History shaped the geographic distribution of genomic admixture on the island of puerto rico

PLoS ONE

Volumn 6, Issue 1, 2011, Pages

  Via, Marc ^a,b,h   Gignoux, Christopher R ^b   Roth, Lindsey A ^a   Fejerman, Laura ^b,c   Galanter, Joshua ^a   Choudhry, Shweta ^b   Toro Labrador, Gladys ^d   Viera Vera, Jorge ^e   Oleksyk, Taras K ^e   Beckman, Kenneth ^f   Ziv, Elad ^b,c   Risch, Neil ^b,g   Burchard, Esteban González ^a,b   Martínez Cruzado, Juan Carlos ^d  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

^d UNIVERSITY OF PUERTO RICO   (Puerto Rico)

^e UNIVERSITY OF PUERTO RICO   (Puerto Rico)

^f UNIVERSITY OF MINNESOTA   (United States)

^g DIVISION OF RESEARCH   (United States)

^h UNIVERSITY OF BARCELONA   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

AMERICAN INDIAN; ARTICLE; CAUCASIAN; CONTROLLED STUDY; ETHNIC DIFFERENCE; GENETIC CORRELATION; GENETIC MARKER; GENETIC VARIABILITY; GENOMICS; GENOTYPE; GEOGRAPHIC DISTRIBUTION; HUMAN; NEGRO; POPULATION GENETICS; PUERTO RICO; SOCIAL STATUS; ETHNOLOGY; GENETICS; GEOGRAPHY; HUMAN GENOME; RACE; SOCIAL BEHAVIOR;

CONTINENTAL POPULATION GROUPS; GENETICS, POPULATION; GENOME, HUMAN; GEOGRAPHY; HUMANS; PUERTO RICO; SOCIAL BEHAVIOR;

EID: 79551645516     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0016513     Document Type: Article

References (48)

1. Menozzi P, Piazza A, Cavalli-Sforza L (1978) Synthetic maps of human gene frequencies in Europeans. Science 201: 786-792.
2. Piazza A, Menozzi P, Cavalli-Sforza LL (1981) Synthetic gene frequency maps of man and selective effects of climate. Proc Natl Acad Sci U S A 78: 2638-2642.
3. King R, Underhill PA (2002) Congruent distribution of Neolithic painted pottery and ceramic figurines with Y-chromosome lineages. Antiquity 76: 707-714.
4. Henn BM, Gignoux CR, Feldman MW, Mountain JL (2009) Characterizing the time dependency of human mitochondrial DNA mutation rate estimates. Mol Biol Evol 26: 217-230.
5. Cavalli-Sforza LL, Menozzi P, Piazza A (1994) The history and geography of human genes. PrincetonN.J.: Princeton University Press xi, 541, 518.
6. Abdulla MA, Ahmed I, Assawamakin A, Bhak J, Brahmachari SK, et al. (2009) Mapping human genetic diversity in Asia. Science 326: 1541-1545.
7. Novembre J, Johnson T, Bryc K, Kutalik Z, Boyko AR, et al. (2008) Genes mirror geography within Europe. Nature 456: 98-101.
8. Auton A, Bryc K, Boyko AR, Lohmueller KE, Novembre J, et al. (2009) Global distribution of genomic diversity underscores rich complex history of continental human populations. Genome Res 19: 795-803.
9. Wang S, Ray N, Rojas W, Parra MV, Bedoya G, et al. (2008) Geographic patterns of genome admixture in Latin American Mestizos. PLoS Genet 4: e1000037.
10. Bryc K, Auton A, Nelson MR, Oksenberg JR, Hauser SL, et al. (2010) Genomewide patterns of population structure and admixture in West Africans and African Americans. Proc Natl Acad Sci U S A 107: 786-791.
11. Choudhry S, Coyle NE, Tang H, Salari K, Lind D, et al. (2006) Population stratification confounds genetic association studies among Latinos. Hum Genet 118: 652-664.
12. Risch N, Choudhry S, Via M, Basu A, Sebro R, et al. (2009) Ancestry-related assortative mating in Latino populations. Genome Biol 10: R132.
13. Gonzalez Burchard E, Borrell LN, Choudhry S, Naqvi M, Tsai HJ, et al. (2005) Latino populations: a unique opportunity for the study of race, genetics, and social environment in epidemiological research. Am J Public Health 95: 2161-2168.
14. Bryc K, Velez C, Karafet T, Moreno-Estrada A, Reynolds A, et al. (2010) Genome-wide patterns of population structure and admixture among Hispanic/ Latino populations. Proceedings of the National Academy of Sciences 107: 8954-8961.
15. Moscoso F (2008) Caciques, aldeas y población taína de Boriquén: (Puerto Rico) 1492-1582. San Juan, P.R.: Academia Puertorriqueña de la Historia. 246 p.
16. Klein HS (1986) African slavery in Latin America and the Caribbean. New York: Oxford University Press. 311 p. [313] leaves of plates.
17. Alvarez Nazario M (1974) El elemento afronegroide en el español de Puerto Rico: contribución al estudio del negro en América. San Juan de Puerto Rico: Instituto de Cultura Puertorriqueña. 489 p.
18. United States. Bureau of the Census (2001) Census 2000. Summary file 1 census of population and housing. WashingtonDC: U.S. Dept. of Commerce, Economics and Statistics Administration, Bureau of the Census. 1 DVD-ROM.
19. Salzano FM, Bortolini MC (2002) The evolution and genetics of Latin American populations. Cambridge; New York: Cambridge University Press. xvi, 512.
20. Telles E (1990) Phenotypic discrimination and income differences among Mexican Americans. Soc Sci Med 71: 682-693.
21. Arce CH, Murguia E, Frisbie WP (1987) Phenotype and life chances among Chicanos. Hisp J Behav Sci 9: 19-32.
22. Choudhry S, Burchard EG, Borrell LN, Tang H, Gomez I, et al. (2006) Ancestry-environment interactions and asthma risk among Puerto Ricans. Am J Respir Crit Care Med 174: 1088-1093.
23. Gravlee CC, Non AL, Mulligan CJ (2009) Genetic ancestry, social classification, and racial inequalities in blood pressure in Southeastern Puerto Rico. PLoS One 4: e6821.
24. Caulfield T, Fullerton SM, Ali-Khan SE, Arbour L, Burchard EG, et al. (2009) Race and ancestry in biomedical research: exploring the challenges. Genome Med 1: 8.
25. Falush D, Stephens M, Pritchard JK (2003) Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164: 1567-1587.
26. Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155: 945-959.
27. Díaz Soler LM (2005) Historia de la esclavitud negra en Puerto Rico. [San Juan]: Editorial de la Universidad de Puerto Rico. 439 p. [435] leaves of plates.
28. Mintz SW (1953) The Culture History of a Puerto Rican Sugar Cane Plantation: 1876-1949. The Hispanic American Historical Review 33: 224-251.
29. Martinez-Cruzado JC, Toro-Labrador G, Viera-Vera J, Rivera-Vega MY, Startek J, et al. (2005) Reconstructing the population history of Puerto Rico by means of mtDNA phylogeographic analysis. Am J Phys Anthropol 128: 131-155.
30. Stolcke V (1974) Marriage, class and colour in nineteenth-century Cuba; a study of racial attitudes and sexual values in a slave society. [London, New York]: Cambridge University Press. x, 202.
31. Sanger JP, Gannett H, Wilcox WF (1900) 1899 census report of Puerto Rico. Washington, DC: Government Printing Office.
32. Martinez-Cruzado JC, Toro-Labrador G, Ho-Fung V, Estevez-Montero MA, Lobaina-Manzanet A, et al. (2001) Mitochondrial DNA analysis reveals substantial Native American ancestry in Puerto Rico. Hum Biol 73: 491-511.
33. Florez JC, Price AL, Campbell D, Riba L, Parra MV, et al. (2009) Strong association of socioeconomic status with genetic ancestry in Latinos: implications for admixture studies of type 2 diabetes. Diabetologia 52: 1528-1536.
34. Bedoya G, Montoya P, Garcia J, Soto I, Bourgeois S, et al. (2006) Admixture dynamics in Hispanics: a shift in the nuclear genetic ancestry of a South American population isolate. Proc Natl Acad Sci U S A 103: 7234-7239.
35. Marchini J, Cardon LR, Phillips MS, Donnelly P (2004) The effects of human population structure on large genetic association studies. Nat Genet 36: 512-517.
36. Silva-Zolezzi I, Hidalgo-Miranda A, Estrada-Gil J, Fernandez-Lopez JC, Uribe-Figueroa L, et al. (2009) Analysis of genomic diversity in Mexican Mestizo populations to develop genomic medicine in Mexico. Proc Natl Acad Sci U S A 106: 8611-8616.
37. Ellis NA, Ciocci S, Proytcheva M, Lennon D, Groden J, et al. (1998) The Ashkenazic Jewish Bloom syndrome mutation blmAsh is present in non-Jewish Americans of Spanish ancestry. Am J Hum Genet 63: 1685-1693.
38. Huizing M, Anikster Y, Fitzpatrick DL, Jeong AB, D'Souza M, et al. (2001) Hermansky-Pudlak syndrome type 3 in Ashkenazi Jews and other non-Puerto Rican patients with hypopigmentation and platelet storage-pool deficiency. Am J Hum Genet 69: 1022-1032.
39. Mullineaux LG, Castellano TM, Shaw J, Axell L, Wood ME, et al. (2003) Identification of germline 185delAG BRCA1 mutations in non-Jewish Americans of Spanish ancestry from the San Luis Valley, Colorado. Cancer 98: 597-602.
40. John EM, Miron A, Gong G, Phipps AI, Felberg A, et al. (2007) Prevalence of pathogenic BRCA1 mutation carriers in 5 US racial/ethnic groups. JAMA 298: 2869-2876.
41. Yaeger R, Avila-Bront A, Abdul K, Nolan PC, Grann VR, et al. (2008) Comparing genetic ancestry and self-described race in african americans born in the United States and in Africa. Cancer Epidemiol Biomarkers Prev 17: 1329-1338.
42. Gelpí Baíz E (2000) Siglo en blanco: estudio de la economia azucarera en el Puerto Rico del siglo XVI (1540-1612). San Juan, P.R.: Editorial de la Universidad de Puerto Rico. xviii, 414.
43. de Córdoba PT (1831) Memorias geográficas, históricas, económicas y estadísticas de la isla de Puerto Rico. San Juan: Oficina del Gobierno.
44. Moran PAP (1948) The interpretation of statistical maps. J R Stat Soc B 10: 243-251.
45. Getis A, Ord K (1992) The analysis of of spatial association by use of distance statistics. Geogr Anal 24: 189-206.
46. Isaaks EH, Srivastava RM (1989) Applied geostatistics. New York: Oxford University Press. xix, 561.
47. Relethford JH (2008) Geostatistics and spatial analysis in biological anthropology. Am J Phys Anthropol 136: 1-10.
48. Fotheringham AS, Brunsdon C, Charlton M (2002) Geographically weighted regression: the analysis of spatially varying relationships. Chichester, England; Hoboken, NJ, USA: Wiley. xii, 269.