Molecular analysis of the genetic diversity of Chinese Hami melon and Its Relationship to the melon germplasm from Central and South Asia

Journal of the Japanese Society for Horticultural Science

Volumn 80, Issue 1, 2011, Pages 52-65

  Aierken, Yasheng ^a,b   Akashi, Yukari ^a   Nhi, Phan Thi Phuong ^a   Halidan, Yikeremu ^a   Tanaka, Katsunori ^a   Long, Bo ^c   Nishida, Hidetaka ^a   Long, Chunlin ^d   Wu, Min Zhu ^b   Kato, Kenji ^a  

^a OKAYAMA UNIVERSITY   (Japan)

^b INSTITUTE OF MICROBIOLOGY   (China)

^c RESEARCH INSTITUTE FOR HUMANITY AND NATURE   (Japan)

^d KUNMING INSTITUTE OF BOTANY   (China)

Author keywords

Chloroplast genome; Cucumis melo; Genetic diversity; Hami melon; SSR

Indexed keywords

CUCUMIS; CUCUMIS MELO;

EID: 79551692784     PISSN: 18823351     EISSN: 1882336X     Source Type: Journal    
DOI: 10.2503/jjshs1.80.52     Document Type: Article

References (38)

1. Akashi, Y., N. Fukuda, T. Wako, M. Masuda and K. Kato. 2002. Genetic variation and phylogenetic relationships in East and South Asian melon, Cucumis melo L., based on the analysis of five isozymes. Euphytica 125: 385-396. (Pubitemid 34829453)
2. Akashi, Y., S. Shiomi, Y. Kubo, M. Masuda and K. Kato. 2001. Microsatellite and CAPS markers for ethylene-related genes, 1-Aminocyclopropane- 1-Carboxylic Acid (ACC) synthase and ACC Oxidase genes, and their variation in melon (Cucumis melo L.). Breed. Sci. 51: 107-112. (Pubitemid 32589107)
3. Anderson, J. A., G. A. Churchill, J. E. Autrique, S. D. Tanksley and M. E. Sorrells. 1993. Optimizing parental selection for genetic-linkage maps. Genome 36: 181-186. (Pubitemid 23142724)
4. Apostol, B. L., W. C. I. V. Black, B. R. Miller, P. Reiter and B. J. Beaty. 1993. Estimation of the number of full sibling families at an oviposition site using RAPD-PCR markers: applications to the mosquito Aedes aegypti. Theor. Appl. Genet. 86: 991-1000.
5. Chiba, N., K. Suwabe, T. Nunome and M. Hirai. 2003. Development of microsatellite markers in melon (Cucumis melo L.) and their application to major Cucurbit crops. Breed. Sci. 53: 21-27. (Pubitemid 36352410)
6. Chung, S. M. and J. E. Staub. 2003. The development and evaluation of consensus chloroplast primer pairs that possess highly variable sequence regions in a diverse array of plant taxa. Theor. Appl. Genet. 107: 757-767. (Pubitemid 37078177)
7. Danin-Poleg, Y., N. Reis, S. Baudracco-Arnas, M. Pitrat, J. E. Staub, M. Oliver, P. Arus, C. M. deVicente and N. Katzir. 2000. Simple sequence repeats in Cucumis mapping and map merging. Genome 43: 963-974. (Pubitemid 32119808)
8. Dhillon, N. P. S., R. Ranjana, K. Singh, I. Eduardo, A. J. Monforte, M. Pitrat, N. K. Dhillon and P. P. Singh. 2007. Diversity among landraces of Indian snapmelon (Cucumis melo var. momordica). Genet. Resour. Crop. Evol. 54: 1267-1283. (Pubitemid 47084282)
9. Fukino, N., Y. Sakata, M. Kunihisa and S. Matsumoto. 2007. Characterisation of novel simple sequence repeat (SSR) markers for melon (Cucumis melo L.) and their use for genotype identification. J. Hort. Sci. Biotech. 82: 330-334.
10. Garcia-Mas, J., A. J. Monforte and P. Arus. 2004. Phylogenetic relationships among Cucumis species based on ribosomal internal transcribed spacer region. Plant Sys. Evol. 248: 191-203. (Pubitemid 39384667)
11. Garcia-Mas, J., M. Oliver, H. Gomez-Paniagua and M. C. de Vicente. 2000. Comparing AFLP, RAPD and RFLP markers for measuring genetic diversity in melon. Theor. Appl. Genet. 101: 860-864.
12. Gower, J. C. 1966. Some distance properties of latent root and vector methods used in multivariate analysis. Biometrika 53: 325-338.
13. Jeffrey, C. 2001. Cucurbitaceae. p. 1510-1557. In: P. Hanelt and Institute of Plant Genetics and Crop Plant Research (eds.). Mansfeld's Encyclopedia on Agricultural and Horticultural Crops. Springer, Berlin-Heidelberg-New York.
14. Lin, D. P. 1991. Classification of melon, p. 9-21. In: S. K. Qi, D. K. Wu and D. P. Lin (eds.). Chinese Melon. Popular Science Press, Beijing (In Chinese).
15. Liu, L., F. Kakihara and M. Kato. 2004. Characterization of six varieties of Cucumis melo L. based on morphological and physiological characters, including shelf-life of fruit. Euphytica 135: 305-313. (Pubitemid 38260899)
16. López-Sesé, A. I., J. E. Staub and M. L. Gómez-Guillamón. 2003. Genetic analysis of Spanish melon (Cucumis melo L.) germplasm using a standardized molecular-marker array and geographically diverse reference accessions. Theor. Appl. Genet. 108: 41-52. (Pubitemid 38097980)
17. López-Sesé, A. I., J. E. Staub, N. Katzir and M. L. Gómez-Guillamón. 2002. Estimation of between and within accession variation in selected Spanish melon germplasm using RAPD and SSR markers to assess strategies for large collection evaluation. Euphytica 127: 41-51.
18. Luan, F., I. Delannay and J. E. Staub. 2008. Chinese melon (Cucumis melo L.) diversity analyses provide strategies for germplasm curation, genetic improvement, and evidentiary support of domestication patterns. Euphytica 164: 445-461.
19. Mavlyanova, R., A. Rustamov, R. Khakimov, A. Khakimov, M. Turdieva and S. Padulosi. 2005. Melons of Uzbekistan. IPGRI's Sub-regional office for Central Asia, Tashkent.
20. Mliki, A., J. E. Staub, Z. Y. Sun and A. Ghorbel. 2001. Genetic diversity in melon (Cucumis melo L.): An evaluation of African germplasm. Genet. Resour. Crop Evol. 48: 587-597. (Pubitemid 34004096)
21. Monforte, A. J., J. Garcia-Mas and P. Arús. 2003. Genetic variability in melon based on microsatellite variation. Plant Breed. 122: 153-157. (Pubitemid 36557588)
22. Munger, H. M. and R. W. Robinson. 1991. Nomenclature of Cucumis melo L. Cucurbit Genet. Coop. Rep. 14: 43-44.
23. Murray, G. C. and W. F. Thompson. 1980. Rapid isolation of high molecular weight DNA. Nucl. Acids Res. 8: 4321-4325.
24. Nakamura, I., N. Kameya, Y. Kato, S. I. Yamanaka, H. Jomori and Y. Sato. 1997. A proposal for identifying the short ID sequence which addresses the plastid subtype of higher plants. Breed. Sci. 47: 385-388. (Pubitemid 28037911)
25. Nakata, E., J. E. Staub, A. I. López-Sesé and N. Katzir. 2005. Genetic diversity of Japanese melon cultivars as assessed by random amplified polymorphic DNA and simple sequence repeat markers. Genet. Resour. Crop Evol. 52: 405-419. (Pubitemid 41583782)
26. Nei, M. 1972. Genetic distance between populations. Am. Nat. 106: 283-292.
27. Pitrat, M., P. Hanelt and K. Hammer. 2000. Some comments on intraspecific classification of cultivars of melon. Proc. Cucurbitaceae: 29-36.
28. Ritschel, P. S., T. C. L. Lins, R. L. Tristan, G. S. C. Buso, J. A. Buso and M. E. Ferreira. 2004. Development of microsatellite markers from an enriched genomic library for genetic analysis of melon (Cucumis melo L.). BMC Plant Biol. 4: 9.
29. Soltani, F., Y. Akashi, A. Kashi, Z. Zamani, Y. Mostofi and K. Kato. 2010. Characterization of Iranian melon landraces of Cucumis melo L. Groups Flexuosus and Dudaim by analysis of morphological characters and random amplified polymorphic DNA. Breed. Sci. 60: 34-45.
30. Staub, J. E., Y. Danin-Poleg, G. Fazio, T. Horejsi, N. Reis and N. Katzir. 2000. Comparative analysis of cultivated melon groups (Cucumis melo L.) using random amplified polymorphic DNA and simple sequence repeat markers. Euphytica 115: 225-241.
31. Staub, J. E., A. I. López-Sesé and N. Fanourakis. 2004. Diversity among melon landraces (Cucumis melo L.) from Greece and their genetic relationship with other melon germplasm of diverse origins. Euphytica 136: 151-166. (Pubitemid 38995194)
32. Stepansky, A., I. Kovalski and R. Perl-Treves. 1999. Intraspecific classification of melons (Cucumis melo L.) in view of their phenotypic and molecular variation. Plant Sys. Evol. 217: 313-332. (Pubitemid 29319440)
33. Tanaka, K., K. Fukunaga, Y. Akashi, H. Nishida, K. Kato and M. T. Khaing. 2006. Polyphyletic origin of cultivated melon inferred from analysis of its chloroplast genome. Cucurbitaceae 2006: 372-379.
34. Tanaka, K., A. Nishitani, Y. Akashi, H. Nishida, H. Yoshino and K. Kato. 2007. Molecular characterization of South and East Asian melon, Cucumis melo L., and the origin of group Conomon var. makuwa and var. conomon revealed by RAPD analysis. Euphytica 153: 233-247. (Pubitemid 46044685)
35. Weir, B. S. 1996. Genetic data analysis II. Sinauer Associate Inc. Publisher, Massachusetts.
36. Wu, M. Z. 1982. Genetic resources of thick-skinned melon collected from Turpan Depression and their utilization. China Fruits 1982: 28-33 (In Chinese).
37. Yashiro, K., H. Iwata, Y. Akashi, K. Tomita, M. Kuzuya, Y. Tsumura and K. Kato. 2005. Genetic relationship among East and South Asian melon (Cucumis melo L.) revealed by AFLP analysis. Breed. Sci. 55: 197-206. (Pubitemid 40856399)
38. Yi, S. S., Y. Akashi, K. Tanaka, T. T. Cho, M. T. Khaing, H. Yoshino, H. Nishida, T. Yamamoto, K. Win and K. Kato. 2009. Molecular analysis of genetic diversity in melon landraces (Cucumis melo L.) from Myanmar and their relationship with melon germplasm from East and South Asia. Genet. Resour. Crop Evol. 56: 1149-1161.