Simulated nitrogen deposition affects community structure of arbuscular mycorrhizal fungi in northern hardwood forests

Molecular Ecology

Volumn 20, Issue 4, 2011, Pages 799-811

  Van Diepen, Linda T A ^a   Lilleskov, Erik A ^b   Pregitzer, Kurt S ^c  

^a MICHIGAN TECHNOLOGICAL UNIVERSITY   (United States)

^b USDA FOREST SERVICE   (United States)

^c UNIVERSITY OF IDAHO   (United States)

Author keywords

arbuscular mycorrhizal fungi; community structure; forest; nitrogen; phylogeny; ribosomal DNA; sugar maple (Acer saccharum)

Indexed keywords

FUNGAL DNA; NITROGEN; RNA 18S;

ACER; ARTICLE; BIODIVERSITY; CLASSIFICATION; DNA SEQUENCE; GENETICS; GLOMEROMYCOTA; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MICROBIOLOGY; MYCORRHIZA; PHYLOGENY; PLANT ROOT; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; TREE;

ACER; BIODIVERSITY; DNA, FUNGAL; GLOMEROMYCOTA; MYCORRHIZAE; NITROGEN; PHYLOGENY; PLANT ROOTS; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; RNA, RIBOSOMAL, 18S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; TREES;

ACAULOSPORA; ACER; ACER SACCHARUM; ARBUSCULAR; FUNGI; GLOMUS; OTUS;

EID: 79551668705     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2010.04969.x     Document Type: Article

References (54)

1. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ, (1990) Basic Local Alignment Search Tool. Journal of Molecular Biology, 215, 403-410.
2. Anderson MJ, (2004) CAP: A FORTRAN Computer Program for Canonical Analysis of Principal Coordinates. Department of Statistics, University of Auckland, New Zealand.
3. Anderson MJ, (2005) PERMANOVA: A FORTRAN Computer Program for Permutational Multivariate Analysis of Variance. Department of Statistics, University of Auckland, New Zealand.
4. Burton AJ, Pregitzer KS, Reed DD, (1991) Leaf area and foliar biomass relationships in northern hardwood forests located along an 800 km acid deposition gradient. Forest Science, 37, 1041-1059.
5. - addition reduces soil respiration in northern hardwood forests. Global Change Biology, 10, 1080-1091.
6. Colwell RK, (2005) EstimateS: Statistical Estimation of Species Richness and Shared Species from Samples, Version 7.5. User's Guide and application published at: http://viceroy.eeb.uconn.edu/estimates.
7. Colwell RK, Coddington JA, (1994) Estimating terrestrial biodiversity through extrapolation. Philosophical Transactions of the Royal Society of London, Series B, 345, 101-118.
8. Colwell RK, Mao CX, Chang J, (2004) Interpolating, extrapolating, and comparing incidence-based species accumulation curves. Ecology, 85, 2717-2727.
9. Corkidi L, Rowland DL, Johnson NC, Allen EB, (2002) Nitrogen fertilization alters the functioning of arbuscular mycorrhizas at two semiarid grasslands. Plant and Soil, 240, 299-310.
10. Coughlan AP, Dalpé Y, Lapointe L, Piché Y, (2000) Soil pH-induced changes in root colonization, diversity, and reproduction of symbiotic arbuscular mycorrhizal fungi from healthy and declining maple forests. Canadian Journal of Forest Research, 30, 1543-1554.
11. Egerton-Warburton LM, Allen EB, (2000) Shifts in arbuscular mycorrhizal communities along an anthropogenic nitrogen deposition gradient. Ecological applications, 10, 484-496.
12. Egerton-Warburton LM, Johnson NC, Allen EB, (2007) Mycorrhizal community dynamics following nitrogen fertilization: a cross-site test in five grasslands. Ecological Monographs, 77, 527-544.
13. Eom A-H, Hartnett DC, Wilson GWT, Figge DAH, (1999) The effect of fire, mowing and fertilizer amendment on arbuscular mycorrhizas in tallgrass prairi. American Midland Naturalist, 142, 55-70.
14. Hall TA, (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95-98.
15. Helgason T, Daniell TJ, Husband R, Fitter AH, Young JPW, (1998) Ploughing up the wood-wide web? Nature, 394, 431.
16. Helgason T, Fitter AH, Young JPW, (1999) Molecular diversity of arbuscular mycorrhizal fungi colonizing Hyacinthoides non-scripta (Bluebell) in a seminatural woodland. Molecular Ecology, 8, 659-666.
17. Helgason T, Merryweather JW, Denison J, Wilson P, Young JPW, Fitter AH, (2002) Selectivity and functional diversity in arbuscular mycorrhizas of co-occurring fungi and plants from a temperate deciduous woodland. Journal of Ecology, 90, 371-384.
18. Husband R, Herre EA, Turner SL, Gallery R, Young JPW, (2002) Molecular diversity of arbuscular mycorrhizal fungi and patterns of host association over time and space in a tropical forest. Molecular Ecology, 11, 2669-2678.
19. Jakobsen I, Abbott LK, Robson AD, (1992) External hyphae of vesicular-arbuscular mycorrhizal fungi associated with Trifolium subterraneum L. Spread of hyphae and phosphorus inflow into roots. The New Phytologist, 120, 371-380.
20. Johnson NC, (1993) Can fertilization of soil select less mutualistic mycorrhizae? Ecological applications, 3, 749-757.
21. Johnson DW, Richter DD, Miegroet H, Cole DW, Kelly JM, (1986) Sulfur cycling in five forest ecosystems. Water, Air, & Soil Pollution, 30, 965-979.
22. Jumpponen A, Trowbridge J, Mandyam K, Johnson L, (2005) Nitrogen enrichment causes minimal changes in arbuscular mycorrhizal colonization but shifts community composition-evidence from rDNA data. Biology and Fertility of Soils, 41, 217-224.
23. Lansing JL, (2003) Comparing Arbuscular and Ectomycorrhizal Fungal Communities in Seven North American Forests and Their Response to Nitrogen Fertilization. PhD Thesis, University of California, Davis, CA, USA.
24. Lerat S, (2003) Study of the Relations Between Carbon Source and Sinks of an Arbuscular Endomycorrhizal Symbiosis. PhD Thesis, Université Laval, Québec, Canada.
25. Lilleskov EA, Parrent JL, (2007) Can we develop general predictive models of mycorrhizal fungal community-environment relationships? New Phytologist, 174, 250-256.
26. Lovett GM, Mitchell MJ, (2004) Sugar maple and nitrogen cycling in the forests of eastern North America. Frontiers in Ecology and the Environment, 2, 81-88.
27. Lozupone C, Hamady M, Knight R, (2006) UniFraca - An Online Tool for Comparing Microbial Community Diversity in a Phylogenetic Context. BMC Bioinformatics, 7, 371.
28. Minorsky PV, (2003) The Hot and the Classic. The decline of sugar maples (Acer Saccharum). Plant Physiology, 133, 441-442.
29. Moutoglis P, Widden P, (1995) Vesicular-arbuscular mycorrhizal spore populations in sugar maple (Acer saccharum marsh. L.) forests. Mycorrhiza, 6, 91-97.
30. Munkvold L, KjÃ?ller R, Vestberg M, Rosendahl S, Jakobsen I, (2004) High functional diversity within species of arbuscular mycorrhizal fungi. New Phytologist, 164, 357-364.
31. NADP (2006) National Atmospheric Deposition Program (NRSP-3). NADP Program Office, Illinois State Water Survey, IL, USA.
32. Oksanen J, Blanchet FG, Kindt R, et al. (2010) Vegan: Community Ecology Package, Version 1.17-3.
33. Ã?pik M, Moora M, Liira J, Zobel M, (2006) Composition of root-colonizing arbuscular mycorrhizal fungal communities in different ecosystems around the globe. Journal of Ecology, 94, 778-790.
34. Porras-Alfaro A, Herrera J, Natvig DO, Sinsabaugh RL, (2007) Effect of long-term nitrogen fertilization on mycorrhizal fungi associated with a dominant grass in a semiarid grassland. Plant and Soil, 296, 65-75.
35. Pregitzer KS, DeForest JL, Burton AJ, Allen MF, Ruess RW, Hendrick RL, (2002) Fine root architecture of nine North American trees. Ecological Monographs, 72, 293-309.
36. Pregitzer KS, Zak DR, Burton AJ, Ashby JA, MacDonald NW, (2004) Chronic nitrate additions dramatically increase the export of carbon and nitrogen from northern hardwood ecosystems. Biogeochemistry, 68, 179-197.
37. Pregitzer KS, Burton AJ, Zak DR, Talhelm AF, (2008) Simulated chronic nitrogen deposition increases carbon storage in northern temperate forests. Global Change Biology, 14, 142-153.
38. Redecker D, Morton JB, Bruns TD, (2000) Ancestral lineages of arbuscular mycorrhizal fungi (Glomales). Molecular Phylogenetics and Evolution, 14, 276-284.
39. Sanders IR, (2004) Intraspecific genetic variation in arbuscular mycorrhizal fungi and its consequences for molecular biology, ecology, and development of inoculum. Canadian Journal of Botany, 82, 1057-1062.
40. Schwarzott D, Walker C, SchüÃ?ler A, (2001) Glomus, the Largest Genus of the Arbuscular Mycorrhizal Fungi (Glomales), Is Nonmonophyletic. Molecular Phylogenetics and Evolution, 21, 190-197.
41. Simon L, LaLonde M, Bruns TD, (1992) Specific Amplification of 18S Fungal Ribosomal Genes from Vesicular-Arbuscular Endomycorrhizal Fungi Colonizing Roots. Applied and Environmental Microbiology, 58, 291-295.
42. Smith SE, Read DJ, 2008, Mycorrhizal Symbiosis, 3rd edn. Academic Press, New York.
43. Swofford DL, (1998) PAUP* Phylogenetic Analysis Using Parsimony (and Other Methods), Version 4. Sinauer Associates, Sunderland, Massachusetts.
44. Team RDC (2010) R: A Language and Environment for Statistical Computing, Version 2.10.0. R Foundation for Statistical Computing, Vienna, Austria,.
45. Thompson JD, Higgins DG, Gibson TJ, (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Research, 22, 4673-4680.
46. Treseder KK, (2004) A meta-analysis of mycorrhizal responses to nitrogen, phosphorus, and atmospheric CO2 in field studies. New Phytologist, 164, 347-355.
47. Treseder KK, Allen MF, (2002) Direct nitrogen and phosphorus limitation of arbuscular mycorrhizal fungi: a model and field test. New Phytologist, 155, 507-515.
48. Van der Heijden MAG, Scheublin TJ, (2007) Functional traits in mycorrhizal ecology: their use for predicting the impact of arbuscular mycorrhizal fungal communities on plant growth and ecosystem functioning. New Phytologist, 174, 244-250.
49. Van der Heijden MGA, Klironomos JN, Ursic M, et al. (1998) Mycorrhizal fungal diversity determines plant biodiversity, ecosystem variability and productivity. Nature, 396, 69-72.
50. Van Diepen LTA, Lilleskov EA, Pregitzer KS, Miller RM, (2007) Decline of arbuscular mycorrhizal fungi in northern hardwood forests exposed to chronic nitrogen additions. New Phytologist, 176, 175-183.
51. Van Diepen LTA, Lilleskov EA, Pregitzer KS, Miller RM, (2010) Simulated nitrogen deposition causes a decline of intra- and extraradical abundance of arbuscular mycorrhizal fungi and changes in microbial community structure in northern hardwood forests. Ecosystems, 15, 683-695.
52. Vandenkoornhuyse P, Husband R, Daniel TJ, et al. (2002) Arbuscular mycorrhizal community composition associated with two plant species in a grassland ecosystem. Molecular Ecology, 11, 1555-1564.
53. Wirsel SGR, (2004) Homogenous stands of a wetland grass harbour diverse consortia of arbuscular mycorrhizal fungi. FEMS Microbiology Ecology, 48, 129-138.
54. - deposition increases soil organic matter by slowing decomposition. Ecological Applications, 18, 2016-2027.