Phylogenetic analysis of endophytic ensifer adhaerens isolated from rice roots

Chinese Journal of Applied and Environmental Biology

Volumn 16, Issue 6, 2010, Pages 779-783

  Zhang, Xiaoxia ^a   Qiu, Fubin ^c   Sun, Lei ^d   Ma, Xiaotong ^a   Jiang, Ruibo ^a   Song, Wei ^b  

^a INSTITUTE OF PLANT PROTECTION   (China)

^b CAPITAL NORMAL UNIVERSITY   (China)

^c SHANXI MEDICAL UNIVERSITY   (China)

^d HEBEI UNIVERSITY   (China)

Author keywords

Endophytic bacterium from rice; Ensifer adhaerens; Nodulation test; Phylogenetic analysis

Indexed keywords

BACTERIA (MICROORGANISMS); ENSIFER; ENSIFER ADHAERENS; GLYCINE MAX; MEDICAGO SATIVA; ORYZA SATIVA; PHASEOLUS VULGARIS; SINORHIZOBIUM; TRIFOLIUM; TRIFOLIUM REPENS;

EID: 79251518073     PISSN: 1006687X     EISSN: None     Source Type: Journal    
DOI: 10.3724/SP.J.1145.2010.00779     Document Type: Article

References (22)

1. Jr Casida LE. Ensifer adhaerens gen. nov., sp. nov.: A bacterial predator of bacteria in soil. Int J Syst Bacteriol, 1982, 32(3): 339-345
2. Willems A, Fernandez-Lopez M, Munoz-Adelantado E, Goris J, De Vos P, Martinez-Romero E, Toro N and Gillis M. Description of new Ensifer strains from nodules and proposal to transfer Ensifer adhaerens Casida 1982 to Sinorhizobium as Sinorhizobium adhaerens comb. nov. Request for an Opinion. Int J Syst Evol Microbiol, 2003, 53: 1207-1217
3. Martens M, Dawyndt P, Coopman R, Gillis M, De Vos P, Willems A. Advantages of multilocus sequence analysis for taxonomie studies: A case study using 10 housekeeping genes in the genus Ensifer (including former Sinorhizobium). Int J Syst Evol Microbiol, 2008, 58: 200-214
4. Lapage SP, Sneath PHA, Lessel EF, Skerman VBD, Seeliger HPR, Clark WA. International Code of Nomenclature of Bacteria. American Society of Microbiology, Washington, USA, 1990
5. Young JM, Kuykendall LD, Martinez-Romero E, Kerr A, Sawada H. Classification and nomenclature of Agrobacterium and Rhizobium - A reply to Farrand etal. Int J Syst Evol Microbiol, 2003, 53: 1689-1695 (Pubitemid 37185009)
6. Judicial Commission of the International Committee on Systematics of Prokaryotes. The genus name Sinorhizobium Chen et al. 1988 is a later synonym of Ensifer Casida 1982 and is not conserved over the latter genus name, and the species name 'Sinorhizobium adhaerens' is not validly published. Opinion 84. Int J Syst Evol Microbiol, 2008, 58: 1973
7. Lindström K, Young JPW. International Committee on Systematics of Prokaryotes Subcommittee on the taxonomy of Agrobacterium and Rhizobium. Int J Syst Evol Microbiol, 2009, 59: 921-922
8. Zhang XX, Sun L, Qiu FB, Jiang RB, Song W. Rheinheimera tangshanensis sp. nov., a novel rice root-associated bacterium. Int J Syst Evol Microbiol, 2008, 58: 2420-2424
9. Lane DJ. 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics. Stackebrandt E, Goodfellow M eds. Chichester, UK: Wiley, 1991
10. Gaunt MW, Turner SL, Rigottier-Gois L, Young JPW. Phylogenies of atpD and recA support the small subunit rRNA-based classification of rhizobia. Int J Syst Evol Microbiol, 2001, 51: 2037-2048
11. Chen WX, Yan GH, Li JL. Numerical taxonomic study of fast-growing soybean rhizobia and a proposal that Rhizobium fredii be assigned to Sinorhizobium gen. nov. Int J Syst Bacteriol, 1988, 38: 392-397
12. Stackebrandt E, Goebel BM. Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol, 1994, 44: 846-849
13. Fox GE, Wisotzkey JD, Jr Jurtshuk P. How close is close: 16S ribosomal RNA sequence identity may not be sufficient to guarantee species identity. Int J Syst Bacteriol, 1992 ,42: 166-170
14. Stackebrandt E, Frederiksen W, Garrity GM, Grimont PD, Kämpfer P, Maiden MCJ, Nesme X, Rosselló-Mora R, Swings J, Trüper HG, Vauterin L, Ward AC, Whitman WB. Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology. Int J Syst Bacteriol, 2002, 52: 1043-1047
15. Zeigler DR. Gene sequences useful for predicting relatedness of whole genomes in bacteria. Int J Syst Evol Microbiol, 2003, 53: 1893-1900
16. Gevers D, Cohan FM, Lawrence JG, Spratt BG, Coenye T, Feil EJ, Stackebrandt E, Van de Peer Y, Vandamme P, other authors. Reevaluating prokaryotic species. Nat Rev Microbiol, 2005, 3: 733-739
17. Rogel MA, Hernández-Lucas I, Kuykendall LD, Balkwill DL, MartinezRomero E. Nitrogen-fixing nodules with Ensifer adhaerens harboring Rhizobium tropici symbiotic plasmids. Appl Enviro Microbiol, 2001, 67 (7): 3264-3268
18. Fröhlich J, Koustiane C, Kämpfer P, Rosselló-Mora R, Valens M, Berchtold M, Kuhnigk T, Hertel H, Maheshwari DK, König H. Occurrence of rhizobia in the gut of the higher termite Nasutitermes nigrieeps. Syst Appl Microbiol, 2007, 30: 68-74 (Pubitemid 44969480)
19. Song KQ, Jiang BH, Jiang L, Wen XQ, Lin Y. Isolation and biological characterization of phoratetoleration bacterium. J Saf & Environ, 2008, 8 (3): 78-81
20. Garbeva P, van Overbeek LS, van Vuurde JWL, Van Elsas JD. Analysis of endophytic bacterial communities of potato by plating and denaturing gradient gel electrophoresis (DGGE) of 16S rDNA based PCR fragments. Microb Ecol, 2001, 41: 369-383