Genetic alteration with variable intron/exon organization amongst five PI-homoeologous genes in Platanus acerifolia

Gene

Volumn 473, Issue 2, 2011, Pages 82-91

  Zhang, Jiaqi ^a   Guo, Cong ^a   Liu, Guofeng ^a   Li, Zhineng ^a,b   Li, Xiaomei ^a   Bao, Manzhu ^a  

^a HUAZHONG AGRICULTURAL UNIVERSITY   (China)

^b Wuhan Institute of Botany Chinese Academy of Sciences   (China)

Author keywords

Alternative splicing; Flower development; K domain; Platanus acerifolia; Processed retrogenes

Indexed keywords

POLYPEPTIDE;

ALTERNATIVE RNA SPLICING; ARTICLE; EXON; FLOWER DEVELOPMENT; GENE DOSAGE; GENE EXPRESSION; GENE FUNCTION; GENE ISOLATION; GENE SEQUENCE; GENE STRUCTURE; GENETIC CODE; GENETIC TRANSCRIPTION; GENOME; HETEROLOGOUS EXPRESSION; IN VITRO STUDY; INFLORESCENCE; INTRON; MORPHOLOGICAL TRAIT; MUTATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PLATANUS ACERIFOLIA; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; TREE;

ALTERNATIVE SPLICING; ANGIOSPERMS; EXONS; FLOWERS; GENES, PLANT; INTRONS; PHYLOGENY;

ANTIRRHINUM MAJUS; ARABIDOPSIS THALIANA; PLATANUS X ACERIFOLIA;

EID: 79551689086     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2010.11.005     Document Type: Article

References (41)

1. Berbel A., Navarro C., Ferrandiz C., Canas L.A., Beltran J.-P., Madueno F. Functional conservation of PISTILLATA activity in a pea homolog lacking the PI motif. Plant Physiol. 2005, 139:174-185.
2. Bowman J.L., Smyth D.R., Meyerowitz E.M. Genes directing flower development in Arabidopsis. Plant Cell 1989, 1:37-52.
3. Coen E.S., Meyerowitz E.M. The war of the whorls: genetic interactions controlling flower development. Nature 1991, 353:31-37.
4. Colombo L., Franken J., Koetje E., van Went J., Dons H.J.M., Angenent G.C., et al. The petunia MADS box gene FBP11 determines ovule identity. Plant Cell 1995, 7:1859-1868.
5. Davies B., Di Rosa A., Eneva T., Saedler H., Sommer H. Alteration of tobacco floral organ identity by expression of combinations of Antirrhinum MADS-box genes. Plant J. 1996, 10:663-677.
6. De Bodt S., Raes J., Florquin K., Rombauts S., Rouzé P., Theißen G., et al. Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants. J. Mol. Evol. 2003, 56:573-586.
7. Ferrario S., Immink R.G.H., Angenent G.C. Conservation and diversity in flower land. Curr. Opin. Plant Biol. 2004, 7:84-91.
8. Goto K., Meyerowitz E.M. Function and regulation of the Arabidopsis floral homeotic gene PISTILLATA. Genes Dev. 1994, 8:1548-1560.
9. Harrison P.M., Gerstein M. Studying genomes through the aeons: protein families, pseudogenes and proteome evolution. J. Mol. Biol. 2002, 318:1155-1174.
10. Horsch R.B., Fry J.E., Hoffmann N.L., Eichholtz D., Rogers S.G., Fraley R.T. A simple and general method for transferring genes into plants. Science 1985, 227:1229-1231.
11. Jack T., Brockman L.L., Meyerowitz E.M. The homeotic gene APETALA3 of Arabidopsis thaliana encodes a MADS box and is expressed in petals and stamens. Cell 1992, 68:683-697.
12. Jack T., Fox G.L., Meyerowitz E.M. Arabidopsis homeotic gene APETALA3 ectopic expression: transcriptional and posttranscriptional regulation determine floral organ identity. Cell 1994, 76:703-716.
13. Järvinen P., Lemmetyinen J., Savolainen O., Sopanen T. DNA sequence variation in BpMADS2 gene in two populations of Betula pendula. Mol. Ecol. 2003, 12:369-384.
14. Johansen B., Pedersen L.B., Skipper M., Frederiksen S. MADS-box gene evolution-structure and transcription patterns. Mol. Phylogenet. Evol. 2002, 23:458-480.
15. Kofuji R., Sumikawa N., Yamasaki M., Kondo K., Ueda K., Ito M., et al. Evolution and divergence of the MADS-box gene family based on genome-wide expression analyses. Mol. Biol. Evol. 2003, 20:1963-1977.
16. Kramer E.M., Dorit R.L., Irish V.F. Molecular evolution of genes controlling petal and stamen development: duplication and divergence within the APETALA3 and PISTILLATA MADS-box gene lineages. Genetics 1998, 149:765-783.
17. Krizek B.A., Meyerowitz E.M. The Arabidopsis homeotic genes APETALA3 and PISTILLATA are sufficient to provide the B class organ identity function. Development 1996, 122:11-22.
18. Krizek B.A., Meyerowitz E.M. Mapping the protein regions responsible for the functional specificities of the Arabidopsis MADS domain organ-identity proteins. Proc. Natl Acad. Sci. USA 1996, 93:4063-4070.
19. Li Z., Liu G., Zhang J., Bao M. Extraction of high-quality tissue-specific RNA from London plane trees (Platanus acerifolia), permitting the construction of a female inflorescence cDNA library. Funct. Plant Biol. 2008, 35:159-165.
20. Münster T., Ursula Wingen L., Faigl W., Werth S., Saedler H., Theißen G. Characterization of three GLOBOSA-like MADS-box genes from maize: evidence for ancient paralogy in one class of floral homeotic B-function genes of grasses. Gene 2001, 262:1-13.
21. Ng M., Yanofsky M.F. Function and evolution of the plant MADS-box gene family. Nat. Rev. Genet. 2001, 2:186-195.
22. Pelaz S., Ditta G.S., Baumann E., Wisman E., Yanofsky M.F. B and C floral organ identity functions require SEPALLATA MADS-box genes. Nature 2000, 405:200-203.
23. Piwarzyk E., Yang Y., Jack T. Conserved C-terminal motifs of the Arabidopsis proteins APETALA3 and PISTILLATA are dispensable for floral organ identity function. Plant Physiol. 2007, 145:1495-1505.
24. Poupin M.J., Federici F., Medina C., Matus J.T., Timmermann T., Arce-Johnson P. Isolation of the three grape sub-lineages of B-class MADS-box TM6, PISTILLATA and APETALA3 genes which are differentially expressed during flower and fruit development. Gene 2007, 404:10-24.
25. Riechmann J.L., Krizek B.A., Meyerowitz E.M. Dimerization specificity of Arabidopsis MADS domain homeotic proteins APETALA1, APETALA3, PISTILLATA, and AGAMOUS. Proc. Natl Acad. Sci. USA 1996, 93:4793-4798.
26. Riechmann J.L., Wang M., Meyerowitz E.M. DNA-binding properties of Arabidopsis MADS domain homeotic proteins APETALA1, APETALA3, PISTILLATA and AGAMOUS. Nucl. Acids Res. 1996, 24:3134-3141.
27. Shore P., Sharrocks A.D. The MADS-box family of transcription factors. Eur. J. Biochem. 1995, 229:1-13.
28. Skipper M. Genes from the APETALA3 and PISTILLATA lineages are expressed in developing vascular bundles of the tuberous rhizome, flowering stem and flower primordia of Eranthis hyemalis. Ann. Bot. 2002, 89:83-88.
29. Soares M.B., Schon E., Henderson A., Karathanasis S.K., Cate R., Zeitlin S., et al. RNA-mediated gene duplication: the rat preproinsulin I gene is a functional retroposon. Mol. Cell. Biol. 1985, 5:2090-2103.
30. Subiza J., Cabrera M., Valdivieso R., Subiza J.L., Jerez M., Jiménez J.A., et al. Seasonal asthma caused by airborne Platanus pollen. Clin. Exp. Allergy 1994, 24:1123-1129.
31. Tamura K., Dudley J., Nei M., Kumar S. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
32. Theißen G. Development of floral organ identity: stories from the MADS house. Curr. Opin. Plant Biol. 2001, 4:75-85.
33. Theißen G., Saedler H. Floral quartets. Nature 2001, 409:469-471.
34. Tröbner W., Ramirez L., Motte P., Hue I., Huijser P., Lönnig W.E., et al. GlOBOSA: a homeotic gene which interacts with DEFICIENS in the control of Antirrhinum floral organogenesis. EMBO J. 1992, 11:4693-4704.
35. Vandenbussche M., Zethof J., Souer E., Koes R., Tornielli G.B., Pezzotti M., et al. Toward the analysis of the petunia MADS box gene family by reverse and forward transposon insertion mutagenesis approaches: B, C, and D floral organ identity functions require SEPALLATA-like MADS box genes in petunia. Plant Cell 2003, 15:2680-2693.
36. Vanin E.F. Processed pseudogenes: characteristics and evolution. Annu. Rev. Genet. 1985, 19:253-272.
37. Varela S., Subiza J., Subiza J.L., Rodríguez R., García B., Jerez M., et al. Platanus pollen as an important cause of pollinosis. J. Allergy Clin. Immun. 1997, 100:748-754.
38. Yang Y., Fanning L., Jack T. The K domain mediates heterodimerization of the Arabidopsis floral organ identity proteins APETALA3 and PISTILLATA. Plant J. 2003, 33:47-59.
39. Yanofsky M.F. Floral meristems to floral organs: genes controlling early events in Arabidopsis flower development. Annu. Rev. Plant Physiol. Plant Mol. Biol. 1995, 46:167-188.
40. Yao J., Dong Y., Morris B.A.M. Parthenocarpic apple fruit production conferred by transposon insertion mutations in a MADS-box transcription factor. Proc. Natl Acad. Sci. USA 2001, 98:1306-1311.
41. Zhang B., Su X., Zhou X. A MADS-box gene of Populus deltoides expressed during flower development and in vegetative organs. Tree Physiol. 2008, 28:929-934.