Optimum template selection for atlas-based segmentation

NeuroImage

Volumn 34, Issue 4, 2007, Pages 1612-1618

  Wu, Minjie ^a   Rosano, Caterina ^b   Lopez Garcia, Pilar ^c   Carter, Cameron S ^c   Aizenstein, Howard J ^d  

^a University of Pittsburgh   (United States)

^b UNIVERSITY OF PITTSBURGH GRADUATE SCHOOL OF PUBLIC HEALTH   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

^d UNIVERSITY OF PITTSBURGH   (United States)

Author keywords

Atlas based segmentation; Template selection

Indexed keywords

ADULT; AMYGDALOID NUCLEUS; ARTICLE; ATLAS BASED SEGMENTATION; BRAIN REGION; CINGULATE GYRUS; CONTROLLED STUDY; CORRELATION COEFFICIENT; FEMALE; HUMAN; MALE; NORMAL HUMAN; NUCLEAR MAGNETIC RESONANCE IMAGING; PRIORITY JOURNAL; REGISTRATION; SEPARATION TECHNIQUE; STATISTICAL ANALYSIS; STATISTICAL SIGNIFICANCE; STUDENT T TEST; TWO TAILED TEST;

ADULT; AUTOMATION; BRAIN; BRAIN MAPPING; FEMALE; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; MAGNETIC RESONANCE IMAGING; MALE; MODELS, NEUROLOGICAL; REFERENCE VALUES; REPRODUCIBILITY OF RESULTS;

EID: 33846645990     PISSN: 10538119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.neuroimage.2006.07.050     Document Type: Article

References (28)

1. Ashburner J., and Friston K.J. Nonlinear spatial normalization using basis functions. Hum. Brain Mapp. 7 (1999) 254-266
2. Carmichael O.T., Aizenstein H.J., Davis S.W., Becker J.T., Thompson P.M., Meltzer C.C., and Liu Y. Atlas-based hippocampus segmentation in Alzheimer's disease and mild cognitive impairment. NeuroImage 27 4 (2005) 979-990
3. Chen M. 3-D Deformable Registration Using A Statistical Atlas with Applications in Medicine (1999), Carnegie Mellon University
4. Collins D.L. 3D Model-Based Segmentation of Individual Brain Structures from Magnetic Resonance Imaging Data (1994), McGill University, Montreal
5. Collins D.L., Holmes C.J., Peters T.M., and Evans A.C. Automatic 3-D model-based neuroanatomical segmentation. Hum. Brain Mapp. 3 (1995) 190-208
6. Dawant B.M., Hartmann S.L., Thirion J.-P., Maes F., Vandermeulen D., and Demaerel P. Automatic 3-D segmentation of internal structures of the head in MR Images using a combination of similarity and free-form transformations: Part I, methodology and validation on normal subjects. IEEE Trans. Med. Imag. 18 10 (1999) 909-916
7. Filipek P.A., Richelme C., Kennedy D.N., and Caviness Jr. V.S. The young adult human brain: an MRI-based morphometric analysis. Cereb. Cortex 4 4 (1994) 344-360
8. Holmes C.J., Hoge R., Collins L., Woods R., Toga A.W., and Evans A.C. Enhancement of MR images using registration for signal averaging. J. Comput. Assist. Tomogr. 22 2 (1998) 324-333
9. Mazziotta J.C., Toga A.W., Evans A., Fox P., and Lancaster J. A probabilistic atlas of the human brain: theory and rationale for its development. The International Consortium for Brain Mapping (ICBM). NeuroImage 2 2 (1995) 89-101
10. Mazziotta J., Toga A., Evans A., Fox P., Lancaster J., Zilles K., Woods R., Paus T., Simpson G., Pike B., et al. A probabilistic atlas and reference system for the human brain: International Consortium for Brain Mapping (ICBM). Philos. Trans. R. Soc. Lond., B Biol. Sci. 356 1412 (2001) 1293-1322
11. Nie N.H., Bent D.H., and Hull C.H. SPSS: Statistical Package for the Social Sciences (1970), McGraw-Hill, New York xx, 343 pp.
12. Ono, M., Kubik, S., Abernathey, C.D., 1990. Atlas of the Cerebral Sulci. Stuttgart, New York: G. Thieme Verlag; Thieme Medical Publishers. xiv, 218 pp.
13. Paus T., Tomaiuolo F., Otkay N., MacDonald D., Petrides M., Atlas J., Morris R., and Evans A.C. Human cingulate and paracingulate sulci: pattern, variability, asymmetry, and probabilistic map. Cereb. Cortex 6 (1996) 207-214
14. Prastawa M., Gilmore J.H., Lin W., and Gerig G. Automatic segmentation of MR images of the developing newborn brain. Med. Image Anal. 9 5 (2005) 457-466
15. Rademacher J., Morosan P., Schormann T., Schleicher A., Werner C., Freund H.-J., and Zilles K. Probabilistic mapping and volume measurement of human primary auditory cortex. NeuroImage 13 4 (2001) 669-683
16. Rohlfing T., Brandt R., Menzel R., and Maurer C.R.J. Evaluation of atlas selection strategies for atlas-based image segmentation with application to confocal microscopy images of bee brains. NeuroImage 21 4 (2004) 1428-1442
17. Talairach J., and Tournoux P. Co-planar Stereotaxic Atlas of the Human Brain: 3-Dimensional Proportional System: An Approach to Medical Cerebral Imaging (1988), Thieme Medical Publishers, Stuttgart 122 pp.
18. Thirion J.P. Image matching as a diffusion process: an analogy with Maxwell's demons. Med. Image Anal. 2 (1998) 243-260
19. Thompson P.M., Woods R.P., Mega M.S., and Toga A.W. Mathematical/computational challenges in creating deformable and probabilistic atlases of the human brain. Hum. Brain Mapp. 9 2 (2000) 81-92
20. Thompson P.M., Mega M.S., Woods R.P., Zoumalan C.I., Lindshield C.J., Blanton R.E., Moussai J., Holmes C.J., Cummings J.L., and Toga A.W. Cortical change in Alzheimer's disease detected with a disease-specific population-based brain atlas. Cereb. Cortex 11 1 (2001) 1-16
21. Toga A.W. Brain Warping (1999), Academic Press, San Diego
22. Tzourio-Mazoyer N., Landeau B., Papathanassiou D., Crivello F., Etard O., Delcroix N., Mazoyer B., and Joliot M. Automated anatomical labeling of activations in SPM using a macroscopic anatomical parcellation of the MNI MRI single-subject brain. NeuroImage 15 (2002) 273-289
23. Unser M., Aldroubi A., and Gerfen C.R. A Multiresolution image registration procedure using spline pyramids. Proceedings of the SPIE Conference on Mathematical Imaging: Wavelet Applications in Signal and Image Processing; 1993 July 15-16; San Diego CA, USA (1993) 160-170
24. Vemuri B.C., Ye J., Chen Y., and Leonard C.M. Image registration via level-set motion: applications to atlas-based segmentation. Med. Image Anal. 7 1 (2003) 1-20
25. Venkatasubramanian G., Gangadhar B.N., Jayakumar P.N., Janakiramaiah N., and Keshavan M.S. Striato-cerebellar abnormalities in never-treated schizophrenia: evidence for neurodevelopmental etiopathogenesis. Ger. J. Psychiatry 6 1 (2003) 1-7
26. Woods R.P., Grafton S.T., Watson J.D., Sicotte N.L., and Mazziotta J.C. Automated image registration: II. Intersubject validation of linear and nonlinear models. J. Comput. Assist. Tomogr. 22 1 (1998) 153-165
27. Wu M., Carmichael O., Lopez-Garcia P., Carter C.S., and Aizenstein H.J. Quantitative comparison of the AIR, SPM, and a fully deformable model for atlas-based segmentation of functional and structural MR images. Hum. Brain Mapp. 27 9 (2006) 747-754
28. Yoo T. Insight into Images: Principles and Practice for Segmentation, Registration, and Image Analysis (2004), AK Peters Ltd, Wellesey, MA