Automated analysis of fluorescence lifetime imaging microscopy (FLIM) data based on the laguerre deconvolution method

IEEE Transactions on Biomedical Engineering

Volumn 58, Issue 1, 2011, Pages 172-181

  Pande, Paritosh ^a   Jo, Javier A ^a  

^a TEXAS A AND M UNIVERSITY   (United States)

Author keywords

Fluorescence lifetime imaging microscopy (FLIM); in vivo imaging; Laguerre expansion of the kernel technique; time deconvolution

Indexed keywords

AUTOMATED ANALYSIS; AUTOMATIC ESTIMATION; COMPUTATIONAL SPEED; DECONVOLUTION METHOD; FLUORESCENCE DECAYS; FLUORESCENCE LIFETIME IMAGING MICROSCOPY; FLUORESCENCE LIFETIMES; FREE PARAMETERS; HEURISTIC APPROACH; IMPULSE RESPONSE FUNCTIONS; IN VIVO IMAGING; IN-VIVO; INTRINSIC FLUORESCENCE; LAGUERRE; LAGUERRE BASIS; LAGUERRE EXPANSION OF THE KERNEL TECHNIQUE; LINEAR EXPANSIONS; NONLINEAR LEAST-SQUARES OPTIMIZATION; ORDERS OF MAGNITUDE; ORTHONORMAL; SIMULTANEOUS ESTIMATION; STANDARD ALGORITHMS; SYSTEMATIC MODELS; TIME CONVOLUTION; TIME DECAY; TIME DECONVOLUTION;

DECONVOLUTION; ESTIMATION; EXPANSION; HEURISTIC METHODS; IMPULSE RESPONSE; PIXELS; SPATIAL DISTRIBUTION;

FLUORESCENCE;

FLUORESCENT DYE; FLUOROPHORE; UNCLASSIFIED DRUG;

ALGORITHM; ARTICLE; AUTOMATION; CALCULATION; FLUORESCENCE LIFETIME IMAGING MICROSCOPY; FLUORESCENCE MICROSCOPY; IMPULSE RESPONSE FUNCTION; KERNEL METHOD; LAGUERRE DECONVOLUTION; MATHEMATICAL COMPUTING; NERVE CONDUCTION; SPATIAL AUTOCORRELATION ANALYSIS;

ALGORITHMS; CAROTID STENOSIS; CORONARY VESSELS; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; LEAST-SQUARES ANALYSIS; LUMINESCENT AGENTS; MICROSCOPY, FLUORESCENCE; REPRODUCIBILITY OF RESULTS; STATISTICS, NONPARAMETRIC;

EID: 79551565281     PISSN: 00189294     EISSN: None     Source Type: Journal    
DOI: 10.1109/TBME.2010.2084086     Document Type: Article

References (19)

1. J. R. Lakowicz, H. Szmacinski, K. Nowaczyk,W. J. Lederer, M. S. Kirby, and M. L. Johnson, "Fluorescence lifetime imaging of intracellular calcium in COS cells using Quin-2," Cell Calcium, vol. 15, no. 1, pp. 7-27, Jan. 1994.
2. N. P. Galletly, J. McGinty, C. Dunsby, F. Teixeira, J. Requejo-Isidro, I. Munro, D. S. Elson, M. A. A. Neil, A. C. Chu, P. M.W. French, and G.W. Stamp, "Fluorescence lifetime imaging distinguishes basal cell carcinoma from surrounding uninvolved skin," British J. Dermatol., vol. 159, no. 1, pp. 152-161, 2008.
3. M. C. Skala, K. M. Riching, A. Gendron-Fitzpatrick, J. Eickhoff, K. W. Eliceiri, J. G. White, andN.Ramanujam, "In vivo multiphoton microscopy of NADH and FAD redox states, fluorescence lifetimes, and cellular morphology in precancerous epithelia," Proc.Natl. Acad. Sci.U.S.A., vol. 104, no. 49, pp. 19494-19499, Dec. 2007.
4. J. Lakowicz, Principles of Fluorescence Spectroscopy, 3rd ed. New York: Springer, 2006.
5. I. H. M. V. Stokkum, D. S. Larsen, and R. V. Grondelle, "Global and target analysis of time-resolved spectra," Biochimica et Biophysica Acta (BBA)-Bioenerg., vol. 1657, no. 2-3, pp. 82-104, 2004.
6. W. R. Ware, L. J. Doemeny, and T. L. Nemzek, "Deconvolution of fluorescence and phosphorescence decay curves. Least-squares method," J. Phys. Chem., vol. 77, no. 17, pp. 2038-2048, 1973.
7. K. C. Lee, J. Siegel, S. E. Webb, S. Ĺevêque-Fort, M. J. Cole, R. Jones, K. Dowling, M. J. Lever, and P. M. French, "Application of the stretched exponential function to fluorescence lifetime imaging," Biophys J, vol. 81, no. 3, pp. 1265-1274, Sep. 2001.
8. V.K.Ramanujan, J.A. Jo, G. Cantu, andB.A.Herman, "Spatially resolved fluorescence lifetime mapping of enzyme kinetics in living cells," J. Microsc., vol. 230, no. 3, pp. 329-338, Jun. 2008.
9. J. A. Jo, Q. Y. Fang, and L. Marcu, "Ultrafast method for the analysis of fluorescence lifetime imaging microscopy data based on the Laguerre expansion technique," IEEE J. Sel. Topics Quantum Electron., vol. 11, no. 4, pp. 835-845, Jul./Aug. 2005.
10. V. Z. Marmarelis, "Identification of nonlinear biological systems using Laguerre expansions of kernels," Ann. Biomed. Eng., vol. 21, no. 6, pp. 573-889, Nov./Dec. 1993.
11. M. C. B.-Biggs, Nonlinear optimization with financial applications, 1st ed. New York: Springer, 2005.
12. A. S. Dabir, C. A. Trivedi, Y. Ryu, P. Pande, and J. A. Jo, "Fully automated deconvolution method for on-line analysis of time-resolved fluorescence spectroscopy data based on an iterative Laguerre expansion technique," J. Biomed. Opt., vol. 14, no. 2, pp. 024030-1-024030-13, Mar./Apr. 2009.
13. D. S. Elson, J. A. Jo, and L. Marcu, "Miniaturized side-viewing imaging probe for fluorescence lifetime imaging (FLIM): Validation with fluorescence dyes, tissue structural proteins and tissue specimens," New J. Phys., vol. 9, no. 5, p. 127, 2007.
14. N. Ramanujam, "Fluorescence spectroscopy of neoplastic and nonneoplastic tissues," Neoplasia, vol. 2, no. 1-2, pp. 89-117, Jan.-Apr. 2000.
15. R. R.-Kortum and E. S. -Muraca, "Quantitative optical spectroscopy for tissue diagnosis," Annu. Rev. Phys. Chem., vol. 47, no. 1, pp. 555-606, 1996.
16. Q. Y. Fang, T. Papaioannou, J. A. Jo, R. Vaitha, K. Shastry, and L. Marcu, "Time-domain laser-induced fluorescence spectroscopy apparatus for clinical diagnostics," Rev. Sci. Instrum., vol. 75, no. 1, pp. 151-162, Jan. 2004.
17. P. D. Olivier, "Online system identification using laguerre series," IEEE Proc.-Control Theory Appl., vol. 141, no. 4, pp. 249-254, 1994.
18. B.Wahlberg, "System identification using Laguerre models," IEEE Trans. Autom. Control, vol. 36, no. 5, pp. 551-562, 1991.
19. C. Zervos, P. R B́elanger, and G. A. Dumont, "On PID controller tuning using orthonormal series identification," Automatica, vol. 24, no. 2, pp. 165-175, 1987.