BYPASS1: Synthesis of the mobile root-derived signal requires active root growth and arrests early leaf development

BMC Plant Biology

Volumn 11, Issue , 2011, Pages

  Van Norman, Jaimie M ^b   Murphy, Caroline ^a   Sieburth, Leslie E ^a  

^a UNIVERSITY OF UTAH   (United States)

^b DUKE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS;

ARABIDOPSIS PROTEIN; BYPASS1 PROTEIN, ARABIDOPSIS; GLUTATHIONE; PHYTOHORMONE; REACTIVE OXYGEN METABOLITE;

ARABIDOPSIS; ARTICLE; BIOSYNTHESIS; CELL CYCLE; CYTOLOGY; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MUTATION; PHENOTYPE; PHLOEM; PLANT; PLANT LEAF; PLANT ROOT; PRENATAL DEVELOPMENT; SEEDLING; SIGNAL TRANSDUCTION; TEMPERATURE;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; CELL CYCLE; GLUTATHIONE; MUTATION; PHENOTYPE; PHLOEM; PLANT GROWTH REGULATORS; PLANT LEAVES; PLANT ROOTS; PLANT SHOOTS; REACTIVE OXYGEN SPECIES; SEEDLING; SIGNAL TRANSDUCTION; TEMPERATURE;

EID: 79551514357     PISSN: None     EISSN: 14712229     Source Type: Journal    
DOI: 10.1186/1471-2229-11-28     Document Type: Article

References (52)

1. Last RL, Jones AD, Shachar-Hill Y. Towards the plant metabolome and beyond. Nat Rev Mol Cell Biol 2007, 8:167-174. 10.1038/nrm2098, 17213843.
2. Sawada Y, Akiyama K, Sakata A, Kuwahara A, Otsuki H, Sakurai T, Saito K, Hirai MY. Widely targeted metabolomics based on large-scale MS/MS data for elucidating metabolite accumulation patterns in plants. Plant Cell Physiol 2009, 50:37-47. 10.1093/pcp/pcn183, 2638709, 19054808.
3. Urano K, Kurihara Y, Seki M, Shinozaki K. 'Omics' analyses of regulatory networks in plant abiotic stress responses. Curr Opin Plant Biol 2010, 13:132-138. 10.1016/j.pbi.2009.12.006, 20080055.
4. Giavalisco P, Hummel J, Lisec J, Inostroza AC, Catchpole G, Willmitzer L. High-resolution direct infusion-based mass spectrometry in combination with whole 13C metabolome isotope labeling allows unambiguous assignment of chemical sum formulas. Anal Chem 2008, 80:9417-9425. 10.1021/ac8014627, 19072260.
5. Cui Q, Lewis IA, Hegeman AD, Anderson ME, Li J, Schulte CF, Westler WM, Eghbalnia HR, Sussman MR, Markley JL. Metabolite identification via the Madison Metabolomics Consortium Database. Nat Biotechnol 2008, 26:162-164. 10.1038/nbt0208-162, 18259166.
6. Meyer RC, Steinfath M, Lisec J, Becher M, Witucka-Wall H, Torjek O, Fiehn O, Eckardt A, Willmitzer L, Selbig J, Altmann T. The metabolic signature related to high plant growth rate in Arabidopsis thaliana. Proc Natl Acad Sci USA 2007, 104:4759-4764. 10.1073/pnas.0609709104, 1810331, 17360597.
7. Lisec J, Meyer RC, Steinfath M, Redestig H, Becher M, Witucka-Wall H, Fiehn O, Torjek O, Selbig J, Altmann T, Willmitzer L. Identification of metabolic and biomass QTL in Arabidopsis thaliana in a parallel analysis of RIL and IL populations. Plant J 2008, 53:960-972. 10.1111/j.1365-313X.2007.03383.x, 2268983, 18047556.
8. Hannah MA, Caldana C, Steinhauser D, Balbo I, Fernie AR, Willmitzer L. Combined transcript and metabolite profiling of Arabidopsis grown under widely variant growth conditions facilitates the identification of novel metabolite-mediated regulation of gene expression. Plant Physiol 2010, 152:2120-2129. 10.1104/pp.109.147306, 20190096.
9. Van Norman JM, Frederick RL, Sieburth LE. BYPASS1 negatively regulates a root-derived signal that controls plant architecture. Curr Biol 2004, 14:1739-1746. 10.1016/j.cub.2004.09.045, 15458645.
10. Van Norman JM, Sieburth LE. Dissecting the biosynthetic pathway for the bypass1 root-derived signal. Plant J 2007, 49:619-628. 10.1111/j.1365-313X.2006.02982.x, 17217459.
11. Kang YW, Kim RN, Cho HS, Kim WT, Choi D, Pai HS. Silencing of a BYPASS1 homolog results in root-independent pleiotrophic developmental defects in Nicotiana benthamiana. Plant Mol Biol 2008, 68:423-437. 10.1007/s11103-008-9384-7, 18716882.
12. Booker J, Sieberer T, Wright W, Williamson L, Willett B, Stirnberg P, Turnbull C, Srinivasan M, Goddard P, Leyser O. MAX1 encodes a cytochrome P450 family member that acts downstream of MAX3/4 to produce a carotenoid-derived branch-inhibiting hormone. Dev Cell 2005, 8:443-449. 10.1016/j.devcel.2005.01.009, 15737939.
13. Zou J, Zhang S, Zhang W, Li G, Chen Z, Zhai W, Zhao X, Pan X, Xie Q, Zhu L. The rice HIGH-TILLERING DWARF1 encoding an ortholog of Arabidopsis MAX3 is required for negative regulation of the outgrowth of axillary buds. Plant J 2006, 48:687-698. 10.1111/j.1365-313X.2006.02916.x, 17092317.
14. Sorefan K, Booker J, Haurogne K, Goussot M, Bainbridge K, Foo E, Chatfield S, Ward S, Beveridge C, Rameau C, Leyser O. MAX4 and RMS1 are orthologous dioxygenase-like genes that regulate shoot branching in Arabidopsis and pea. Genes Dev 2003, 17:1469-1474. 10.1101/gad.256603, 196077, 12815068.
15. Morris SE, Turnbull CG, Murfet IC, Beveridge CA. Mutational analysis of branching in pea. Evidence that Rms1 and Rms5 regulate the same novel signal. Plant Physiol 2001, 126:1205-1213. 10.1104/pp.126.3.1205, 116476, 11457970.
16. Stirnberg P, van De Sande K, Leyser HM. MAX1 and MAX2 control shoot lateral branching in Arabidopsis. Development 2002, 129:1131-1141.
17. Bennett T, Sieberer T, Willett B, Booker J, Luschnig C, Leyser O. The Arabidopsis MAX pathway controls shoot branching by regulating auxin transport. Curr Biol 2006, 16:553-563. 10.1016/j.cub.2006.01.058, 16546078.
18. Gomez-Roldan V, Fermas S, Brewer PB, Puech-Pages V, Dun EA, Pillot JP, Letisse F, Matusova R, Danoun S, Portais JC, Bouwmeester H, Bécard G, Beveridge CA, Rameau C, Rochange SF. Strigolactone inhibition of shoot branching. Nature 2008, 455:189-194. 10.1038/nature07271, 18690209.
19. Umehara M, Hanada A, Yoshida S, Akiyama K, Arite T, Takeda-Kamiya N, Magome H, Kamiya Y, Shirasu K, Yoneyama K, Kyozuka J, Yamaguchi S. Inhibition of shoot branching by new terpenoid plant hormones. Nature 2008, 455:195-200. 10.1038/nature07272, 18690207.
20. Davies W, Zhang J. Root Signals and the Regulation of Growht and Development of Plants in Drying Soil. Annual Rev Plant Physiol Plant mol Biol 1991, 42:55-76.
21. Mulholland BJ, Black CR, Taylor IB, Roberts JA, Lenton JR. Effect of soil compaction on barley (Hordeum vulgare L.) growth 1. Possible role for ABA as a root-sourced chemical signal. Journal of Experimental Botany 1996, 47:539-549.
22. Fujii H, Chiou TJ, Lin SI, Aung K, Zhu JK. A miRNA involved in phosphate-starvation response in Arabidopsis. Curr Biol 2005, 15:2038-2043. 10.1016/j.cub.2005.10.016, 16303564.
23. Bari R, Datt Pant B, Stitt M, Scheible WR. PHO2, microRNA399, and PHR1 define a phosphate-signaling pathway in plants. Plant Physiol 2006, 141:988-999. 10.1104/pp.106.079707, 1489890, 16679424.
24. Forde BG. The role of long-distance signalling in plant responses to nitrate and other nutrients. J Exp Bot 2002, 53:39-43. 10.1093/jexbot/53.366.39, 11741039.
25. Tong H, Leasure CD, Hou X, Yuen G, Briggs W, He ZH. Role of root UV-B sensing in Arabidopsis early seedling development. Proc Natl Acad Sci USA 2008, 105:21039-21044. 10.1073/pnas.0809942106, 2634920, 19075229.
26. Mikkelsen MD, Naur P, Halkier BA. Arabidopsis mutants in the C-S lyase of glucosinolate biosynthesis establish a critical role for indole-3-acetaldoxime in auxin homeostasis. Plant J 2004, 37:770-777. 10.1111/j.1365-313X.2004.02002.x, 14871316.
27. Vernoux T, Wilson RC, Seeley KA, Reichheld JP, Muroy S, Brown S, Maughan SC, Cobbett CS, Van Montagu M, Inze D, May MJ, Sung ZR. The ROOT MERISTEMLESS1/CADMIUM SENSITIVE2 gene defines a glutathione-dependent pathway involved in initiation and maintenance of cell division during postembryonic root development. Plant Cell 2000, 12:97-110. 10.1105/tpc.12.1.97, 140217, 10634910.
28. Cheng JC, Seeley KA, Sung ZR. RML1 and RML2, Arabidopsis genes required for cell proliferation at the root tip. Plant Physiol 1995, 107:365-376. 10.1104/pp.107.2.365, 157136, 7724670.
29. Bonke M, Thitamadee S, Mahonen AP, Hauser MT, Helariutta Y. APL regulates vascular tissue identity in Arabidopsis. Nature 2003, 426:181-186. 10.1038/nature02100, 14614507.
30. Benfey PN, Linstead PJ, Roberts K, Schiefelbein JW, Hauser MT, Aeschbacher RA. Root development in Arabidopsis: four mutants with dramatically altered root morphogenesis. Development 1993, 121:53-62.
31. Scheres B, DiLaurenzio L, Willemsen V, Hauser MT, Janmaat K, Weisbeek P, Benfey PN. Mutations affecting the radial organization of the Arabidopsis root display specific defects throughout the radial axis. Development 1995, 121:53-62.
32. Di Laurenzio L, Wysocka-Diller J, Malamy JE, Pysh L, Helariutta Y, Freshour G, Hahn MG, Feldmann KA, Benfey PN. The SCARECROW gene regulates an asymmetric cell division that is essential for generating the radial organization of the Arabidopsis root. Cell 1996, 86:423-433. 10.1016/S0092-8674(00)80115-4, 8756724.
33. Helariutta Y, Fukaki H, Wysocka-Diller J, Nakajima K, Jung J, Sena G, Hauser MT, Benfey PN. The SHORT-ROOT gene controls radial patterning of the Arabidopsis root through radial signaling. Cell 2000, 101:555-567. 10.1016/S0092-8674(00)80865-X, 10850497.
34. Colon-Carmona A, You R, Haimovitch-Gal T, Doerner P. Technical advance: spatio-temporal analysis of mitotic activity with a labile cyclin-GUS fusion protein. Plant J 1999, 20:503-508. 10.1046/j.1365-313x.1999.00620.x, 10607302.
35. Kang J, Dengler N. Cell cycling frequency and expression of the homeobox gene ATHB-8 during leaf vein development in Arabidopsis. Planta 2002, 216:212-219. 10.1007/s00425-002-0847-9, 12447534.
36. Beeckman T, Burssens S, Inze D. The peri-cell-cycle in Arabidopsis. J Exp Bot 2001, 52:403-411.
37. Dong X, Mindrinos M, Davis KR, Ausubel FM. Induction of Arabidopsis defense genes by virulent and avirulent Pseudomonas syringae strains and by a cloned avirulence gene. Plant Cell 1991, 3:61-72. 10.1105/tpc.3.1.61, 159979, 1824335.
38. Heath MC. Hypersensitive response-related death. Plant Mol Biol 2000, 44:321-334. 10.1023/A:1026592509060, 11199391.
39. Kovtun Y, Chiu WL, Tena G, Sheen J. Functional analysis of oxidative stress-activated mitogen-activated protein kinase cascade in plants. Proc Natl Acad Sci USA 2000, 97:2940-2945. 10.1073/pnas.97.6.2940, 16034, 10717008.
40. Manzano D, Fernandez-Busquets X, Schaller H, Gonzalez V, Boronat A, Arro M, Ferrer A. The metabolic imbalance underlying lesion formation in Arabidopsis thaliana overexpressing farnesyl diphosphate synthase (isoform 1S) leads to oxidative stress and is triggered by the developmental decline of endogenous HMGR activity. Planta 2004, 219:982-992. 10.1007/s00425-004-1301-y, 15605175.
41. Ogawa K, Kanematsu S, Asada K. Generation of superoxide anion and localization of CuZn-superoxide dismutase in the vascular tissue of spinach hypocotyls: their association with lignification. Plant Cell Physiol 1997, 38:1118-1126.
42. Whetten RW, MacKay JJ, Sederoff RR. Recent Advances in Understanding Lignin Biosynthesis. Annu Rev Plant Physiol Plant Mol Biol 1998, 49:585-609. 10.1146/annurev.arplant.49.1.585, 15012247.
43. Zhang Z, Lenk A, Andersson MX, Gjetting T, Pedersen C, Nielsen ME, Newman MA, Hou BH, Somerville SC, Thordal-Christensen H. A lesion-mimic syntaxin double mutant in Arabidopsis reveals novel complexity of pathogen defense signaling. Mol Plant 2008, 1:510-527. 10.1093/mp/ssn011, 19825557.
44. Smolen G, Bender J. Arabidopsis cytochrome P450 cyp83B1 mutations activate the tryptophan biosynthetic pathway. Genetics 2002, 160:323-332. 1461936, 11805067.
45. Nurmberg PL, Knox KA, Yun BW, Morris PC, Shafiei R, Hudson A, Loake GJ. The developmental selector AS1 is an evolutionarily conserved regulator of the plant immune response. Proc Natl Acad Sci USA 2007, 104:18795-18800. 10.1073/pnas.0705586104, 2141856, 18003921.
46. Wu P, Ma L, Hou X, Wang M, Wu Y, Liu F, Deng XW. Phosphate starvation triggers distinct alterations of genome expression in Arabidopsis roots and leaves. Plant Physiol 2003, 132:1260-1271. 10.1104/pp.103.021022, 167066, 12857808.
47. Hammond JP, Bennett MJ, Bowen HC, Broadley MR, Eastwood DC, May ST, Rahn C, Swarup R, Woolaway KE, White PJ. Changes in gene expression in Arabidopsis shoots during phosphate starvation and the potential for developing smart plants. Plant Physiol 2003, 132:578-596. 10.1104/pp.103.020941, 166999, 12805589.
48. Deyholos MK, Cavaness GF, Hall B, King E, Punwani J, Van Norman J, Sieburth LE. VARICOSE, a WD-domain protein, is required for leaf blade development. Development 2003, 130:6577-6588. 10.1242/dev.00909, 14660546.
49. Thordal-Christensen H, Zhang Z, Wei Y, Collinge DB. Subcellular localization of H2O2 in plants. H2O2 accumulation in papillae and hypersensitive response during the barley-powdery mildew interaction. Plant Journal 1997, 11:1187-1194.
50. Ahn IP, Kim S, Lee YH, Suh SC. Vitamin B1-induced priming is dependent on hydrogen peroxide and the NPR1 gene in Arabidopsis. Plant Physiol 2007, 143:838-848. 10.1104/pp.106.092627, 1803731, 17158583.
51. Hoffmann A, Hammes E, Plieth C, Desel C, Sattelmacher B, Hansen U-P. Effect of CO2 supply on formation of reactive oxygen species in Arabidopsis thaliana. Protoplasma 2005, 227:3-9. 10.1007/s00709-005-0133-3, 16389488.
52. Giraud E, Ho LH, Clifton R, Carroll A, Estavillo G, Tan YF, Howell KA, Ivanova A, Pogson BJ, Millar AH, Whelan J. The absence of ALTERNATIVE OXIDASE1a in Arabidopsis results in acute sensitivity to combined light and drought stress. Plant Physiol 2008, 147:595-610. 10.1104/pp.107.115121, 2409015, 18424626.