메뉴 건너뛰기




Volumn 9, Issue 1, 2011, Pages 32-48

Finding all sorting tandem duplication random loss operations

Author keywords

Genome rearrangement; Permutation; Tandem duplication random loss; TDRL

Indexed keywords

BIOLOGICAL STUDIES; DUPLICATED GENES; EVOLUTIONARY HISTORY; GENE ORDERS; GENOME REARRANGEMENTS; MITOCHONDRIAL GENES; PERMUTATION; RANDOM LOSS; TANDEM DUPLICATION RANDOM LOSS; TDRL; THEORETICAL POINTS;

EID: 79551578902     PISSN: 15708667     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jda.2010.09.006     Document Type: Conference Paper
Times cited : (18)

References (24)
  • 1
    • 84957002571 scopus 로고    scopus 로고
    • Exploring the set of all minimal sequences of reversals - An application to test the replication-directed reversal hypothesis
    • Algorithms in Bioinformatics, Second International Workshop, WABI 2002, Proceedings, Springer
    • Y. Ajana, J.F. Lefebvre, E.R. Tillier, and N. El-Mabrouk Exploring the set of all minimal sequences of reversals - an application to test the replication-directed reversal hypothesis Algorithms in Bioinformatics, Second International Workshop, WABI 2002, Proceedings Lecture Notes in Computer Science vol. 2452 2002 Springer 300 315
    • (2002) Lecture Notes in Computer Science , vol.2452 , pp. 300-315
    • Ajana, Y.1    Lefebvre, J.F.2    Tillier, E.R.3    El-Mabrouk, N.4
  • 7
    • 33846673442 scopus 로고    scopus 로고
    • Using median sets for inferring phylogenetic trees
    • M. Bernt, D. Merkle, and M. Middendorf Using median sets for inferring phylogenetic trees Bioinformatics 23 2007 129 135
    • (2007) Bioinformatics , vol.23 , pp. 129-135
    • Bernt, M.1    Merkle, D.2    Middendorf, M.3
  • 8
    • 0001298772 scopus 로고    scopus 로고
    • The duplication/random loss model for gene rearrangement exemplified by mitochondrial genomes of deuterostome animals
    • Comparative Genomics: Empirical and Analytical Approaches to Gene Order Dynamics, Map Alignment and the Evolution of Gene Families
    • J.L. Boore The duplication/random loss model for gene rearrangement exemplified by mitochondrial genomes of deuterostome animals D. Sankoff, J.H. Nadeau, Comparative Genomics: Empirical and Analytical Approaches to Gene Order Dynamics, Map Alignment and the Evolution of Gene Families Computational Biology Series vol. 1 2000 Kluwer Academic Publishers 133 147
    • (2000) Computational Biology Series , vol.1 , pp. 133-147
    • Boore, J.L.1
  • 9
    • 59049100203 scopus 로고    scopus 로고
    • A variant of the tandem duplication - Random loss model of genome rearrangement
    • M. Bouvel, and D. Rossin A variant of the tandem duplication - random loss model of genome rearrangement Theoretical Computer Science 410 2009 847 858
    • (2009) Theoretical Computer Science , vol.410 , pp. 847-858
    • Bouvel, M.1    Rossin, D.2
  • 12
    • 0002986407 scopus 로고    scopus 로고
    • Duplication, rearrangement and reconciliation
    • Comparative Genomics: Empirical and Analytical Approaches to Gene Order Dynamics, Map Alignment and the Evolution of Gene Families
    • N. El-Mabrouk Duplication, rearrangement and reconciliation D. Sankoff, J.H. Nadeau, Comparative Genomics: Empirical and Analytical Approaches to Gene Order Dynamics, Map Alignment and the Evolution of Gene Families Computational Biology Series vol. 1 2000 Kluwer Academic Publishers 537 550
    • (2000) Computational Biology Series , vol.1 , pp. 537-550
    • El-Mabrouk, N.1
  • 13
    • 0010974144 scopus 로고    scopus 로고
    • American Mathematical Society
    • C.M. Grinstead, and J.L. Snell Introduction to Probability 2006 American Mathematical Society http://www.dartmouth.edu/~chance/teaching-aids/books- articles/probability-book/book.html
    • (2006) Introduction to Probability
    • Grinstead, C.M.1    Snell, J.L.2
  • 15
    • 0242414574 scopus 로고    scopus 로고
    • Evolution of the deep-sea gulper eel mitochondrial genomes: Large-scale gene rearrangements originated within the eels
    • J.G. Inoue, M. Miya, K. Tsukamoto, and M. Nishida Evolution of the deep-sea gulper eel mitochondrial genomes: Large-scale gene rearrangements originated within the eels Molecular Biology and Evolution 20 2003 1917 1924
    • (2003) Molecular Biology and Evolution , vol.20 , pp. 1917-1924
    • Inoue, J.G.1    Miya, M.2    Tsukamoto, K.3    Nishida, M.4
  • 16
    • 0036146407 scopus 로고    scopus 로고
    • Complete mtDNA sequences of two millipedes suggest a new model for mitochondrial gene rearrangements: Duplication and nonrandom loss
    • D.V. Lavrov, J.L. Boore, and W.M. Brown Complete mtDNA sequences of two millipedes suggest a new model for mitochondrial gene rearrangements: Duplication and nonrandom loss Molecular Biology and Evolution 19 2002 163 169
    • (2002) Molecular Biology and Evolution , vol.19 , pp. 163-169
    • Lavrov, D.V.1    Boore, J.L.2    Brown, W.M.3
  • 17
    • 28944449814 scopus 로고    scopus 로고
    • A hotspot of gene order rearrangement by tandem duplication and random loss in the vertebrate mitochondrial genome
    • D.S. Mauro, D.J. Gower, R. Zardoya, and M. Wilkinson A hotspot of gene order rearrangement by tandem duplication and random loss in the vertebrate mitochondrial genome Molecular Biology and Evolution 23 2006 227 234
    • (2006) Molecular Biology and Evolution , vol.23 , pp. 227-234
    • Mauro, D.S.1    Gower, D.J.2    Zardoya, R.3    Wilkinson, M.4
  • 18
    • 22044450491 scopus 로고    scopus 로고
    • The phylogenetic position of toadfishes (order batrachoidiformes) in the higher ray-finned fish as inferred from partitioned Bayesian analysis of 102 whole mitochondrial genome sequences
    • M. Miya, T.P. Satoh, and M. Nishida The phylogenetic position of toadfishes (order batrachoidiformes) in the higher ray-finned fish as inferred from partitioned Bayesian analysis of 102 whole mitochondrial genome sequences Biological Journal of the Linnean Society 85 2005 289 306
    • (2005) Biological Journal of the Linnean Society , vol.85 , pp. 289-306
    • Miya, M.1    Satoh, T.P.2    Nishida, M.3
  • 19
    • 78651235607 scopus 로고    scopus 로고
    • Parking functions, labeled trees and DCJ sorting scenarios
    • Comparative Genomics, Springer
    • A. Ouangraoua, and A. Bergeron Parking functions, labeled trees and DCJ sorting scenarios Comparative Genomics Lecture Notes in Computer Science vol. 5817 2009 Springer 24 35
    • (2009) Lecture Notes in Computer Science , vol.5817 , pp. 24-35
    • Ouangraoua, A.1    Bergeron, A.2
  • 22
    • 0242690450 scopus 로고    scopus 로고
    • An algorithm to enumerate sorting reversals for signed permutations
    • A.C. Siepel An algorithm to enumerate sorting reversals for signed permutations Journal of Computational Biology 10 2003 575 597
    • (2003) Journal of Computational Biology , vol.10 , pp. 575-597
    • Siepel, A.C.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.