-
1
-
-
0008863560
-
Some factors in the interpretations of protein denaturation
-
W. Kauzmann Some factors in the interpretations of protein denaturation Advan. Protein Chem. 14 1959 1 63
-
(1959)
Advan. Protein Chem.
, vol.14
, pp. 1-63
-
-
Kauzmann, W.1
-
4
-
-
0036404919
-
On the significance of alternating patterns of polar and non-polar residues in beta-strands
-
Y. Madel-Gutfreund, and L.M. Gregoret On the significance of alternating patterns of polar and non-polar residues in beta-strands J. Mol. Biol. 323 2002 453 461
-
(2002)
J. Mol. Biol.
, vol.323
, pp. 453-461
-
-
Madel-Gutfreund, Y.1
Gregoret, L.M.2
-
5
-
-
0034598954
-
Nature disfavors sequences of alternating polar and non-polar amino acids: Implications for amyloidogenesis
-
B.M. Broome, and M.H. Hecht Nature disfavors sequences of alternating polar and non-polar amino acids: implications for amyloidogenesis J. Mol. Biol. 296 2000 961 968
-
(2000)
J. Mol. Biol.
, vol.296
, pp. 961-968
-
-
Broome, B.M.1
Hecht, M.H.2
-
6
-
-
0037402587
-
Non-intertwined binary patterns of hydrophobic/nonhydrophobic amino acids are considerably better markers of regular secondary structures than nonconstrained patterns
-
J. Hennetin, K. Le tuan, L. Canard, N. Colloc'h, J.-P. Mormon, and I. Callebaut Non-intertwined binary patterns of hydrophobic/nonhydrophobic amino acids are considerably better markers of regular secondary structures than nonconstrained patterns Proteins: Struct. Funct. Genet. 51 2003 236 244
-
(2003)
Proteins: Struct. Funct. Genet.
, vol.51
, pp. 236-244
-
-
Hennetin, J.1
Le Tuan, K.2
Canard, L.3
Colloc'H, N.4
Mormon, J.-P.5
Callebaut, I.6
-
7
-
-
33947553005
-
The structure of water and hydrophobic bonding in proteins: III. The thermodynamic properties of hydrophobic bonds in proteins
-
G. Némethy, and H.A. Scheraga The structure of water and hydrophobic bonding in proteins:III. The thermodynamic properties of hydrophobic bonds in proteins J. Phys. Chem. 66 1962 1773 1789
-
(1962)
J. Phys. Chem.
, vol.66
, pp. 1773-1789
-
-
Némethy, G.1
Scheraga, H.A.2
-
8
-
-
0014800814
-
Comparison of molecular structures of proteins: Helix content; Distribution of apolar residues
-
I.M. Klotz Comparison of molecular structures of proteins: helix content; distribution of apolar residues Arch. Biochem. Biophys. 138 1970 704 706
-
(1970)
Arch. Biochem. Biophys.
, vol.138
, pp. 704-706
-
-
Klotz, I.M.1
-
9
-
-
0015222647
-
The interpretation of protein structures: Estimation of static accessibility
-
B. Lee, and F.M. Richards The interpretation of protein structures: estimation of static accessibility J. Mol. Biol. 55 1971 379 400
-
(1971)
J. Mol. Biol.
, vol.55
, pp. 379-400
-
-
Lee, B.1
Richards, F.M.2
-
10
-
-
7944231854
-
Tertiary structure in carboxypeptidase
-
I.D. Kuntz Tertiary structure in carboxypeptidase J. Am. Chem. Soc. 120 1972 3166 3175
-
(1972)
J. Am. Chem. Soc.
, vol.120
, pp. 3166-3175
-
-
Kuntz, I.D.1
-
11
-
-
0016606973
-
Structural invariants in protein folding
-
C. Chothia Structural invariants in protein folding Nature 254 1975 304 308
-
(1975)
Nature
, vol.254
, pp. 304-308
-
-
Chothia, C.1
-
12
-
-
0018800255
-
Local interactions as a structure determinant for protein molecules:II
-
W.R. Krigbaum, and A. Komoriya Local interactions as a structure determinant for protein molecules:II Biochim. Biophys. Acta 576 1979 204 228
-
(1979)
Biochim. Biophys. Acta
, vol.576
, pp. 204-228
-
-
Krigbaum, W.R.1
Komoriya, A.2
-
13
-
-
0001469314
-
Empirical studies of hydrophobicity. 1. Effect of protein size on the hydrophobic behavior of amino acids
-
H. Meirovitch, S. Rackovsky, and H.A. Scheraga Empirical studies of hydrophobicity. 1. Effect of protein size on the hydrophobic behavior of amino acids Macromolecules 13 1980 1398 1405
-
(1980)
Macromolecules
, vol.13
, pp. 1398-1405
-
-
Meirovitch, H.1
Rackovsky, S.2
Scheraga, H.A.3
-
14
-
-
0005610602
-
Empirical studies of hydrophobicity. 2. Distribution of the hydrophobic, hydrophilic, neutral, and ambivalent amino acids in the interior and exterior layers of native proteins
-
H. Meirovitch, and H.A. Scheraga Empirical studies of hydrophobicity. 2. Distribution of the hydrophobic, hydrophilic, neutral, and ambivalent amino acids in the interior and exterior layers of native proteins Macromolecules 13 1980 1406 1414
-
(1980)
Macromolecules
, vol.13
, pp. 1406-1414
-
-
Meirovitch, H.1
Scheraga, H.A.2
-
15
-
-
0001537385
-
Empirical studies of hydrophobicity. 3. Radial distribution of clusters of hydrophobic and hydrophilic amino acids
-
H. Meirovitch, and H.A. Scheraga Empirical studies of hydrophobicity. 3. Radial distribution of clusters of hydrophobic and hydrophilic amino acids Macromolecules 14 1981 340 345
-
(1981)
Macromolecules
, vol.14
, pp. 340-345
-
-
Meirovitch, H.1
Scheraga, H.A.2
-
16
-
-
0019052221
-
Hydrophobic basis of packing in globular proteins
-
G.D. Rose, and S. Roy Hydrophobic basis of packing in globular proteins Proc. Natl Acad. Sci. USA 77 1980 4643 4647
-
(1980)
Proc. Natl Acad. Sci. USA
, vol.77
, pp. 4643-4647
-
-
Rose, G.D.1
Roy, S.2
-
17
-
-
0022423920
-
Theory for the folding and stability of globular proteins
-
K.A. Dill Theory for the folding and stability of globular proteins Biochemistry 24 1985 1501 1509
-
(1985)
Biochemistry
, vol.24
, pp. 1501-1509
-
-
Dill, K.A.1
-
18
-
-
0024750637
-
A lattice statistical mechanics model of the conformational and sequence spaces of proteins
-
K.F. Lau, and K.A. Dill A lattice statistical mechanics model of the conformational and sequence spaces of proteins Macromolecules 22 1989 3986 3997
-
(1989)
Macromolecules
, vol.22
, pp. 3986-3997
-
-
Lau, K.F.1
Dill, K.A.2
-
20
-
-
0001534260
-
Critically branched chains and percolation clusters
-
Z. Alexandrowicz Critically branched chains and percolation clusters Phys. Letters A 80 1980 284 286
-
(1980)
Phys. Letters a
, vol.80
, pp. 284-286
-
-
Alexandrowicz, Z.1
-
21
-
-
0037079582
-
Polymer collapse, protein folding, and the percolation threshold
-
H. Meirovitch Polymer collapse, protein folding, and the percolation threshold J. Comput. Chem. 23 2002 166 171
-
(2002)
J. Comput. Chem.
, vol.23
, pp. 166-171
-
-
Meirovitch, H.1
-
22
-
-
0017157584
-
A simplified representation of protein conformations for rapid simulation of protein folding
-
M. Levitt A simplified representation of protein conformations for rapid simulation of protein folding J. Mol. Biol. 104 1976 59 107
-
(1976)
J. Mol. Biol.
, vol.104
, pp. 59-107
-
-
Levitt, M.1
-
23
-
-
0025319917
-
Conformations of folded Proteins in restricted spaces
-
D.G. Covell, and R.L. Jernigan Conformations of folded Proteins in restricted spaces Biochemistry 29 1990 3287 3294
-
(1990)
Biochemistry
, vol.29
, pp. 3287-3294
-
-
Covell, D.G.1
Jernigan, R.L.2
-
24
-
-
0025343667
-
Statistical distribution of hydrophobic residues along the length of protein chains: Implications for protein folding and evolution
-
S.H. White, and R.E. Jacobs Statistical distribution of hydrophobic residues along the length of protein chains: implications for protein folding and evolution Biophys. J. 57 1990 911 921
-
(1990)
Biophys. J.
, vol.57
, pp. 911-921
-
-
White, S.H.1
Jacobs, R.E.2
-
25
-
-
0027507346
-
The evolution of proteins from random amino acid sequences. I. Evidence from the lengthwise distribution of amino acids in modern protein sequences
-
S.H. White, and R.E. Jacobs The evolution of proteins from random amino acid sequences. I. Evidence from the lengthwise distribution of amino acids in modern protein sequences J. Mol. Evol. 36 1993 79 95
-
(1993)
J. Mol. Evol.
, vol.36
, pp. 79-95
-
-
White, S.H.1
Jacobs, R.E.2
-
26
-
-
0035055990
-
Frequencies of amino acid strings in globular protein sequences indicate suppression of blocks of consecutive hydrophobic residues
-
R. Schwartz, S. Istrail, and J. King Frequencies of amino acid strings in globular protein sequences indicate suppression of blocks of consecutive hydrophobic residues Protein Sci. 10 2001 1023 1031
-
(2001)
Protein Sci.
, vol.10
, pp. 1023-1031
-
-
Schwartz, R.1
Istrail, S.2
King, J.3
-
27
-
-
0028557353
-
Nonrandomness in protein sequences: Evidence for physically driven stage of evolution
-
V.S. Pande, A.Y. Grosberg, and T. Tanaka Nonrandomness in protein sequences: evidence for physically driven stage of evolution Proc. Natl Acad. Sci. USA 91 1994 12972 12975
-
(1994)
Proc. Natl Acad. Sci. USA
, vol.91
, pp. 12972-12975
-
-
Pande, V.S.1
Grosberg, A.Y.2
Tanaka, T.3
-
29
-
-
0344888259
-
Gelation in concentrated critically branched polymer solutions
-
D. Stauffer Gelation in concentrated critically branched polymer solutions J. Chem. Soc. (London) Faraday Trans. II 72 1976 1354 1364
-
(1976)
J. Chem. Soc. (London) Faraday Trans. II
, vol.72
, pp. 1354-1364
-
-
Stauffer, D.1
-
31
-
-
0002391369
-
On a relation between percolation theory and the elasticity of gels
-
P.G. de Gennes On a relation between percolation theory and the elasticity of gels J. Phys. (Paris) Letters 37 1976 1 2
-
(1976)
J. Phys. (Paris) Letters
, vol.37
, pp. 1-2
-
-
De Gennes, P.G.1
-
33
-
-
0017926896
-
Influence of water on protein structure. An analysis of the preference of amino acid residues for the inside or outside and for specific conformations in a protein molecule
-
D.H. Wertz, and H.A. Scheraga Influence of water on protein structure. An analysis of the preference of amino acid residues for the inside or outside and for specific conformations in a protein molecule Macromolecules 11 1978 9 15
-
(1978)
Macromolecules
, vol.11
, pp. 9-15
-
-
Wertz, D.H.1
Scheraga, H.A.2
-
34
-
-
0018077908
-
Hydrophobic character of amino acid residues in globular proteins
-
P. Manavalan, and P.K. Ponnuswamy Hydrophobic character of amino acid residues in globular proteins Nature (London) 275 1978 673 674
-
(1978)
Nature (London)
, vol.275
, pp. 673-674
-
-
Manavalan, P.1
Ponnuswamy, P.K.2
-
35
-
-
0022596727
-
Solvation energy in protein folding and binding
-
D. Eisenberg, and A.D. McLachlan Solvation energy in protein folding and binding Nature 319 1986 199 203
-
(1986)
Nature
, vol.319
, pp. 199-203
-
-
Eisenberg, D.1
McLachlan, A.D.2
-
36
-
-
0017187836
-
The nature of the accessible and buried surfaces in proteins
-
C.J. Chothia The nature of the accessible and buried surfaces in proteins J. Mol. Biol. 105 1976 1 12
-
(1976)
J. Mol. Biol.
, vol.105
, pp. 1-12
-
-
Chothia, C.J.1
-
37
-
-
0022412192
-
-
G.D. Rose, A.R. Geselowitz, G.J. Lesser, R.H. Lee, and M.H. Zehfus Science 229 1985 834 838
-
(1985)
Science
, vol.229
, pp. 834-838
-
-
Rose, G.D.1
Geselowitz, A.R.2
Lesser, G.J.3
Lee, R.H.4
Zehfus, M.H.5
-
38
-
-
0020475449
-
A simple method for displaying the hydropathic character of a protein
-
J. Kyte, and R.F. Doolittle A simple method for displaying the hydropathic character of a protein J. Mol. Biol. 157 1982 105 132
-
(1982)
J. Mol. Biol.
, vol.157
, pp. 105-132
-
-
Kyte, J.1
Doolittle, R.F.2
-
39
-
-
0018784438
-
Surface and inside volumes in globular proteins
-
J. Janin Surface and inside volumes in globular proteins Nature 277 1979 491 492
-
(1979)
Nature
, vol.277
, pp. 491-492
-
-
Janin, J.1
-
41
-
-
0036893044
-
Stability scales and atomic solvation parameters extracted from 1023 mutations experiments
-
H. Zhou, and Y. Zhou Stability scales and atomic solvation parameters extracted from 1023 mutations experiments Proteins: Struct. Funct. Genet. 49 2002 483 492
-
(2002)
Proteins: Struct. Funct. Genet.
, vol.49
, pp. 483-492
-
-
Zhou, H.1
Zhou, Y.2
-
42
-
-
0026076664
-
Extracting hydrophobic free energies from experimental data: Relationship to protein folding and theoretical models
-
K.A. Sharp, A. Nicholls, R. Friedmann, and B. Honig Extracting hydrophobic free energies from experimental data: relationship to protein folding and theoretical models Biochemistry 30 1991 9686 9697
-
(1991)
Biochemistry
, vol.30
, pp. 9686-9697
-
-
Sharp, K.A.1
Nicholls, A.2
Friedmann, R.3
Honig, B.4
-
43
-
-
0000484499
-
Hydrophobic parameters p of amino-acid side chains from the partitioning of N-acetyl-amino-acid amides Eur
-
J.-L. Fauchere, and V. Pliska Hydrophobic parameters p of amino-acid side chains from the partitioning of N-acetyl-amino-acid amides Eur J. Med. Chem. (Chim. Ther.) 18 1983 369 375
-
(1983)
J. Med. Chem. (Chim. Ther.)
, vol.18
, pp. 369-375
-
-
Fauchere, J.-L.1
Pliska, V.2
-
44
-
-
0015217634
-
The solubility of amino acids and two glycine peptides in aqueous ethanol and dioxane solutions. Establishment of a hydrophobicity scale
-
Y. Nozaki, and C.J. Tanford The solubility of amino acids and two glycine peptides in aqueous ethanol and dioxane solutions. Establishment of a hydrophobicity scale J. Biol. Chem. 246 1971 2211 2217
-
(1971)
J. Biol. Chem.
, vol.246
, pp. 2211-2217
-
-
Nozaki, Y.1
Tanford, C.J.2
-
46
-
-
0028149160
-
Exploring conformational space with a simple lattice model for protein structure
-
D.A. Hinds, and M. Levitt Exploring conformational space with a simple lattice model for protein structure J. Mol. Biol. 243 1994 668 682
-
(1994)
J. Mol. Biol.
, vol.243
, pp. 668-682
-
-
Hinds, D.A.1
Levitt, M.2
-
47
-
-
0034901412
-
Are proteins well-packed
-
J. Liang, and K.A. Dill Are proteins well-packed Biophys. J. 81 2001 751 766
-
(2001)
Biophys. J.
, vol.81
, pp. 751-766
-
-
Liang, J.1
Dill, K.A.2
-
48
-
-
0026506348
-
Simulations of the folding pathway of triose phosphate isomerase-type α/β barrel proteins
-
A. Godzik, J. Skolnick, and A. Kolinski Simulations of the folding pathway of triose phosphate isomerase-type α/β barrel proteins Proc. Natl Acad. Sci. USA 89 1992 2629 2633
-
(1992)
Proc. Natl Acad. Sci. USA
, vol.89
, pp. 2629-2633
-
-
Godzik, A.1
Skolnick, J.2
Kolinski, A.3
-
49
-
-
0000767638
-
A reduced model of short range interactions in polypeptide chains
-
A. Kolinski, M. Milik, J. Rycombel, and J. Skolnick A reduced model of short range interactions in polypeptide chains J. Chem. Phys. 103 1995 4312 4323
-
(1995)
J. Chem. Phys.
, vol.103
, pp. 4312-4323
-
-
Kolinski, A.1
Milik, M.2
Rycombel, J.3
Skolnick, J.4
-
50
-
-
18244364614
-
Long-range interactions within a nonnative protein
-
J. Klein-Seetharaman, M. Oikawa, S.B. Grimshaw, J. Wirmer, E. Duchardt, and T. Ueda Long-range interactions within a nonnative protein Science 295 2002 1719 1722
-
(2002)
Science
, vol.295
, pp. 1719-1722
-
-
Klein-Seetharaman, J.1
Oikawa, M.2
Grimshaw, S.B.3
Wirmer, J.4
Duchardt, E.5
Ueda, T.6
-
51
-
-
0032993447
-
Polymer principles and protein folding
-
K.A. Dill Polymer principles and protein folding Protein Sci. 8 1999 1166 1180
-
(1999)
Protein Sci.
, vol.8
, pp. 1166-1180
-
-
Dill, K.A.1
-
52
-
-
0031745665
-
Protein design: A perspective from simple tractable models
-
E.I. Shakhnovich Protein design: a perspective from simple tractable models Fold. Des. 3 1998 R45 R58
-
(1998)
Fold. Des.
, vol.3
-
-
Shakhnovich, E.I.1
|