Overshooting dynamics in a model adaptive radiation

Proceedings of the Royal Society B: Biological Sciences

Volumn 278, Issue 1704, 2011, Pages 392-398

  Meyer, Justin R ^a   Schoustra, Sijmen E ^b   Lachapelle, Josianne ^b   Kassen, Rees ^b  

^a MICHIGAN STATE UNIVERSITY   (United States)

^b UNIVERSITY OF OTTAWA   (Canada)

Author keywords

Adaptation; Adaptive radiation; Divergent selection; Diversity; Niche specialization; Pseudomonas fluorescens

Indexed keywords

ADAPTIVE RADIATION; BACTERIUM; BIOFILM; CLIMATE CHANGE; DIVERGENCE; ECOLOGICAL MODELING; LIFE HISTORY TRAIT; MORPHOTYPE; NICHE; SPECIALIST; SPECIALIZATION; SPECIES DIVERSITY;

BACTERIA (MICROORGANISMS); PSEUDOMONAS FLUORESCENS;

EID: 79251532093     PISSN: 09628452     EISSN: 14712970     Source Type: Journal    
DOI: 10.1098/rspb.2010.0640     Document Type: Conference Paper

References (32)

1. Simpson, G. G. 1953 The major features of evolution. New York, NY: Columbia University Press.
2. Gould, S. J. 1989 Wonderful life: the burgess shale and the nature of history. London, UK: Penguin.
3. Benton, M. J. 1996 Diversification and extinction in the history of life. Science 268, 52-58. (doi:10.1126/science. 7701342)
4. Hedges, S. B., Parker, P. H., Sibley, C. G. & Kumar, S. 1996 Continental breakup and the ordinal diversification of birds and mammals. Nature 381, 226-229. (doi:10. 1038/381226a0)
5. Gould, S. J. 1987 Time's arrow, time's cycle: myth and metaphor in the discovery of geological time. Cambridge, MA: Harvard University Press.
6. Nee, S. 2006 Birth-death models in macroevolution. Ann. Rev. Ecol. Evol. Syst. 37, 1-17. (doi:10.1146/ annurev.ecolsys.37.091305.110035)
7. Rosenzweig, M. L. 1995 Species diversity in space and time. Cambridge, UK: Cambridge University Press.
8. Foote, M., Crampton, J. S., Beu, A. G., Marshall, B. A., Cooper, R. A., Maxwell, P. A. & Matcham, I. 2007 Rise and fall of species occupancy in Cenozoic fossil mollusks. Science 318, 1131-1134. (doi:10.1126/science.1146303)
9. Foote, M. 2007 Symmetric waxing and waning of marine invertebrate genera. Paleobiology 33, 517-529. (doi:10. 1666/06084.1)
10. Gillespie, R. G. 2004 Community assembly through adaptive radiation in Hawaiian spiders. Science 303, 356-359. (doi:10.1126/science.1091875)
11. Kassen, R., Llewellyn, M. & Rainey, P. B. 2004 Ecological constraints on diversification in a model adaptive radiation. Nature 431, 984-988. (doi:10.1038/ nature02923)
12. Seehausen, O. 2006 African cichlid fish: a model system in adaptive radiation research. Proc. R. Soc. B 273, 1987-1998. (doi:10.1098/rspb.2006.3539)
13. Gavrilets, S. & Vose, A. 2005 Dynamic patterns of adaptive radiation. Proc. Natl Acad. Sci. USA 102, 18 040-18 045. (doi:10.1073/pnas.0506330102)
14. Kassen, R. 2009 Towards a general theory of adaptive radiation: insights from microbial experimental evolution. Ann. NY Acad. Sci. 1168, 3-22. (doi:10.1111/j. 1749-6632.2009.04574.x)
15. Meyer, J. R. & Kassen, R. 2007 The effects of competition and predation on diversification in a model adaptive radiation. Nature 446, 432-435. (doi:10.1038/ nature05599)
16. Schluter, D. 2000 The ecology of adaptive radiation. Oxford, UK: Oxford University Press.
17. Foote, M. 1993 Discordance and concordance between morphological and taxonomic diversity. Paleobiology 19, 185-204.
18. Rainey, P. B. & Travisano, M. 1998 Adaptive radiation in a heterogeneous environment. Nature 394, 69-72. (doi:10.1038/27900)
19. Goymer, P., Kahn, S. G., Malone, J. B., Gehrig, S. M., Spiers, A. J. & Rainey, P. B. 2006 Adaptive divergence in experimental populations of Pseudomonas fluorescens. II. Role of the GGDEF regulator WspR in evolution and development of the wrinkly spreader phenotype. Genetics 173, 515-526. (doi:10.1534/genetics.106. 055863)
20. Bantinaki, E., Kassen, R., Knight, C. G., Robinson, Z., Spiers, A. J. & Rainey, P. B. 2007 Adaptive divergence in experimental populations of Pseudomonas fluorescens. III. Mutational origins of wrinkly spreader diversity. Genetics 176, 441-453. (doi:10.1534/genetics.106. 069906)
21. Zhang, X. X. & Rainey, P. B. 2007 Construction and validation of a neutrally-marked strain of Pseudomonas fluorescens SBW25. J. Micro. Methods 71, 78-91. (doi:10.1016/j.mimet.2007.07.001)
22. MacLean, C. R., Bell, G. & Rainey, P. B. 2004 The evolution of a pleitropic fitness tradeoff in Pseudomonas fluorescens. Proc. Natl Acad. Sci. USA 101, 8072-8077. (doi:10.1073/pnas.0307195101)
23. Brockhurst, M. A., Hochberg, M. E., Bell, T. & Buckling, A. 2006 Character displacement promotes cooperation in bacterial biofilms. Curr. Biol. 16, 2030-2034. (doi:10.1016/j.cub.2006.08.068)
24. Reboud, X. & Bell, G. 1997 Experimental evolution in Chlamydomonas. III. Evolution of specialist and generalist types in environments that vary in space and time. Heredity 78, 507-514. (doi:10.1038/hdy.1997.79)
25. R Development Core Team 2008 R: a language and environment for statistical computing. R version 2.8.1. Vienna, Austria: R Foundation for Statistical Computing.
26. Sambrook, J. & Russell, D. 2001 Molecular cloning: a laboratory manual, 3rd ed. New York, NY: Cold Spring Harbor Laboratory Press.
27. Lenski, R. E., Rose, M. R., Simpson, S. C. & Tadler, S. C. 1991 Long-term experimental evolution in Escherichia coli. I. Adaptation and divergence during 2000 generations. Am. Nat. 138, 1315-1341. (doi:10.1086/285289)
28. Brockhurst, M. A., Colegrave, N., Hogson, D. J. & Buckling, A. 2007 Niche occupation limits adaptive radiation in experimental microcosms. PLoS ONE 2, e193. (doi:10.1371/journal.pone.0000193)
29. Gavrilets, S. & Losos, J. B. 2009 Adaptive radiation: contrasting theory with data. Science 323, 732-737. (doi:10. 1126/science.1157966)
30. Gillespie, R. G. & Baldwin, B. G. 2009 Island biogeography of remote archipelagoes: interplay between ecological and evolutionary processes. In The theory of island biogeography revisited (eds J. B. Losos & R. E. Ricklefs), pp. 358-387. Princeton, NJ: Princeton University Press.
31. Fukami, T., Beaumont, H. J., Zhang, X. X. & Rainey, P. B. 2007 Immigration history controls diversification in experimental adaptive radiation. Nature 446, 436-439. (doi:10.1038/nature05629)
32. Finkel, S. A. 2006 Long-term survival during stationary phase: evolution and the GASP phenotype. Nat. Rev. Microbiol. 4, 113-120. (doi:10.1038/ nrmicro1340)