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Volumn 168, Issue 5, 2011, Pages 466-473

The rbcL gene of Populus deltoides has multiple transcripts and is redox-regulated in vitro

Author keywords

5 Untranslated region; Populus deltoides; RbcL; Redox regulation; RNA binding proteins

Indexed keywords

MESSENGER RNA; PRIMER DNA; RBCL PROTEIN, PLASTID; RIBULOSEBISPHOSPHATE CARBOXYLASE;

EID: 79251600176     PISSN: 01761617     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jplph.2010.08.001     Document Type: Article
Times cited : (2)

References (32)
  • 1
    • 0034962167 scopus 로고    scopus 로고
    • Specific sequence elements in the 50 untranslated regions of rbcL and atpB gene mRNAs stabilize transcripts in the chloroplast of Chlamydomonas reinhardtii
    • Anthonisen I.L., Salvador M.L., Klein U. Specific sequence elements in the 50 untranslated regions of rbcL and atpB gene mRNAs stabilize transcripts in the chloroplast of Chlamydomonas reinhardtii. RNA 2001, 7:1024-1033.
    • (2001) RNA , vol.7 , pp. 1024-1033
    • Anthonisen, I.L.1    Salvador, M.L.2    Klein, U.3
  • 2
    • 0037054542 scopus 로고    scopus 로고
    • Characterization of Tbc2, a nucleus-encoded factor specifically required for translation of the chloroplast psbC mRNA in Chlamydomonas reinhardtii
    • Auchincloss A.H., Zerges W., Perron K., Girard-Bascou J., Rochaix J.D. Characterization of Tbc2, a nucleus-encoded factor specifically required for translation of the chloroplast psbC mRNA in Chlamydomonas reinhardtii. J Cell Biol 2002, 157:953-962.
    • (2002) J Cell Biol , vol.157 , pp. 953-962
    • Auchincloss, A.H.1    Zerges, W.2    Perron, K.3    Girard-Bascou, J.4    Rochaix, J.D.5
  • 3
    • 0028930788 scopus 로고
    • An AU-rich element in the 3′ untranslated region of the spinach chloroplast petD gene participates in sequence-specific RNA-protein complex formation
    • Chen Q., Adams C.C., Usack L., Yang J., Monde R.A., Stern D.B. An AU-rich element in the 3′ untranslated region of the spinach chloroplast petD gene participates in sequence-specific RNA-protein complex formation. Mol Cell Biol 1995, 15:2010-2018.
    • (1995) Mol Cell Biol , vol.15 , pp. 2010-2018
    • Chen, Q.1    Adams, C.C.2    Usack, L.3    Yang, J.4    Monde, R.A.5    Stern, D.B.6
  • 4
    • 0028587976 scopus 로고
    • Light-regulated translation of chloroplast messenger RNAs through redox potential
    • Danon A., Mayfield S.P. Light-regulated translation of chloroplast messenger RNAs through redox potential. Science 1994, 266:1717-1719.
    • (1994) Science , vol.266 , pp. 1717-1719
    • Danon, A.1    Mayfield, S.P.2
  • 5
    • 77953393143 scopus 로고    scopus 로고
    • Post-transcriptional control of chloroplast gene expression
    • del Campo E.M. Post-transcriptional control of chloroplast gene expression. Gene Reg Sys Biol 2009, 3:31-47.
    • (2009) Gene Reg Sys Biol , vol.3 , pp. 31-47
    • del Campo, E.M.1
  • 6
    • 0033199033 scopus 로고    scopus 로고
    • 5′ to 3′ exoribonucleolytic activity is a normal component of chloroplast mRNA decay pathways
    • Drager R.G., Higgs D.C., Kindle K.L., Stern D.B. 5′ to 3′ exoribonucleolytic activity is a normal component of chloroplast mRNA decay pathways. Plant J 1999, 19:521-532.
    • (1999) Plant J , vol.19 , pp. 521-532
    • Drager, R.G.1    Higgs, D.C.2    Kindle, K.L.3    Stern, D.B.4
  • 7
    • 0022603813 scopus 로고
    • Chloroplast gene expression and promoter identification in chloroplast extracts
    • Gruissem W., Greenberg B.M., Zurawski G., Hallick R.B. Chloroplast gene expression and promoter identification in chloroplast extracts. Methods Enzymol 1986, 118:253-270.
    • (1986) Methods Enzymol , vol.118 , pp. 253-270
    • Gruissem, W.1    Greenberg, B.M.2    Zurawski, G.3    Hallick, R.B.4
  • 8
    • 0031011722 scopus 로고    scopus 로고
    • The two RNA polymerases encoded by the nuclear and the plastid compartments transcribe distinct groups of genes in tobacco plastids
    • Hajdukiewicz P.T.J., Allison L.A., Maliga P. The two RNA polymerases encoded by the nuclear and the plastid compartments transcribe distinct groups of genes in tobacco plastids. EMBO J 1997, 16:4041-4048.
    • (1997) EMBO J , vol.16 , pp. 4041-4048
    • Hajdukiewicz, P.T.J.1    Allison, L.A.2    Maliga, P.3
  • 9
    • 0347519277 scopus 로고    scopus 로고
    • Molecular genetic analysis of chloroplast gene promoters dependent on SIG2, a nucleus-encoded sigma factor for the plastid-encoded RNA polymerase in Arabidopsis thaliana
    • Hanaoka M., Kanamaru K., Takahashi H., Tanaka K. Molecular genetic analysis of chloroplast gene promoters dependent on SIG2, a nucleus-encoded sigma factor for the plastid-encoded RNA polymerase in Arabidopsis thaliana. Nucleic Acids Res 2003, 31:7090-7098.
    • (2003) Nucleic Acids Res , vol.31 , pp. 7090-7098
    • Hanaoka, M.1    Kanamaru, K.2    Takahashi, H.3    Tanaka, K.4
  • 10
    • 1042291444 scopus 로고    scopus 로고
    • Functional Shine-Dalgarno-like sequences for translational initiation of chloroplast mRNAs
    • Hirose T., Sugiura M. Functional Shine-Dalgarno-like sequences for translational initiation of chloroplast mRNAs. Plant Cell Physiol 2004, 45:114-117.
    • (2004) Plant Cell Physiol , vol.45 , pp. 114-117
    • Hirose, T.1    Sugiura, M.2
  • 11
    • 0031452439 scopus 로고    scopus 로고
    • Protein disulfide isomerase as a regulator of chloroplast translational activation
    • Kim J., Mayfield S.P. Protein disulfide isomerase as a regulator of chloroplast translational activation. Science 1997, 278:1954-1957.
    • (1997) Science , vol.278 , pp. 1954-1957
    • Kim, J.1    Mayfield, S.P.2
  • 14
    • 0034682733 scopus 로고    scopus 로고
    • Stabilization of circular rpsT mRNA demonstrates the 59-end dependence of RNase E action in vivo
    • Mackie G.A. Stabilization of circular rpsT mRNA demonstrates the 59-end dependence of RNase E action in vivo. J Biol Chem 2000, 275:25069-25072.
    • (2000) J Biol Chem , vol.275 , pp. 25069-25072
    • Mackie, G.A.1
  • 15
    • 0033591465 scopus 로고    scopus 로고
    • Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
    • Mathews D.H., Sabina J., Zuker M., Turner D.H. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J Mol Biol 1999, 288:911-940.
    • (1999) J Mol Biol , vol.288 , pp. 911-940
    • Mathews, D.H.1    Sabina, J.2    Zuker, M.3    Turner, D.H.4
  • 16
    • 0035793628 scopus 로고    scopus 로고
    • Light-associated and processing-dependent protein binding to 5′ regions of rbcL mRNA in the chloroplasts of a C4 plant
    • McCormac D.J., Litz H., Wang J., Gollnick P.D., Berry J.O. Light-associated and processing-dependent protein binding to 5′ regions of rbcL mRNA in the chloroplasts of a C4 plant. J Biol Chem 2001, 276:3476-3483.
    • (2001) J Biol Chem , vol.276 , pp. 3476-3483
    • McCormac, D.J.1    Litz, H.2    Wang, J.3    Gollnick, P.D.4    Berry, J.O.5
  • 17
    • 0033135557 scopus 로고    scopus 로고
    • The stromal protein large subunit of ribulose-1,5-bisphosphate carboxylase is translated on membrane-bound ribosomes
    • Muhlbauer S.K., Eichacker L.A. The stromal protein large subunit of ribulose-1,5-bisphosphate carboxylase is translated on membrane-bound ribosomes. Eur J Biochem 1999, 261:784-788.
    • (1999) Eur J Biochem , vol.261 , pp. 784-788
    • Muhlbauer, S.K.1    Eichacker, L.A.2
  • 18
    • 51249177648 scopus 로고
    • Multiple transcripts for higher plant rbcL and atpB genes and localization of the transcription initiation site of the rbcL gene
    • Mullet J.E., Orozco E.M., Chua N.M. Multiple transcripts for higher plant rbcL and atpB genes and localization of the transcription initiation site of the rbcL gene. Plant Mol Biol 1985, 4:39-54.
    • (1985) Plant Mol Biol , vol.4 , pp. 39-54
    • Mullet, J.E.1    Orozco, E.M.2    Chua, N.M.3
  • 19
    • 0035808422 scopus 로고    scopus 로고
    • Chloroplast ribonucleoproteins function as a stabilizing factor of ribosome-free mRNAs in the stroma
    • Nakamura T., Ohta M., Sugiura M., Sugita M. Chloroplast ribonucleoproteins function as a stabilizing factor of ribosome-free mRNAs in the stroma. J Biol Chem 2001, 276:147-152.
    • (2001) J Biol Chem , vol.276 , pp. 147-152
    • Nakamura, T.1    Ohta, M.2    Sugiura, M.3    Sugita, M.4
  • 20
    • 0017613512 scopus 로고
    • A simplification of the protein assay method of Lowry et al., which is more generally applicable
    • Peterson G.L. A simplification of the protein assay method of Lowry et al., which is more generally applicable. Anal Biochem 1977, 83:346-356.
    • (1977) Anal Biochem , vol.83 , pp. 346-356
    • Peterson, G.L.1
  • 21
    • 0037267882 scopus 로고    scopus 로고
    • Chloroplast redox signals: how photosynthesis controls its own genes
    • Pfannschmidt T. Chloroplast redox signals: how photosynthesis controls its own genes. Trends Plant Sci 2003, 8:33-41.
    • (2003) Trends Plant Sci , vol.8 , pp. 33-41
    • Pfannschmidt, T.1
  • 22
    • 0027538631 scopus 로고
    • A methyl jasmonate-induced shift in the length of the 5′ untranslated region impairs translation of the plastid rbcL transcripts in barley
    • Reinbothe S., Reinbothe C., Heintzen C., Seidenbecher C., Parthier B. A methyl jasmonate-induced shift in the length of the 5′ untranslated region impairs translation of the plastid rbcL transcripts in barley. EMBO J 1993, 12:1505-1512.
    • (1993) EMBO J , vol.12 , pp. 1505-1512
    • Reinbothe, S.1    Reinbothe, C.2    Heintzen, C.3    Seidenbecher, C.4    Parthier, B.5
  • 23
    • 0033396787 scopus 로고    scopus 로고
    • The redox state regulates RNA degradation in the chloroplast of Chlamydomonas reinhardtii
    • Salvador M.L., Klein U. The redox state regulates RNA degradation in the chloroplast of Chlamydomonas reinhardtii. Plant Physiol 1999, 121:1367-1374.
    • (1999) Plant Physiol , vol.121 , pp. 1367-1374
    • Salvador, M.L.1    Klein, U.2
  • 24
    • 1542710228 scopus 로고    scopus 로고
    • Changes in the 5′-untranslated region of the rbcL gene accelerates transcript degradation more than 50-fold in the chloroplast of Chlamydomonas reinhardtii
    • Salvador M.L., Suay L., Anthonisen I.L., Klein U. Changes in the 5′-untranslated region of the rbcL gene accelerates transcript degradation more than 50-fold in the chloroplast of Chlamydomonas reinhardtii. Curr Genet 2004, 45:176-182.
    • (2004) Curr Genet , vol.45 , pp. 176-182
    • Salvador, M.L.1    Suay, L.2    Anthonisen, I.L.3    Klein, U.4
  • 25
    • 0031128133 scopus 로고    scopus 로고
    • Differential regulation of chloroplast gene expression in Chlamydomonas reinhardtii during photoacclimation: light stress transiently suppresses synthesis of the Rubisco LSU protein while enhancing synthesis of the PS II D1 protein
    • Shapira M., Lers A., Heifetz P., Irihimoritch V., Osmond B.C., Gillham N.W., et al. Differential regulation of chloroplast gene expression in Chlamydomonas reinhardtii during photoacclimation: light stress transiently suppresses synthesis of the Rubisco LSU protein while enhancing synthesis of the PS II D1 protein. Plant Mol Biol 1997, 33:1001-1011.
    • (1997) Plant Mol Biol , vol.33 , pp. 1001-1011
    • Shapira, M.1    Lers, A.2    Heifetz, P.3    Irihimoritch, V.4    Osmond, B.C.5    Gillham, N.W.6
  • 26
    • 0034755289 scopus 로고    scopus 로고
    • RNA-binding proteins interact specifically with the Arabidopsis chloroplast psbA mRNA 5′ untranslated region in a redox-dependent manner
    • Shen Y., Danon A., Christopher D.A. RNA-binding proteins interact specifically with the Arabidopsis chloroplast psbA mRNA 5′ untranslated region in a redox-dependent manner. Plant Cell Physiol 2001, 42:1071-1078.
    • (2001) Plant Cell Physiol , vol.42 , pp. 1071-1078
    • Shen, Y.1    Danon, A.2    Christopher, D.A.3
  • 27
    • 0020403028 scopus 로고
    • The nucleotide sequence of the tobacco chloroplast gene for the large subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase
    • Shinozaki K., Sugiura M. The nucleotide sequence of the tobacco chloroplast gene for the large subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase. Gene 1982, 20:91-102.
    • (1982) Gene , vol.20 , pp. 91-102
    • Shinozaki, K.1    Sugiura, M.2
  • 28
    • 3543050696 scopus 로고    scopus 로고
    • Components involved in RNA-protein interaction at the 3′ untranslated region of the rbcL mRNA of Populus deltoides
    • Srivastava S., Trivedi P.K., Nath P. Components involved in RNA-protein interaction at the 3′ untranslated region of the rbcL mRNA of Populus deltoides. Plant Sci 2004, 167:765-772.
    • (2004) Plant Sci , vol.167 , pp. 765-772
    • Srivastava, S.1    Trivedi, P.K.2    Nath, P.3
  • 30
    • 24044495582 scopus 로고    scopus 로고
    • Specific roles of 5′ RNA secondary structures in stabilizing transcripts in chloroplasts
    • Suay L., Salvador M.L., Abesha E., Klein U. Specific roles of 5′ RNA secondary structures in stabilizing transcripts in chloroplasts. Nucleic Acids Res 2005, 3:4754-4761.
    • (2005) Nucleic Acids Res , vol.3 , pp. 4754-4761
    • Suay, L.1    Salvador, M.L.2    Abesha, E.3    Klein, U.4
  • 31
    • 33847273637 scopus 로고    scopus 로고
    • Distinct roles for the 5′ and 3′ untranslated regions in the degradation and accumulation of chloroplast tufA mRNA: identification of an early intermediate in the in vivo degradation pathway
    • Zicker A.A., Kadakia C.S., Herrin D.L. Distinct roles for the 5′ and 3′ untranslated regions in the degradation and accumulation of chloroplast tufA mRNA: identification of an early intermediate in the in vivo degradation pathway. Plant Mol Biol 2007, 63:689-902.
    • (2007) Plant Mol Biol , vol.63 , pp. 689-902
    • Zicker, A.A.1    Kadakia, C.S.2    Herrin, D.L.3
  • 32
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 2003, 31:3406-3415.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3406-3415
    • Zuker, M.1


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