords

atlas based segmentation; human brain structures; inter subject variation; segmentation accuracy

Indexed keywords

ANATOMICAL STRUCTURES; ATLAS-BASED SEGMENTATION; AUTOMATIC SEGMENTATIONS; BRAIN ATLAS; BRAIN MAPPING; BRAIN SEGMENTATION; CRITICAL CHALLENGES; DATA SETS; HUMAN BRAIN; HUMAN POPULATION; INTER-SUBJECT VARIATION; MORPHONS; MULTIPLE COMPARISON; NON-RIGID REGISTRATION ALGORITHMS; SEGMENTATION ACCURACY;

ALGORITHMS; BRAIN; IMAGE PROCESSING; IMAGING SYSTEMS;

MEDICAL IMAGING;

EID: 79751516434     PISSN: 16057422     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1117/12.845586     Document Type: Conference Paper

References (18)

1. Baillard, C., Hellier, P., Barillot, C., "Segmentation of brain 3D MR images using level sets and dense registration", Med. Image Anal. 5 (3), 185-194 (2001).
2. Dawant, B.M., Hartmann, S.L., Thirion, J.P., Maes, F., Vandermeulen, D., Demaerel, P., "Automatic 3-D segmentation of internal structures of the head in MR images using a combination of similarity and freeform transformations: Part I, methodology and validation on normal subjects", IEEE Trans. Med. Imag. 18 (10), 909-916 (1999).
3. Paul M. Thompson, Roger P. Woods, Michael S. Mega, Authur W. Toga, "Mathematical/Computational Challenges in Creating Deformable and Probabilistic Atlases of the Human Brain", Human Brain Mapping 9 (2), 81-92 (2000).
4. Thirion, J.-P, "Non-Rigid Matching Using Demons", Proc. CVPR 96, (1996).
5. Xavier Pennec, Jind Rich Zapletal, Cristina G. Fernandes, "Understanding the "Demon's Algorithm": 3D Non-Rigid registration by Gradient Descent", Proc. MICCAI 99, LNCS 1679, 597-605 (1999).
6. Hans Knutsson, Mats Andersson, "Morphons: Segmentation Using Elastic Canvas and Paint on Priors", Proc. IEEE ICIP 05, 1226-1229 (2005)
7. Andreas Wrangsjö, Johanna Pettersson, Hans Knutsson, "Non-Rigid Registration Using Morphons", SCIA 2005, LNCS 3540, 501-510 (2005).
8. Torsten Rohlfing, Robert Brandt, Randolf Menzel, Calvin R. Maurer Jr, "Evaluation of Atlas Selection Strategies for Atlas-based Image Segmentation with Application to Confocal Microscopy Images of Bee Brains", NeuroImage 21, 1428-1442 (2004).
9. Minjie Wu, Caterina Rosano, Pilar Lopez-Garcia, Cameron S. Carter, Howard J. Aizenstein, "Optimum Template Selection for Atlas-based Segmentation", NeuroImage 34, 1612-1618 (2007).
10. Adriane Parraga, Benoit Macq, Johanna Pettersson, Mathieu De Craene, "3D Atlas Building in the Context of Head and Neck Radiotherapy Based on Dense Deformation Fields", Proc. the XX Brazilian Symposium on Computer Graphics and Image Processing, 321-328 (2007).
11. William F.C. Baaré, Hilleke E. Hulshoff Pol, Dorret I. Boomsma, Daniëlle Posthuma, Eco J.C. de Geus, Hugo G. Schnack, Neeltje E.M. van Haren, Clarine J. van Oel and René S. Kahn, "Quantitative Genetic Modeling of Variation in Human Brain Morphology", Cerebral Cortex 11, No. 9, 816-824 (2001).
12. Ivana Isgum, Marius Staring, Annemarieke Rutten, Mathias Prokop, Max A. Viergever, Bram van Ginneken, "Multi-Atlas-Based Segmentation With Local Decision Fusion - Application to Cardiac and Aortic Segmentation in CT Scans", IEEE Trans Med Imaging 28 (7), 1000-1010 (2009).
13. Artaechevarria X, Munoz-Barrutia A, Ortiz-de-Solorzano C, "Combination Strategies in Multi-Atlas Image Segmentation: Application to Brain MR Data", IEEE TransMed Imaging 28 (8), 1266-77 (2009).
14. Internet Brain Segmentation Repository (IBSR) [Online]. Available at: http://www.cma.mgh.harvard.edu/ibsr
15. Shattuck DW, Mirza M, Adisetiyo V, Hojatkashani C, Salamon G, Narr KL, Poldrack RA, Bilder RM, Toga AW, "Construction of a 3D Probabilistic Atlas of Human Cortical Structures", NeuroImage 39, 1064-80, (2008).
16. Pettersson J, Knutsson H, Borga M, "Normalised Convolution and Morphons for Non-Rigid Registration", Proc. the SSBA Symposium on Image Analysis, Umeå, Sweden: SSBA, (2006).
17. Klein, A., et al, "Evaluation of 14 Nonlinear Deformation Algorithms Applied to Human Brain MRI Registration", NeuroImage 46(3), 786-802 (2009).
18. http://www.mindboggle.info/papers/evaluation-NeuroImage2009.php